RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 ABCC2Q92887 1545 aa23.26■■□□□ 1.31
CLCNKA-203ENST00000439316 PLEKHD1A6NEE1 506 aa23.24■■□□□ 1.31
CLCNKA-203ENST00000439316 TCOF1Q13428 1488 aaKnown RBP23.22■■□□□ 1.31
CLCNKA-203ENST00000439316 KIF14Q15058 1648 aa23.21■■□□□ 1.31
CLCNKA-203ENST00000439316 CCER2I3L3R5 266 aa23.21■■□□□ 1.31
CLCNKA-203ENST00000439316 GCC2Q8IWJ2 1684 aa23.2■■□□□ 1.31
CLCNKA-203ENST00000439316 ADCY10Q96PN6 1610 aa23.2■■□□□ 1.31
CLCNKA-203ENST00000439316 KDM5BQ9UGL1 1544 aa23.2■■□□□ 1.31
CLCNKA-203ENST00000439316 UHRF1BP1LA0JNW5 1464 aa23.17■■□□□ 1.3
CLCNKA-203ENST00000439316 MIA2Q96PC5 1412 aa23.16■■□□□ 1.3
CLCNKA-203ENST00000439316 AKNAQ7Z591 1439 aa23.16■■□□□ 1.3
CLCNKA-203ENST00000439316 HIRIP3Q9BW71 556 aaPredicted RBP23.16■■□□□ 1.3
CLCNKA-203ENST00000439316 ANP32CO43423 234 aa23.13■■□□□ 1.29
CLCNKA-203ENST00000439316 ZCCHC11Q5TAX3 1644 aaKnown RBP23.12■■□□□ 1.29
CLCNKA-203ENST00000439316 GPATCH8Q9UKJ3 1502 aaKnown RBP23.1■■□□□ 1.29
CLCNKA-203ENST00000439316 ITSN2Q9NZM3 1697 aa23.09■■□□□ 1.29
CLCNKA-203ENST00000439316 ABCC10Q5T3U5 1492 aa23.09■■□□□ 1.29
CLCNKA-203ENST00000439316 DENND4BO75064 1496 aaPredicted RBP23.08■■□□□ 1.29
CLCNKA-203ENST00000439316 TSHZ2Q9NRE2 1034 aa23.07■■□□□ 1.28
CLCNKA-203ENST00000439316 CFDP1Q9UEE9 299 aaPredicted RBP23.07■■□□□ 1.28
CLCNKA-203ENST00000439316 CDC42BPAQ5VT25 1732 aa23.06■■□□□ 1.28
CLCNKA-203ENST00000439316 ZNF644Q9H582 1327 aaPredicted RBP23.06■■□□□ 1.28
CLCNKA-203ENST00000439316 KDM6BO15054 1643 aa23.04■■□□□ 1.28
CLCNKA-203ENST00000439316 RRP7BPQ9NSQ0 103 aa23.01■■□□□ 1.27
CLCNKA-203ENST00000439316 ZNF777Q9ULD5 760 aaPredicted RBP23■■□□□ 1.27
CLCNKA-203ENST00000439316 CAMSAP2Q08AD1 1489 aa22.99■■□□□ 1.27
CLCNKA-203ENST00000439316 FKBP8Q14318 412 aa22.99■■□□□ 1.27
CLCNKA-203ENST00000439316 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.98■■□□□ 1.27
CLCNKA-203ENST00000439316 TTC37Q6PGP7 1564 aa22.97■■□□□ 1.27
CLCNKA-203ENST00000439316 CHIC2Q9UKJ5 165 aa22.97■■□□□ 1.27
CLCNKA-203ENST00000439316 DNMT1P26358 1616 aaKnown RBP22.96■■□□□ 1.27
CLCNKA-203ENST00000439316 DAPK1P53355 1430 aa22.95■■□□□ 1.26
CLCNKA-203ENST00000439316 CDC42BPBQ9Y5S2 1711 aa22.95■■□□□ 1.26
CLCNKA-203ENST00000439316 TRIM52Q96A61 297 aa22.94■■□□□ 1.26
CLCNKA-203ENST00000439316 PREX2Q70Z35 1606 aa22.94■■□□□ 1.26
CLCNKA-203ENST00000439316 ABCC5O15440 1437 aa22.93■■□□□ 1.26
CLCNKA-203ENST00000439316 BCANQ96GW7 911 aa22.92■■□□□ 1.26
CLCNKA-203ENST00000439316 ROCK1Q13464 1354 aa22.92■■□□□ 1.26
CLCNKA-203ENST00000439316 NEFLP07196 543 aa22.9■■□□□ 1.26
CLCNKA-203ENST00000439316 WDR7Q9Y4E6 1490 aa22.9■■□□□ 1.26
CLCNKA-203ENST00000439316 MYO5CQ9NQX4 1742 aa22.9■■□□□ 1.26
CLCNKA-203ENST00000439316 HSPA5P11021 654 aaKnown RBP22.89■■□□□ 1.26
CLCNKA-203ENST00000439316 MPHOSPH9Q99550 1183 aa22.89■■□□□ 1.26
CLCNKA-203ENST00000439316 WASHC2AQ641Q2 1341 aa22.88■■□□□ 1.25
CLCNKA-203ENST00000439316 NPM1P06748 294 aaKnown RBP eCLIP22.88■■□□□ 1.25
CLCNKA-203ENST00000439316 RIMBP3CA6NJZ7 1639 aa22.87■■□□□ 1.25
CLCNKA-203ENST00000439316 RIMBP3BA6NNM3 1639 aa22.87■■□□□ 1.25
CLCNKA-203ENST00000439316 RIMBP3Q9UFD9 1639 aa22.87■■□□□ 1.25
CLCNKA-203ENST00000439316 ARHGAP5Q13017 1502 aa22.86■■□□□ 1.25
CLCNKA-203ENST00000439316 ASXL2Q76L83 1435 aa22.86■■□□□ 1.25
CLCNKA-203ENST00000439316 SAMD9LQ8IVG5 1584 aa22.85■■□□□ 1.25
CLCNKA-203ENST00000439316 CYB5RLQ6IPT4 315 aa22.83■■□□□ 1.25
CLCNKA-203ENST00000439316 CROCC2H7BZ55 1655 aa22.83■■□□□ 1.25
CLCNKA-203ENST00000439316 RPRD2Q5VT52 1461 aaKnown RBP22.83■■□□□ 1.25
CLCNKA-203ENST00000439316 EIF4G2P78344 907 aaKnown RBP eCLIP22.83■■□□□ 1.24
CLCNKA-203ENST00000439316 CNTLNQ9NXG0 1405 aa22.83■■□□□ 1.24
CLCNKA-203ENST00000439316 TEX14Q8IWB6 1497 aa22.82■■□□□ 1.24
CLCNKA-203ENST00000439316 PLCH2O75038 1416 aa22.82■■□□□ 1.24
CLCNKA-203ENST00000439316 HNRNPMP52272 730 aaKnown RBP eCLIP22.81■■□□□ 1.24
CLCNKA-203ENST00000439316 ANKRD30BQ9BXX2 1392 aa22.81■■□□□ 1.24
CLCNKA-203ENST00000439316 L3MBTL2Q969R5 705 aa22.8■■□□□ 1.24
CLCNKA-203ENST00000439316 NCOA1Q15788 1441 aa22.8■■□□□ 1.24
CLCNKA-203ENST00000439316 MBD5Q9P267 1494 aa22.78■■□□□ 1.24
CLCNKA-203ENST00000439316 ADGBQ8N7X0 1667 aa22.78■■□□□ 1.24
CLCNKA-203ENST00000439316 ARHGEF5Q12774 1597 aa22.78■■□□□ 1.24
CLCNKA-203ENST00000439316 ABCA9Q8IUA7 1624 aa22.76■■□□□ 1.23
CLCNKA-203ENST00000439316 SYCP2Q9BX26 1530 aa22.76■■□□□ 1.23
CLCNKA-203ENST00000439316 EFCAB2Q5VUJ9 269 aa22.75■■□□□ 1.23
CLCNKA-203ENST00000439316 CCDC7Q96M83 1385 aa22.75■■□□□ 1.23
CLCNKA-203ENST00000439316 FOXD1Q16676 465 aa22.74■■□□□ 1.23
CLCNKA-203ENST00000439316 POLR1AO95602 1720 aaPredicted RBP22.74■■□□□ 1.23
CLCNKA-203ENST00000439316 ADGRL2O95490 1459 aa22.74■■□□□ 1.23
CLCNKA-203ENST00000439316 TSPY4P0CV99 314 aa22.74■■□□□ 1.23
CLCNKA-203ENST00000439316 TSPY10P0CW01 314 aa22.74■■□□□ 1.23
CLCNKA-203ENST00000439316 HNRNPUQ00839 825 aaKnown RBP eCLIP22.74■■□□□ 1.23
CLCNKA-203ENST00000439316 C9orf84Q5VXU9 1444 aa22.73■■□□□ 1.23
CLCNKA-203ENST00000439316 SHANK2Q9UPX8 1470 aa22.73■■□□□ 1.23
CLCNKA-203ENST00000439316 CCDC141Q6ZP82 1450 aa22.72■■□□□ 1.23
CLCNKA-203ENST00000439316 ARAP3Q8WWN8 1544 aa22.71■■□□□ 1.23
CLCNKA-203ENST00000439316 PLEKHH2Q8IVE3 1493 aa22.71■■□□□ 1.23
CLCNKA-203ENST00000439316 KIAA1107Q9UPP5 1409 aa22.71■■□□□ 1.23
CLCNKA-203ENST00000439316 ANKRD30AQ9BXX3 1397 aa22.71■■□□□ 1.23
CLCNKA-203ENST00000439316 RSPH4AQ5TD94 716 aa22.71■■□□□ 1.23
CLCNKA-203ENST00000439316 SPATA31E1Q6ZUB1 1445 aa22.69■■□□□ 1.22
CLCNKA-203ENST00000439316 ARHGEF12Q9NZN5 1544 aa22.69■■□□□ 1.22
CLCNKA-203ENST00000439316 PZPP20742 1482 aa22.69■■□□□ 1.22
CLCNKA-203ENST00000439316 NBPF8Q3BBV2 869 aa22.69■■□□□ 1.22
CLCNKA-203ENST00000439316 C11orf95C9JLR9 678 aaPredicted RBP22.68■■□□□ 1.22
CLCNKA-203ENST00000439316 ABCC1P33527 1531 aa22.66■■□□□ 1.22
CLCNKA-203ENST00000439316 FANCAO15360 1455 aa22.65■■□□□ 1.22
CLCNKA-203ENST00000439316 SLC4A1APQ9BWU0 796 aaKnown RBP22.65■■□□□ 1.22
CLCNKA-203ENST00000439316 PRKRIP1Q9H875 184 aaPredicted RBP22.64■■□□□ 1.21
CLCNKA-203ENST00000439316 ANP32EQ9BTT0 268 aa22.63■■□□□ 1.21
CLCNKA-203ENST00000439316 CCDC184Q52MB2 194 aa22.61■■□□□ 1.21
CLCNKA-203ENST00000439316 ANKRD50Q9ULJ7 1429 aa22.61■■□□□ 1.21
CLCNKA-203ENST00000439316 MAST1Q9Y2H9 1570 aa22.61■■□□□ 1.21
CLCNKA-203ENST00000439316 KIF15Q9NS87 1388 aa22.6■■□□□ 1.21
CLCNKA-203ENST00000439316 CD109Q6YHK3 1445 aa22.6■■□□□ 1.21
CLCNKA-203ENST00000439316 TRAPPC8Q9Y2L5 1435 aa22.6■■□□□ 1.21
CLCNKA-203ENST00000439316 RBM19Q9Y4C8 960 aaKnown RBP22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms