RNA–Protein interactions for RNA: ENST00000433224.1

LRRTM1-206, Transcript of leucine rich repeat transmembrane neuronal 1, humanhuman

TSL 1 (best)

Gene LRRTM1, Length 4,023 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRTM1-206ENST00000433224 SPAG9O60271 1321 aaKnown RBP16.72■□□□□ 0.27
LRRTM1-206ENST00000433224 RBM19Q9Y4C8 960 aaKnown RBP16.72■□□□□ 0.27
LRRTM1-206ENST00000433224 KNSTRNQ9Y448 316 aa16.72■□□□□ 0.27
LRRTM1-206ENST00000433224 GRIN2BQ13224 1484 aa16.71■□□□□ 0.27
LRRTM1-206ENST00000433224 FGD6Q6ZV73 1430 aa16.7■□□□□ 0.26
LRRTM1-206ENST00000433224 CCDC136Q96JN2 1154 aa16.7■□□□□ 0.26
LRRTM1-206ENST00000433224 TIMELESSQ9UNS1 1208 aa16.7■□□□□ 0.26
LRRTM1-206ENST00000433224 ZBTB7CA1YPR0 619 aa16.69■□□□□ 0.26
LRRTM1-206ENST00000433224 OSCARQ8IYS5 282 aa16.69■□□□□ 0.26
LRRTM1-206ENST00000433224 C14orf37Q86TY3 774 aa16.68■□□□□ 0.26
LRRTM1-206ENST00000433224 MRC2Q9UBG0 1479 aa16.67■□□□□ 0.26
LRRTM1-206ENST00000433224 ERICH3Q5RHP9 1530 aa16.67■□□□□ 0.26
LRRTM1-206ENST00000433224 POGKQ9P215 609 aa16.66■□□□□ 0.26
LRRTM1-206ENST00000433224 AFAP1Q8N556 730 aa16.66■□□□□ 0.26
LRRTM1-206ENST00000433224 PEG3Q9GZU2 1588 aa16.66■□□□□ 0.26
LRRTM1-206ENST00000433224 CASKIN1Q8WXD9 1431 aa16.64■□□□□ 0.25
LRRTM1-206ENST00000433224 NCOA2Q15596 1464 aa16.64■□□□□ 0.25
LRRTM1-206ENST00000433224 SNAPC4Q5SXM2 1469 aa16.64■□□□□ 0.25
LRRTM1-206ENST00000433224 SOX12O15370 315 aa16.64■□□□□ 0.25
LRRTM1-206ENST00000433224 MYOM3Q5VTT5 1437 aa16.63■□□□□ 0.25
LRRTM1-206ENST00000433224 URB2Q14146 1524 aaKnown RBP16.63■□□□□ 0.25
LRRTM1-206ENST00000433224 PRDM2Q13029 1718 aa16.63■□□□□ 0.25
LRRTM1-206ENST00000433224 ZNF608Q9ULD9 1512 aaPredicted RBP16.63■□□□□ 0.25
LRRTM1-206ENST00000433224 ST20-MTHFSA0A0A6YYL1 179 aa16.62■□□□□ 0.25
LRRTM1-206ENST00000433224 B4GALNT3Q6L9W6 998 aa16.62■□□□□ 0.25
LRRTM1-206ENST00000433224 PRG4Q92954 1404 aaPredicted RBP16.62■□□□□ 0.25
LRRTM1-206ENST00000433224 DNMBPQ6XZF7 1577 aa16.62■□□□□ 0.25
LRRTM1-206ENST00000433224 ROCK2O75116 1388 aaKnown RBP16.61■□□□□ 0.25
LRRTM1-206ENST00000433224 KANK1Q14678 1352 aa16.6■□□□□ 0.25
LRRTM1-206ENST00000433224 TMF1P82094 1093 aa16.6■□□□□ 0.25
LRRTM1-206ENST00000433224 WASHC2CQ9Y4E1 1318 aa16.59■□□□□ 0.25
LRRTM1-206ENST00000433224 ZBTB47Q9UFB7 747 aaPredicted RBP16.58■□□□□ 0.24
LRRTM1-206ENST00000433224 ABCA10Q8WWZ4 1543 aa16.57■□□□□ 0.24
LRRTM1-206ENST00000433224 SRPK2P78362 688 aaKnown RBP16.57■□□□□ 0.24
LRRTM1-206ENST00000433224 IFT140Q96RY7 1462 aa16.55■□□□□ 0.24
LRRTM1-206ENST00000433224 CDK13Q14004 1512 aaKnown RBP16.54■□□□□ 0.24
LRRTM1-206ENST00000433224 TRAK1Q9UPV9 953 aa16.54■□□□□ 0.24
LRRTM1-206ENST00000433224 LMOD2Q6P5Q4 547 aa16.54■□□□□ 0.24
LRRTM1-206ENST00000433224 NUTM2FA1L443 756 aa16.54■□□□□ 0.24
LRRTM1-206ENST00000433224 CDCA8Q53HL2 280 aa16.54■□□□□ 0.24
LRRTM1-206ENST00000433224 RRBP1Q9P2E9 1410 aaKnown RBP16.53■□□□□ 0.24
LRRTM1-206ENST00000433224 U2SURPO15042 1029 aaKnown RBP16.53■□□□□ 0.24
LRRTM1-206ENST00000433224 RSPH4AQ5TD94 716 aa16.52■□□□□ 0.24
LRRTM1-206ENST00000433224 KIF15Q9NS87 1388 aa16.52■□□□□ 0.24
LRRTM1-206ENST00000433224 CCER2I3L3R5 266 aa16.51■□□□□ 0.23
LRRTM1-206ENST00000433224 PPP4R2Q9NY27 417 aa16.51■□□□□ 0.23
LRRTM1-206ENST00000433224 FYCO1Q9BQS8 1478 aa16.5■□□□□ 0.23
LRRTM1-206ENST00000433224 LAS1LQ9Y4W2 734 aaKnown RBP16.49■□□□□ 0.23
LRRTM1-206ENST00000433224 FAM69CQ0P6D2 419 aa16.49■□□□□ 0.23
LRRTM1-206ENST00000433224 PLB1Q6P1J6 1458 aa16.48■□□□□ 0.23
LRRTM1-206ENST00000433224 LAMC3Q9Y6N6 1575 aa16.48■□□□□ 0.23
LRRTM1-206ENST00000433224 CCDC144AA2RUR9 1427 aa16.46■□□□□ 0.23
LRRTM1-206ENST00000433224 TIAM1Q13009 1591 aa16.46■□□□□ 0.23
LRRTM1-206ENST00000433224 ANKRD50Q9ULJ7 1429 aa16.46■□□□□ 0.22
LRRTM1-206ENST00000433224 EIF5BO60841 1220 aaKnown RBP16.45■□□□□ 0.22
LRRTM1-206ENST00000433224 UACAQ9BZF9 1416 aa16.44■□□□□ 0.22
LRRTM1-206ENST00000433224 A0A0G2JS52 829 aa16.44■□□□□ 0.22
LRRTM1-206ENST00000433224 NBPF8Q3BBV2 869 aa16.44■□□□□ 0.22
LRRTM1-206ENST00000433224 MORC1Q86VD1 984 aa16.44■□□□□ 0.22
LRRTM1-206ENST00000433224 FRAT1Q92837 279 aaPredicted RBP16.43■□□□□ 0.22
LRRTM1-206ENST00000433224 CFAP53Q96M91 514 aa16.43■□□□□ 0.22
LRRTM1-206ENST00000433224 PCF11O94913 1555 aaKnown RBP16.42■□□□□ 0.22
LRRTM1-206ENST00000433224 RAPGEF3O95398 923 aa16.42■□□□□ 0.22
LRRTM1-206ENST00000433224 PANK3Q9H999 370 aa16.42■□□□□ 0.22
LRRTM1-206ENST00000433224 USP47Q96K76 1375 aa16.41■□□□□ 0.22
LRRTM1-206ENST00000433224 NBPF1Q3BBV0 1214 aa16.41■□□□□ 0.22
LRRTM1-206ENST00000433224 CCDC146Q8IYE0 955 aa16.4■□□□□ 0.22
LRRTM1-206ENST00000433224 KIAA0586Q9BVV6 1533 aa16.4■□□□□ 0.22
LRRTM1-206ENST00000433224 EPRSP07814 1512 aaKnown RBP16.4■□□□□ 0.22
LRRTM1-206ENST00000433224 RTN4Q9NQC3 1192 aaKnown RBP16.4■□□□□ 0.22
LRRTM1-206ENST00000433224 NOP58Q9Y2X3 529 aaKnown RBP16.4■□□□□ 0.22
LRRTM1-206ENST00000433224 PRKRIP1Q9H875 184 aaPredicted RBP16.39■□□□□ 0.21
LRRTM1-206ENST00000433224 DEKP35659 375 aaKnown RBP16.38■□□□□ 0.21
LRRTM1-206ENST00000433224 TMEM132EQ6IEE7 984 aa16.38■□□□□ 0.21
LRRTM1-206ENST00000433224 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.38■□□□□ 0.21
LRRTM1-206ENST00000433224 EFCAB5A4FU69 1503 aa16.38■□□□□ 0.21
LRRTM1-206ENST00000433224 TROQ12816 1431 aaPredicted RBP16.37■□□□□ 0.21
LRRTM1-206ENST00000433224 BIVM-ERCC5R4GMW8 1640 aa16.37■□□□□ 0.21
LRRTM1-206ENST00000433224 SYNJ2O15056 1496 aa16.37■□□□□ 0.21
LRRTM1-206ENST00000433224 WASHC2AQ641Q2 1341 aa16.37■□□□□ 0.21
LRRTM1-206ENST00000433224 KTN1Q86UP2 1357 aaKnown RBP16.36■□□□□ 0.21
LRRTM1-206ENST00000433224 KIF7Q2M1P5 1343 aa16.35■□□□□ 0.21
LRRTM1-206ENST00000433224 ARHGAP5Q13017 1502 aa16.35■□□□□ 0.21
LRRTM1-206ENST00000433224 GRIN2AQ12879 1464 aa16.34■□□□□ 0.21
LRRTM1-206ENST00000433224 ARXQ96QS3 562 aa16.34■□□□□ 0.21
LRRTM1-206ENST00000433224 IQGAP2Q13576 1575 aa16.34■□□□□ 0.21
LRRTM1-206ENST00000433224 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.34■□□□□ 0.21
LRRTM1-206ENST00000433224 ARHGEF11O15085 1522 aa16.34■□□□□ 0.21
LRRTM1-206ENST00000433224 MAPK8IP3Q9UPT6 1336 aa16.34■□□□□ 0.21
LRRTM1-206ENST00000433224 NAIPQ13075 1403 aa16.33■□□□□ 0.21
LRRTM1-206ENST00000433224 U2AF1L5P0DN76 240 aaPredicted RBP16.33■□□□□ 0.2
LRRTM1-206ENST00000433224 U2AF1Q01081 240 aaKnown RBP eCLIP16.33■□□□□ 0.2
LRRTM1-206ENST00000433224 SCAPERQ9BY12 1400 aa16.33■□□□□ 0.2
LRRTM1-206ENST00000433224 RGS3P49796 1198 aa16.32■□□□□ 0.2
LRRTM1-206ENST00000433224 MINK1Q8N4C8 1332 aaPredicted RBP16.32■□□□□ 0.2
LRRTM1-206ENST00000433224 CFAP70Q5T0N1 1121 aa16.32■□□□□ 0.2
LRRTM1-206ENST00000433224 RRP7AQ9Y3A4 280 aaKnown RBP16.31■□□□□ 0.2
LRRTM1-206ENST00000433224 HFM1A2PYH4 1435 aa16.31■□□□□ 0.2
LRRTM1-206ENST00000433224 NUDCQ9Y266 331 aa16.3■□□□□ 0.2
LRRTM1-206ENST00000433224 C9orf84Q5VXU9 1444 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms