RNA–Protein interactions for RNA: ENST00000429411.5

HPS4-205, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 3,492 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-205ENST00000429411 PLEKHD1A6NEE1 506 aa11.07□□□□□ -0.64
HPS4-205ENST00000429411 ANP32EQ9BTT0 268 aa11.07□□□□□ -0.64
HPS4-205ENST00000429411 RBM19Q9Y4C8 960 aaKnown RBP11.07□□□□□ -0.64
HPS4-205ENST00000429411 TIAM1Q13009 1591 aa11.06□□□□□ -0.64
HPS4-205ENST00000429411 KDM2AQ9Y2K7 1162 aa11.05□□□□□ -0.64
HPS4-205ENST00000429411 MLECQ14165 292 aa11.04□□□□□ -0.64
HPS4-205ENST00000429411 KIAA0586Q9BVV6 1533 aa11.04□□□□□ -0.64
HPS4-205ENST00000429411 CCER2I3L3R5 266 aa11.04□□□□□ -0.64
HPS4-205ENST00000429411 ARID4BQ4LE39 1312 aaPredicted RBP11.03□□□□□ -0.64
HPS4-205ENST00000429411 B4GALNT3Q6L9W6 998 aa11.03□□□□□ -0.64
HPS4-205ENST00000429411 L3MBTL2Q969R5 705 aa11.03□□□□□ -0.64
HPS4-205ENST00000429411 ABCA5Q8WWZ7 1642 aa11.03□□□□□ -0.64
HPS4-205ENST00000429411 CEP170Q5SW79 1584 aa11.03□□□□□ -0.64
HPS4-205ENST00000429411 CCDC18Q5T9S5 1454 aa11.03□□□□□ -0.64
HPS4-205ENST00000429411 ADAMTS12P58397 1594 aa11.03□□□□□ -0.64
HPS4-205ENST00000429411 TPRNQ4KMQ1 711 aa11.02□□□□□ -0.65
HPS4-205ENST00000429411 TAOK2Q9UL54 1235 aa11.02□□□□□ -0.65
HPS4-205ENST00000429411 MAPKBP1O60336 1514 aa11.02□□□□□ -0.65
HPS4-205ENST00000429411 NUP160Q12769 1436 aa11.01□□□□□ -0.65
HPS4-205ENST00000429411 FMN1Q68DA7 1419 aa11.01□□□□□ -0.65
HPS4-205ENST00000429411 RIMBP3CA6NJZ7 1639 aa11.01□□□□□ -0.65
HPS4-205ENST00000429411 RIMBP3BA6NNM3 1639 aa11.01□□□□□ -0.65
HPS4-205ENST00000429411 RIMBP3Q9UFD9 1639 aa11.01□□□□□ -0.65
HPS4-205ENST00000429411 MPHOSPH9Q99550 1183 aa11.01□□□□□ -0.65
HPS4-205ENST00000429411 FGD6Q6ZV73 1430 aa11.01□□□□□ -0.65
HPS4-205ENST00000429411 PBRM1Q86U86 1689 aa11.01□□□□□ -0.65
HPS4-205ENST00000429411 PLB1Q6P1J6 1458 aa11.01□□□□□ -0.65
HPS4-205ENST00000429411 PCF11O94913 1555 aaKnown RBP11□□□□□ -0.65
HPS4-205ENST00000429411 CCDC184Q52MB2 194 aa10.99□□□□□ -0.65
HPS4-205ENST00000429411 ZNF644Q9H582 1327 aaPredicted RBP10.98□□□□□ -0.65
HPS4-205ENST00000429411 CFDP1Q9UEE9 299 aaPredicted RBP10.96□□□□□ -0.66
HPS4-205ENST00000429411 WASHC2AQ641Q2 1341 aa10.96□□□□□ -0.66
HPS4-205ENST00000429411 RAPGEF3O95398 923 aa10.96□□□□□ -0.66
HPS4-205ENST00000429411 CASKIN1Q8WXD9 1431 aa10.95□□□□□ -0.66
HPS4-205ENST00000429411 TMC1Q8TDI8 760 aa10.95□□□□□ -0.66
HPS4-205ENST00000429411 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.95□□□□□ -0.666e-6■□□□□ 8.2
HPS4-205ENST00000429411 C14orf37Q86TY3 774 aa10.94□□□□□ -0.66
HPS4-205ENST00000429411 NBR1Q14596 966 aa10.94□□□□□ -0.66
HPS4-205ENST00000429411 NPM2Q86SE8 214 aaKnown RBP10.94□□□□□ -0.66
HPS4-205ENST00000429411 RGL3Q3MIN7 710 aa10.94□□□□□ -0.66
HPS4-205ENST00000429411 NCOA2Q15596 1464 aa10.94□□□□□ -0.66
HPS4-205ENST00000429411 IQGAP2Q13576 1575 aa10.93□□□□□ -0.66
HPS4-205ENST00000429411 CUL7Q14999 1698 aa10.93□□□□□ -0.66
HPS4-205ENST00000429411 SENP3Q9H4L4 574 aaPredicted RBP10.93□□□□□ -0.66
HPS4-205ENST00000429411 PTPRKQ15262 1439 aa10.93□□□□□ -0.66
HPS4-205ENST00000429411 UACAQ9BZF9 1416 aa10.93□□□□□ -0.66
HPS4-205ENST00000429411 CCDC136Q96JN2 1154 aa10.92□□□□□ -0.66
HPS4-205ENST00000429411 MYOM3Q5VTT5 1437 aa10.92□□□□□ -0.66
HPS4-205ENST00000429411 FYCO1Q9BQS8 1478 aa10.91□□□□□ -0.66
HPS4-205ENST00000429411 C11orf95C9JLR9 678 aaPredicted RBP10.91□□□□□ -0.66
HPS4-205ENST00000429411 HAP1P54257 671 aaPredicted RBP10.91□□□□□ -0.66
HPS4-205ENST00000429411 PRKRIP1Q9H875 184 aaPredicted RBP10.9□□□□□ -0.66
HPS4-205ENST00000429411 PKD2Q13563 968 aa10.89□□□□□ -0.67
HPS4-205ENST00000429411 PPP4R2Q9NY27 417 aa10.89□□□□□ -0.67
HPS4-205ENST00000429411 NBPF8Q3BBV2 869 aa10.89□□□□□ -0.67
HPS4-205ENST00000429411 NAIPQ13075 1403 aa10.89□□□□□ -0.67
HPS4-205ENST00000429411 CARD11Q9BXL7 1154 aa10.89□□□□□ -0.67
HPS4-205ENST00000429411 ASXL2Q76L83 1435 aa10.88□□□□□ -0.67
HPS4-205ENST00000429411 PDIA4P13667 645 aaKnown RBP10.88□□□□□ -0.67
HPS4-205ENST00000429411 CLASP1Q7Z460 1538 aa10.87□□□□□ -0.67
HPS4-205ENST00000429411 HFM1A2PYH4 1435 aa10.87□□□□□ -0.67
HPS4-205ENST00000429411 TSPY4P0CV99 314 aa10.87□□□□□ -0.67
HPS4-205ENST00000429411 TSPY10P0CW01 314 aa10.87□□□□□ -0.67
HPS4-205ENST00000429411 DISP1Q96F81 1524 aa10.86□□□□□ -0.67
HPS4-205ENST00000429411 DCAF11Q8TEB1 546 aa10.86□□□□□ -0.67
HPS4-205ENST00000429411 HNRNPMP52272 730 aaKnown RBP eCLIP10.85□□□□□ -0.67
HPS4-205ENST00000429411 AFAP1Q8N556 730 aa10.85□□□□□ -0.67
HPS4-205ENST00000429411 ESF1Q9H501 851 aaKnown RBP10.84□□□□□ -0.67
HPS4-205ENST00000429411 MAP3K1Q13233 1512 aa10.84□□□□□ -0.67
HPS4-205ENST00000429411 KIF7Q2M1P5 1343 aa10.84□□□□□ -0.67
HPS4-205ENST00000429411 CDK13Q14004 1512 aaKnown RBP10.83□□□□□ -0.68
HPS4-205ENST00000429411 CCDC7Q96M83 1385 aa10.82□□□□□ -0.68
HPS4-205ENST00000429411 CTTNBP2Q8WZ74 1663 aa10.82□□□□□ -0.68
HPS4-205ENST00000429411 ANP32AP39687 249 aaKnown RBP10.82□□□□□ -0.68
HPS4-205ENST00000429411 RTL5Q5HYW3 569 aaPredicted RBP10.82□□□□□ -0.68
HPS4-205ENST00000429411 EFCAB5A4FU69 1503 aa10.82□□□□□ -0.68
HPS4-205ENST00000429411 CD109Q6YHK3 1445 aa10.81□□□□□ -0.68
HPS4-205ENST00000429411 EFCAB2Q5VUJ9 269 aa10.81□□□□□ -0.68
HPS4-205ENST00000429411 GGT6Q6P531 493 aa10.81□□□□□ -0.68
HPS4-205ENST00000429411 CC2D1BQ5T0F9 858 aaKnown RBP10.81□□□□□ -0.68
HPS4-205ENST00000429411 MSH5O43196 834 aa10.8□□□□□ -0.68
HPS4-205ENST00000429411 NUP155O75694 1391 aa10.79□□□□□ -0.68
HPS4-205ENST00000429411 PTPN23Q9H3S7 1636 aa10.79□□□□□ -0.68
HPS4-205ENST00000429411 ST20-MTHFSA0A0A6YYL1 179 aa10.79□□□□□ -0.68
HPS4-205ENST00000429411 PDE4CQ08493 712 aa10.79□□□□□ -0.68
HPS4-205ENST00000429411 CNTLNQ9NXG0 1405 aa10.78□□□□□ -0.68
HPS4-205ENST00000429411 ATP10BO94823 1461 aa10.78□□□□□ -0.68
HPS4-205ENST00000429411 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.77□□□□□ -0.68
HPS4-205ENST00000429411 ABCC2Q92887 1545 aa10.77□□□□□ -0.69
HPS4-205ENST00000429411 TSPOAP1O95153 1857 aa10.77□□□□□ -0.69
HPS4-205ENST00000429411 PKNOX2Q96KN3 472 aa10.76□□□□□ -0.69
HPS4-205ENST00000429411 USP47Q96K76 1375 aa10.76□□□□□ -0.69
HPS4-205ENST00000429411 CFAP43Q8NDM7 1665 aa10.76□□□□□ -0.69
HPS4-205ENST00000429411 ZBED9Q6R2W3 1325 aa10.75□□□□□ -0.69
HPS4-205ENST00000429411 ZBTB47Q9UFB7 747 aaPredicted RBP10.75□□□□□ -0.69
HPS4-205ENST00000429411 SUPT6HQ7KZ85 1726 aaKnown RBP10.75□□□□□ -0.69
HPS4-205ENST00000429411 KIAA0556O60303 1618 aa10.75□□□□□ -0.69
HPS4-205ENST00000429411 AKNAQ7Z591 1439 aa10.75□□□□□ -0.69
HPS4-205ENST00000429411 UBE2Q2Q8WVN8 375 aa10.74□□□□□ -0.69
HPS4-205ENST00000429411 EHBP1L1Q8N3D4 1523 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 118.3 ms