RNA–Protein interactions for RNA: ENST00000425443.6

COL12A1-205, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 5

Gene COL12A1, Length 3,135 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-205ENST00000425443 DISP1Q96F81 1524 aa18.17■□□□□ 0.5
COL12A1-205ENST00000425443 CCER2I3L3R5 266 aa18.16■□□□□ 0.5
COL12A1-205ENST00000425443 FOXD1Q16676 465 aa18.16■□□□□ 0.5
COL12A1-205ENST00000425443 ZNF777Q9ULD5 760 aaPredicted RBP18.16■□□□□ 0.5
COL12A1-205ENST00000425443 MPHOSPH9Q99550 1183 aa18.15■□□□□ 0.5
COL12A1-205ENST00000425443 ZNF644Q9H582 1327 aaPredicted RBP18.15■□□□□ 0.5
COL12A1-205ENST00000425443 DENND4BO75064 1496 aaPredicted RBP18.15■□□□□ 0.5
COL12A1-205ENST00000425443 CFDP1Q9UEE9 299 aaPredicted RBP18.13■□□□□ 0.49
COL12A1-205ENST00000425443 JPH4Q96JJ6 628 aa18.13■□□□□ 0.49
COL12A1-205ENST00000425443 KDM6BO15054 1643 aa18.13■□□□□ 0.49
COL12A1-205ENST00000425443 NUP153P49790 1475 aaKnown RBP18.12■□□□□ 0.49
COL12A1-205ENST00000425443 MAGI1Q96QZ7 1491 aaPredicted RBP18.12■□□□□ 0.49
COL12A1-205ENST00000425443 CNGB1Q14028 1251 aaPredicted RBP18.12■□□□□ 0.49
COL12A1-205ENST00000425443 CARMIL2Q6F5E8 1435 aa18.11■□□□□ 0.49
COL12A1-205ENST00000425443 RAPGEF6Q8TEU7 1601 aa18.11■□□□□ 0.49
COL12A1-205ENST00000425443 SYNJ2O15056 1496 aa18.1■□□□□ 0.49
COL12A1-205ENST00000425443 SLC4A1APQ9BWU0 796 aaKnown RBP18.08■□□□□ 0.49
COL12A1-205ENST00000425443 DAPK1P53355 1430 aa18.08■□□□□ 0.49
COL12A1-205ENST00000425443 AKNAQ7Z591 1439 aa18.08■□□□□ 0.49
COL12A1-205ENST00000425443 PRG4Q92954 1404 aaPredicted RBP18.08■□□□□ 0.49
COL12A1-205ENST00000425443 NEFLP07196 543 aa18.08■□□□□ 0.48
COL12A1-205ENST00000425443 CCDC136Q96JN2 1154 aa18.08■□□□□ 0.48
COL12A1-205ENST00000425443 GCC2Q8IWJ2 1684 aa18.08■□□□□ 0.48
COL12A1-205ENST00000425443 PLB1Q6P1J6 1458 aa18.07■□□□□ 0.48
COL12A1-205ENST00000425443 WASHC2AQ641Q2 1341 aa18.06■□□□□ 0.48
COL12A1-205ENST00000425443 PLEKHD1A6NEE1 506 aa18.05■□□□□ 0.48
COL12A1-205ENST00000425443 TROQ12816 1431 aaPredicted RBP18.04■□□□□ 0.48
COL12A1-205ENST00000425443 ABCC5O15440 1437 aa18.04■□□□□ 0.48
COL12A1-205ENST00000425443 CEP170Q5SW79 1584 aa18.04■□□□□ 0.48
COL12A1-205ENST00000425443 HSPA5P11021 654 aaKnown RBP18.03■□□□□ 0.48
COL12A1-205ENST00000425443 L3MBTL2Q969R5 705 aa18.03■□□□□ 0.48
COL12A1-205ENST00000425443 EIF4G2P78344 907 aaKnown RBP eCLIP18.03■□□□□ 0.48
COL12A1-205ENST00000425443 IRX6P78412 446 aaPredicted RBP18.03■□□□□ 0.48
COL12A1-205ENST00000425443 ROCK1Q13464 1354 aa18.02■□□□□ 0.48
COL12A1-205ENST00000425443 HNRNPUQ00839 825 aaKnown RBP eCLIP18.02■□□□□ 0.47
COL12A1-205ENST00000425443 CCDC184Q52MB2 194 aa18.01■□□□□ 0.47
COL12A1-205ENST00000425443 RBM19Q9Y4C8 960 aaKnown RBP18■□□□□ 0.47
COL12A1-205ENST00000425443 C11orf95C9JLR9 678 aaPredicted RBP17.99■□□□□ 0.47
COL12A1-205ENST00000425443 DNMT1P26358 1616 aaKnown RBP17.98■□□□□ 0.47
COL12A1-205ENST00000425443 POLR3GLQ9BT43 218 aa17.98■□□□□ 0.47
COL12A1-205ENST00000425443 UBE2Q2Q8WVN8 375 aa17.97■□□□□ 0.47
COL12A1-205ENST00000425443 CAMSAP2Q08AD1 1489 aa17.97■□□□□ 0.47
COL12A1-205ENST00000425443 ZNF326Q5BKZ1 582 aaKnown RBP17.96■□□□□ 0.47
COL12A1-205ENST00000425443 NUP160Q12769 1436 aa17.95■□□□□ 0.46
COL12A1-205ENST00000425443 GPATCH8Q9UKJ3 1502 aaKnown RBP17.94■□□□□ 0.46
COL12A1-205ENST00000425443 SALL2Q9Y467 1007 aaPredicted RBP17.94■□□□□ 0.46
COL12A1-205ENST00000425443 ANKRD30BQ9BXX2 1392 aa17.93■□□□□ 0.46
COL12A1-205ENST00000425443 TSPY4P0CV99 314 aa17.93■□□□□ 0.46
COL12A1-205ENST00000425443 TSPY10P0CW01 314 aa17.93■□□□□ 0.46
COL12A1-205ENST00000425443 ANKRD30AQ9BXX3 1397 aa17.92■□□□□ 0.46
COL12A1-205ENST00000425443 ITSN2Q9NZM3 1697 aa17.92■□□□□ 0.46
COL12A1-205ENST00000425443 SENP3-EIF4A1A0A087X0R7 540 aa17.92■□□□□ 0.46
COL12A1-205ENST00000425443 KIF14Q15058 1648 aa17.92■□□□□ 0.46
COL12A1-205ENST00000425443 FAM9BQ8IZU0 186 aa17.91■□□□□ 0.46
COL12A1-205ENST00000425443 NBPF8Q3BBV2 869 aa17.9■□□□□ 0.46
COL12A1-205ENST00000425443 NCOA1Q15788 1441 aa17.9■□□□□ 0.46
COL12A1-205ENST00000425443 PKD2Q13563 968 aa17.89■□□□□ 0.45
COL12A1-205ENST00000425443 RPRD2Q5VT52 1461 aaKnown RBP17.88■□□□□ 0.45
COL12A1-205ENST00000425443 PTPRGP23470 1445 aa17.88■□□□□ 0.45
COL12A1-205ENST00000425443 PODXL2Q9NZ53 605 aa17.88■□□□□ 0.45
COL12A1-205ENST00000425443 CNTLNQ9NXG0 1405 aa17.87■□□□□ 0.45
COL12A1-205ENST00000425443 ATP10BO94823 1461 aa17.86■□□□□ 0.45
COL12A1-205ENST00000425443 MSH5O43196 834 aa17.85■□□□□ 0.45
COL12A1-205ENST00000425443 HNRNPMP52272 730 aaKnown RBP eCLIP17.85■□□□□ 0.45
COL12A1-205ENST00000425443 ANKRD50Q9ULJ7 1429 aa17.84■□□□□ 0.45
COL12A1-205ENST00000425443 CCDC7Q96M83 1385 aa17.84■□□□□ 0.45
COL12A1-205ENST00000425443 NUP155O75694 1391 aa17.83■□□□□ 0.44
COL12A1-205ENST00000425443 TEX14Q8IWB6 1497 aa17.82■□□□□ 0.44
COL12A1-205ENST00000425443 PRKRIP1Q9H875 184 aaPredicted RBP17.82■□□□□ 0.44
COL12A1-205ENST00000425443 ADCY10Q96PN6 1610 aa17.82■□□□□ 0.44
COL12A1-205ENST00000425443 ABCA8O94911 1581 aa17.81■□□□□ 0.44
COL12A1-205ENST00000425443 MRS2Q9HD23 443 aa17.81■□□□□ 0.44
COL12A1-205ENST00000425443 ADGBQ8N7X0 1667 aa17.8■□□□□ 0.44
COL12A1-205ENST00000425443 PZPP20742 1482 aa17.8■□□□□ 0.44
COL12A1-205ENST00000425443 C9orf84Q5VXU9 1444 aa17.8■□□□□ 0.44
COL12A1-205ENST00000425443 KIAA1107Q9UPP5 1409 aa17.8■□□□□ 0.44
COL12A1-205ENST00000425443 ADGRL2O95490 1459 aa17.78■□□□□ 0.44
COL12A1-205ENST00000425443 SPATA31E1Q6ZUB1 1445 aa17.78■□□□□ 0.44
COL12A1-205ENST00000425443 KIF7Q2M1P5 1343 aa17.78■□□□□ 0.44
COL12A1-205ENST00000425443 PKNOX2Q96KN3 472 aa17.77■□□□□ 0.44
COL12A1-205ENST00000425443 KDM2AQ9Y2K7 1162 aa17.76■□□□□ 0.43
COL12A1-205ENST00000425443 CDC42BPAQ5VT25 1732 aa17.76■□□□□ 0.43
COL12A1-205ENST00000425443 ABCC10Q5T3U5 1492 aa17.75■□□□□ 0.43
COL12A1-205ENST00000425443 KIF15Q9NS87 1388 aa17.75■□□□□ 0.43
COL12A1-205ENST00000425443 CROCC2H7BZ55 1655 aa17.74■□□□□ 0.43
COL12A1-205ENST00000425443 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.74■□□□□ 0.43
COL12A1-205ENST00000425443 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.72■□□□□ 0.43
COL12A1-205ENST00000425443 SHANK2Q9UPX8 1470 aa17.7■□□□□ 0.42
COL12A1-205ENST00000425443 POLR1AO95602 1720 aaPredicted RBP17.7■□□□□ 0.42
COL12A1-205ENST00000425443 RSPH4AQ5TD94 716 aa17.7■□□□□ 0.42
COL12A1-205ENST00000425443 USP47Q96K76 1375 aa17.69■□□□□ 0.42
COL12A1-205ENST00000425443 BCORL1Q5H9F3 1711 aa17.69■□□□□ 0.42
COL12A1-205ENST00000425443 B4GALNT3Q6L9W6 998 aa17.69■□□□□ 0.42
COL12A1-205ENST00000425443 DCAF11Q8TEB1 546 aa17.69■□□□□ 0.42
COL12A1-205ENST00000425443 CARD11Q9BXL7 1154 aa17.69■□□□□ 0.42
COL12A1-205ENST00000425443 ZBED9Q6R2W3 1325 aa17.68■□□□□ 0.42
COL12A1-205ENST00000425443 CHD1O14646 1710 aa17.67■□□□□ 0.42
COL12A1-205ENST00000425443 CCDC141Q6ZP82 1450 aa17.66■□□□□ 0.42
COL12A1-205ENST00000425443 PPP4R2Q9NY27 417 aa17.66■□□□□ 0.42
COL12A1-205ENST00000425443 DHX29Q7Z478 1369 aaKnown RBP17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms