RNA–Protein interactions for RNA: ENST00000425413.5

UBR4-207, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 2,954 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-207ENST00000425413 DAPK1P53355 1430 aa16.41■□□□□ 0.22
UBR4-207ENST00000425413 ABCC5O15440 1437 aa16.4■□□□□ 0.22
UBR4-207ENST00000425413 PLEKHD1A6NEE1 506 aa16.39■□□□□ 0.21
UBR4-207ENST00000425413 TROQ12816 1431 aaPredicted RBP16.39■□□□□ 0.21
UBR4-207ENST00000425413 SLC4A1APQ9BWU0 796 aaKnown RBP16.39■□□□□ 0.21
UBR4-207ENST00000425413 NUP160Q12769 1436 aa16.39■□□□□ 0.21
UBR4-207ENST00000425413 DENND4BO75064 1496 aaPredicted RBP16.38■□□□□ 0.21
UBR4-207ENST00000425413 L3MBTL2Q969R5 705 aa16.36■□□□□ 0.21
UBR4-207ENST00000425413 KIF14Q15058 1648 aa16.34■□□□□ 0.21
UBR4-207ENST00000425413 GPATCH8Q9UKJ3 1502 aaKnown RBP16.33■□□□□ 0.2
UBR4-207ENST00000425413 CAMSAP2Q08AD1 1489 aa16.32■□□□□ 0.2
UBR4-207ENST00000425413 GCC2Q8IWJ2 1684 aa16.32■□□□□ 0.2
UBR4-207ENST00000425413 AKNAQ7Z591 1439 aa16.32■□□□□ 0.2
UBR4-207ENST00000425413 HSPA5P11021 654 aaKnown RBP16.32■□□□□ 0.2
UBR4-207ENST00000425413 ANP32CO43423 234 aa16.31■□□□□ 0.2
UBR4-207ENST00000425413 PTPRGP23470 1445 aa16.3■□□□□ 0.2
UBR4-207ENST00000425413 ATP10BO94823 1461 aa16.3■□□□□ 0.2
UBR4-207ENST00000425413 HNRNPMP52272 730 aaKnown RBP eCLIP16.29■□□□□ 0.2
UBR4-207ENST00000425413 ROCK1Q13464 1354 aa16.29■□□□□ 0.2
UBR4-207ENST00000425413 ZNF326Q5BKZ1 582 aaKnown RBP16.29■□□□□ 0.2
UBR4-207ENST00000425413 DNMT1P26358 1616 aaKnown RBP16.29■□□□□ 0.2
UBR4-207ENST00000425413 KDM5BQ9UGL1 1544 aa16.28■□□□□ 0.2
UBR4-207ENST00000425413 NBPF8Q3BBV2 869 aa16.26■□□□□ 0.19
UBR4-207ENST00000425413 NCOA1Q15788 1441 aa16.25■□□□□ 0.19
UBR4-207ENST00000425413 ANKRD30BQ9BXX2 1392 aa16.25■□□□□ 0.19
UBR4-207ENST00000425413 EIF4G2P78344 907 aaKnown RBP eCLIP16.25■□□□□ 0.19
UBR4-207ENST00000425413 PKD2Q13563 968 aa16.25■□□□□ 0.19
UBR4-207ENST00000425413 TSPY4P0CV99 314 aa16.23■□□□□ 0.19
UBR4-207ENST00000425413 TSPY10P0CW01 314 aa16.23■□□□□ 0.19
UBR4-207ENST00000425413 WASHC2AQ641Q2 1341 aa16.23■□□□□ 0.19
UBR4-207ENST00000425413 ABCA8O94911 1581 aa16.22■□□□□ 0.19
UBR4-207ENST00000425413 ANKRD30AQ9BXX3 1397 aa16.22■□□□□ 0.19
UBR4-207ENST00000425413 CNGB1Q14028 1251 aaPredicted RBP16.22■□□□□ 0.19
UBR4-207ENST00000425413 C11orf95C9JLR9 678 aaPredicted RBP16.2■□□□□ 0.18
UBR4-207ENST00000425413 POLR3GLQ9BT43 218 aa16.19■□□□□ 0.18
UBR4-207ENST00000425413 ANKRD50Q9ULJ7 1429 aa16.19■□□□□ 0.18
UBR4-207ENST00000425413 NUP155O75694 1391 aa16.19■□□□□ 0.18
UBR4-207ENST00000425413 PZPP20742 1482 aa16.18■□□□□ 0.18
UBR4-207ENST00000425413 ITSN2Q9NZM3 1697 aa16.18■□□□□ 0.18
UBR4-207ENST00000425413 ABCC10Q5T3U5 1492 aa16.17■□□□□ 0.18
UBR4-207ENST00000425413 RPRD2Q5VT52 1461 aaKnown RBP16.17■□□□□ 0.18
UBR4-207ENST00000425413 C9orf84Q5VXU9 1444 aa16.17■□□□□ 0.18
UBR4-207ENST00000425413 SUPT16HQ9Y5B9 1047 aaKnown RBP16.17■□□□□ 0.18
UBR4-207ENST00000425413 CHD1O14646 1710 aa16.16■□□□□ 0.18
UBR4-207ENST00000425413 ERCC6L2Q5T890 1561 aa16.15■□□□□ 0.18
UBR4-207ENST00000425413 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.15■□□□□ 0.185e-7■■■□□ 15.4
UBR4-207ENST00000425413 BCANQ96GW7 911 aa16.14■□□□□ 0.17
UBR4-207ENST00000425413 KDM2AQ9Y2K7 1162 aa16.14■□□□□ 0.17
UBR4-207ENST00000425413 CCER2I3L3R5 266 aa16.14■□□□□ 0.17
UBR4-207ENST00000425413 ADCY10Q96PN6 1610 aa16.14■□□□□ 0.17
UBR4-207ENST00000425413 KIF15Q9NS87 1388 aa16.13■□□□□ 0.17
UBR4-207ENST00000425413 CDC42BPAQ5VT25 1732 aa16.13■□□□□ 0.17
UBR4-207ENST00000425413 TEX14Q8IWB6 1497 aa16.12■□□□□ 0.17
UBR4-207ENST00000425413 KIAA1107Q9UPP5 1409 aa16.12■□□□□ 0.17
UBR4-207ENST00000425413 ADGRL2O95490 1459 aa16.11■□□□□ 0.17
UBR4-207ENST00000425413 CCDC184Q52MB2 194 aa16.08■□□□□ 0.17
UBR4-207ENST00000425413 ADGBQ8N7X0 1667 aa16.08■□□□□ 0.16
UBR4-207ENST00000425413 HNRNPUQ00839 825 aaKnown RBP eCLIP16.07■□□□□ 0.16
UBR4-207ENST00000425413 CCDC7Q96M83 1385 aa16.07■□□□□ 0.16
UBR4-207ENST00000425413 FKBP8Q14318 412 aa16.06■□□□□ 0.16
UBR4-207ENST00000425413 KIF7Q2M1P5 1343 aa16.06■□□□□ 0.16
UBR4-207ENST00000425413 CROCC2H7BZ55 1655 aa16.06■□□□□ 0.16
UBR4-207ENST00000425413 MBD5Q9P267 1494 aa16.06■□□□□ 0.16
UBR4-207ENST00000425413 RGL3Q3MIN7 710 aa16.05■□□□□ 0.16
UBR4-207ENST00000425413 ARHGAP5Q13017 1502 aa16.05■□□□□ 0.16
UBR4-207ENST00000425413 DCAF11Q8TEB1 546 aa16.05■□□□□ 0.16
UBR4-207ENST00000425413 SAMD9LQ8IVG5 1584 aa16.03■□□□□ 0.16
UBR4-207ENST00000425413 CCDC141Q6ZP82 1450 aa16.03■□□□□ 0.16
UBR4-207ENST00000425413 FAM9BQ8IZU0 186 aa16.02■□□□□ 0.16
UBR4-207ENST00000425413 CNTLNQ9NXG0 1405 aa16.02■□□□□ 0.16
UBR4-207ENST00000425413 SYCP2Q9BX26 1530 aa16.02■□□□□ 0.16
UBR4-207ENST00000425413 SHANK2Q9UPX8 1470 aa16.02■□□□□ 0.15
UBR4-207ENST00000425413 TTC37Q6PGP7 1564 aa16.01■□□□□ 0.15
UBR4-207ENST00000425413 CARD11Q9BXL7 1154 aa16.01■□□□□ 0.15
UBR4-207ENST00000425413 USP47Q96K76 1375 aa16.01■□□□□ 0.15
UBR4-207ENST00000425413 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16■□□□□ 0.153e-7■□□□□ 11.1
UBR4-207ENST00000425413 PRKRIP1Q9H875 184 aaPredicted RBP15.99■□□□□ 0.15
UBR4-207ENST00000425413 CDC42BPBQ9Y5S2 1711 aa15.99■□□□□ 0.15
UBR4-207ENST00000425413 MRS2Q9HD23 443 aa15.99■□□□□ 0.15
UBR4-207ENST00000425413 ABCC2Q92887 1545 aa15.98■□□□□ 0.15
UBR4-207ENST00000425413 SPATA31E1Q6ZUB1 1445 aa15.98■□□□□ 0.15
UBR4-207ENST00000425413 SENP3-EIF4A1A0A087X0R7 540 aa15.98■□□□□ 0.15
UBR4-207ENST00000425413 RSPH4AQ5TD94 716 aa15.97■□□□□ 0.15
UBR4-207ENST00000425413 SHROOM2Q13796 1616 aa15.97■□□□□ 0.15
UBR4-207ENST00000425413 MYT1LQ9UL68 1186 aa15.96■□□□□ 0.15
UBR4-207ENST00000425413 PREX2Q70Z35 1606 aa15.96■□□□□ 0.15
UBR4-207ENST00000425413 NEFLP07196 543 aa15.96■□□□□ 0.15
UBR4-207ENST00000425413 EFCAB2Q5VUJ9 269 aa15.96■□□□□ 0.14
UBR4-207ENST00000425413 AFAP1Q8N556 730 aa15.95■□□□□ 0.14
UBR4-207ENST00000425413 ARHGEF5Q12774 1597 aa15.95■□□□□ 0.14
UBR4-207ENST00000425413 PLEKHH2Q8IVE3 1493 aa15.94■□□□□ 0.14
UBR4-207ENST00000425413 ST20-MTHFSA0A0A6YYL1 179 aa15.94■□□□□ 0.14
UBR4-207ENST00000425413 IRX6P78412 446 aaPredicted RBP15.94■□□□□ 0.14
UBR4-207ENST00000425413 ARHGEF12Q9NZN5 1544 aa15.93■□□□□ 0.14
UBR4-207ENST00000425413 FAM135AQ9P2D6 1515 aa15.92■□□□□ 0.14
UBR4-207ENST00000425413 CCDC144AA2RUR9 1427 aa15.91■□□□□ 0.14
UBR4-207ENST00000425413 NBPF1Q3BBV0 1214 aa15.9■□□□□ 0.14
UBR4-207ENST00000425413 TRAPPC8Q9Y2L5 1435 aa15.89■□□□□ 0.13
UBR4-207ENST00000425413 ROCK2O75116 1388 aaKnown RBP15.89■□□□□ 0.13
UBR4-207ENST00000425413 PLCH2O75038 1416 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms