RNA–Protein interactions for RNA: ENST00000435532.7

NEDD4-202, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD4, Length 5,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-202ENST00000435532 MORC1Q86VD1 984 aa20.38■□□□□ 0.85
NEDD4-202ENST00000435532 CSB-PGBD3P0DP91 1061 aa20.38■□□□□ 0.85
NEDD4-202ENST00000435532 SOX12O15370 315 aa20.37■□□□□ 0.85
NEDD4-202ENST00000435532 CC2D1BQ5T0F9 858 aaKnown RBP20.36■□□□□ 0.85
NEDD4-202ENST00000435532 NEUROD2Q15784 382 aa20.35■□□□□ 0.85
NEDD4-202ENST00000435532 MS4A1P11836 297 aa20.35■□□□□ 0.85
NEDD4-202ENST00000435532 CASC1Q6TDU7 716 aa20.34■□□□□ 0.85
NEDD4-202ENST00000435532 FGD5Q6ZNL6 1462 aa20.33■□□□□ 0.85
NEDD4-202ENST00000435532 RTF1Q92541 710 aaKnown RBP20.33■□□□□ 0.85
NEDD4-202ENST00000435532 CCDC9Q9Y3X0 531 aaKnown RBP20.32■□□□□ 0.84
NEDD4-202ENST00000435532 FAM69CQ0P6D2 419 aa20.32■□□□□ 0.84
NEDD4-202ENST00000435532 MPHOSPH9Q99550 1183 aa20.3■□□□□ 0.84
NEDD4-202ENST00000435532 ROCK2O75116 1388 aaKnown RBP20.29■□□□□ 0.84
NEDD4-202ENST00000435532 KANK4Q5T7N3 995 aaPredicted RBP20.29■□□□□ 0.84
NEDD4-202ENST00000435532 GOLGA2Q08379 1002 aa20.28■□□□□ 0.84
NEDD4-202ENST00000435532 MRC2Q9UBG0 1479 aa20.26■□□□□ 0.83
NEDD4-202ENST00000435532 UACAQ9BZF9 1416 aa20.26■□□□□ 0.83
NEDD4-202ENST00000435532 OS9Q13438 667 aaPredicted RBP20.26■□□□□ 0.83
NEDD4-202ENST00000435532 TERF2IPQ9NYB0 399 aa20.25■□□□□ 0.83
NEDD4-202ENST00000435532 NGDNQ8NEJ9 315 aaKnown RBP20.24■□□□□ 0.83
NEDD4-202ENST00000435532 CHMP4AQ9BY43 222 aa20.24■□□□□ 0.83
NEDD4-202ENST00000435532 CDK11BP21127 795 aaKnown RBP20.22■□□□□ 0.83
NEDD4-202ENST00000435532 GRIN2BQ13224 1484 aa20.22■□□□□ 0.83
NEDD4-202ENST00000435532 CALD1Q05682 793 aaKnown RBP20.21■□□□□ 0.83
NEDD4-202ENST00000435532 RAD54L2Q9Y4B4 1467 aa20.21■□□□□ 0.83
NEDD4-202ENST00000435532 TMX4Q9H1E5 349 aaPredicted RBP20.2■□□□□ 0.82
NEDD4-202ENST00000435532 MIER1Q8N108 512 aa20.19■□□□□ 0.82
NEDD4-202ENST00000435532 CC2D2AQ9P2K1 1620 aa20.18■□□□□ 0.82
NEDD4-202ENST00000435532 FOXD1Q16676 465 aa20.18■□□□□ 0.82
NEDD4-202ENST00000435532 KTN1Q86UP2 1357 aaKnown RBP20.18■□□□□ 0.82
NEDD4-202ENST00000435532 IFT140Q96RY7 1462 aa20.18■□□□□ 0.82
NEDD4-202ENST00000435532 AQRO60306 1485 aaKnown RBP eCLIP20.17■□□□□ 0.82
NEDD4-202ENST00000435532 VGFO15240 615 aaPredicted RBP20.16■□□□□ 0.82
NEDD4-202ENST00000435532 NCLP19338 710 aaKnown RBP20.14■□□□□ 0.81
NEDD4-202ENST00000435532 BECN1Q14457 450 aa20.14■□□□□ 0.81
NEDD4-202ENST00000435532 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.13■□□□□ 0.81
NEDD4-202ENST00000435532 FRAT1Q92837 279 aaPredicted RBP20.13■□□□□ 0.81
NEDD4-202ENST00000435532 RAB3GAP2Q9H2M9 1393 aa20.13■□□□□ 0.81
NEDD4-202ENST00000435532 NUTM2DQ5VT03 806 aaPredicted RBP20.13■□□□□ 0.81
NEDD4-202ENST00000435532 HSPA5P11021 654 aaKnown RBP20.12■□□□□ 0.81
NEDD4-202ENST00000435532 IGF1RP08069 1367 aa20.11■□□□□ 0.81
NEDD4-202ENST00000435532 CCDC144AA2RUR9 1427 aa20.11■□□□□ 0.81
NEDD4-202ENST00000435532 AMPHP49418 695 aa20.08■□□□□ 0.8
NEDD4-202ENST00000435532 IRX6P78412 446 aaPredicted RBP20.07■□□□□ 0.8
NEDD4-202ENST00000435532 HMGXB3Q12766 1538 aa20.06■□□□□ 0.8
NEDD4-202ENST00000435532 DDRGK1Q96HY6 314 aa20.06■□□□□ 0.8
NEDD4-202ENST00000435532 U2AF1L5P0DN76 240 aaPredicted RBP20.05■□□□□ 0.8
NEDD4-202ENST00000435532 U2AF1Q01081 240 aaKnown RBP eCLIP20.05■□□□□ 0.8
NEDD4-202ENST00000435532 MEX3CQ5U5Q3 659 aaKnown RBP20.05■□□□□ 0.8
NEDD4-202ENST00000435532 RALBP1Q15311 655 aa20.05■□□□□ 0.8
NEDD4-202ENST00000435532 PRDM2Q13029 1718 aa20.04■□□□□ 0.8
NEDD4-202ENST00000435532 CFTRP13569 1480 aa20.03■□□□□ 0.8
NEDD4-202ENST00000435532 ZNF330Q9Y3S2 320 aaPredicted RBP20.03■□□□□ 0.8
NEDD4-202ENST00000435532 IPO8O15397 1037 aaKnown RBP20.03■□□□□ 0.8
NEDD4-202ENST00000435532 PRG4Q92954 1404 aaPredicted RBP20.02■□□□□ 0.8
NEDD4-202ENST00000435532 EVA1CP58658 441 aa20.02■□□□□ 0.79
NEDD4-202ENST00000435532 SYNJ2O15056 1496 aa20.01■□□□□ 0.79
NEDD4-202ENST00000435532 MYOM3Q5VTT5 1437 aa20.01■□□□□ 0.79
NEDD4-202ENST00000435532 GOLGA6L22H0YM25 854 aa20.01■□□□□ 0.79
NEDD4-202ENST00000435532 ZRSR1Q15695 479 aaKnown RBP20.01■□□□□ 0.79
NEDD4-202ENST00000435532 KCNJ4P48050 445 aa20■□□□□ 0.79
NEDD4-202ENST00000435532 TRAK1Q9UPV9 953 aa20■□□□□ 0.79
NEDD4-202ENST00000435532 HDAC5Q9UQL6 1122 aa20■□□□□ 0.79
NEDD4-202ENST00000435532 FGD1P98174 961 aa20■□□□□ 0.79
NEDD4-202ENST00000435532 LMOD3Q0VAK6 560 aa20■□□□□ 0.79
NEDD4-202ENST00000435532 SENP3-EIF4A1A0A087X0R7 540 aa19.99■□□□□ 0.79
NEDD4-202ENST00000435532 CUX1P39880 1505 aa19.99■□□□□ 0.79
NEDD4-202ENST00000435532 EVC2Q86UK5 1308 aa19.98■□□□□ 0.79
NEDD4-202ENST00000435532 STK31Q9BXU1 1019 aa19.97■□□□□ 0.79
NEDD4-202ENST00000435532 CFAP44Q96MT7 982 aa19.97■□□□□ 0.79
NEDD4-202ENST00000435532 NUTM2FA1L443 756 aa19.96■□□□□ 0.79
NEDD4-202ENST00000435532 NESP48681 1621 aa19.96■□□□□ 0.79
NEDD4-202ENST00000435532 ATF3P18847 181 aa19.94■□□□□ 0.78
NEDD4-202ENST00000435532 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.94■□□□□ 0.782e-6■■■□□ 17.5
NEDD4-202ENST00000435532 ARHGAP5Q13017 1502 aa19.93■□□□□ 0.78
NEDD4-202ENST00000435532 COG3Q96JB2 828 aa19.93■□□□□ 0.78
NEDD4-202ENST00000435532 L3MBTL2Q969R5 705 aa19.93■□□□□ 0.78
NEDD4-202ENST00000435532 RUSC2Q8N2Y8 1516 aa19.92■□□□□ 0.78
NEDD4-202ENST00000435532 LTV1Q96GA3 475 aaPredicted RBP19.92■□□□□ 0.78
NEDD4-202ENST00000435532 G3V3G9 751 aa19.91■□□□□ 0.78
NEDD4-202ENST00000435532 DCAF8Q5TAQ9 597 aa19.91■□□□□ 0.78
NEDD4-202ENST00000435532 CCER2I3L3R5 266 aa19.91■□□□□ 0.78
NEDD4-202ENST00000435532 STAC3Q96MF2 364 aa19.9■□□□□ 0.78
NEDD4-202ENST00000435532 PSME1Q06323 249 aa19.89■□□□□ 0.77
NEDD4-202ENST00000435532 ANP32EQ9BTT0 268 aa19.89■□□□□ 0.77
NEDD4-202ENST00000435532 MCCP23508 829 aa19.89■□□□□ 0.77
NEDD4-202ENST00000435532 TAF7LQ5H9L4 462 aa19.89■□□□□ 0.77
NEDD4-202ENST00000435532 TOPBP1Q92547 1522 aa19.89■□□□□ 0.77
NEDD4-202ENST00000435532 C1orf141Q5JVX7 400 aa19.88■□□□□ 0.77
NEDD4-202ENST00000435532 SNAPC4Q5SXM2 1469 aa19.88■□□□□ 0.77
NEDD4-202ENST00000435532 NAP1L2Q9ULW6 460 aaPredicted RBP19.87■□□□□ 0.77
NEDD4-202ENST00000435532 KIF15Q9NS87 1388 aa19.87■□□□□ 0.77
NEDD4-202ENST00000435532 SUPT16HQ9Y5B9 1047 aaKnown RBP19.86■□□□□ 0.77
NEDD4-202ENST00000435532 ISY1Q9ULR0 285 aaKnown RBP19.86■□□□□ 0.77
NEDD4-202ENST00000435532 POGZQ7Z3K3 1410 aa19.86■□□□□ 0.77
NEDD4-202ENST00000435532 GTF2E1P29083 439 aaPredicted RBP19.86■□□□□ 0.77
NEDD4-202ENST00000435532 PLEKHH2Q8IVE3 1493 aa19.85■□□□□ 0.77
NEDD4-202ENST00000435532 CGNL1Q0VF96 1302 aa19.84■□□□□ 0.77
NEDD4-202ENST00000435532 DHX57Q6P158 1386 aaKnown RBP19.83■□□□□ 0.77
NEDD4-202ENST00000435532 MINK1Q8N4C8 1332 aaPredicted RBP19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms