RNA–Protein interactions for RNA: ENST00000424270.6

SDCBP-203, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SDCBP, Length 1,277 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-203ENST00000424270 STRCQ7RTU9 1775 aa11.08□□□□□ -0.64
SDCBP-203ENST00000424270 ESF1Q9H501 851 aaKnown RBP11.08□□□□□ -0.64
SDCBP-203ENST00000424270 EFCAB5A4FU69 1503 aa11.08□□□□□ -0.64
SDCBP-203ENST00000424270 PIP4K2BP78356 416 aa11.07□□□□□ -0.64
SDCBP-203ENST00000424270 P3H3Q8IVL6 736 aa11.07□□□□□ -0.64
SDCBP-203ENST00000424270 MYT1LQ9UL68 1186 aa11.07□□□□□ -0.64
SDCBP-203ENST00000424270 MED1Q15648 1581 aaPredicted RBP11.07□□□□□ -0.64
SDCBP-203ENST00000424270 ATP10BO94823 1461 aa11.06□□□□□ -0.64
SDCBP-203ENST00000424270 LTBP4Q8N2S1 1624 aa11.05□□□□□ -0.64
SDCBP-203ENST00000424270 FHOD3Q2V2M9 1422 aa11.03□□□□□ -0.64
SDCBP-203ENST00000424270 HSPA1LP34931 641 aa11.03□□□□□ -0.64
SDCBP-203ENST00000424270 RICTORQ6R327 1708 aa11.02□□□□□ -0.65
SDCBP-203ENST00000424270 CFAP74Q9C0B2 1584 aa11.02□□□□□ -0.65
SDCBP-203ENST00000424270 ZNF335Q9H4Z2 1342 aaPredicted RBP11.01□□□□□ -0.65
SDCBP-203ENST00000424270 MAGI2Q86UL8 1455 aa11□□□□□ -0.65
SDCBP-203ENST00000424270 ARHGEF12Q9NZN5 1544 aa11□□□□□ -0.65
SDCBP-203ENST00000424270 CTTNBP2Q8WZ74 1663 aa11□□□□□ -0.65
SDCBP-203ENST00000424270 SIGLEC1Q9BZZ2 1709 aa11□□□□□ -0.65
SDCBP-203ENST00000424270 ZMYM4Q5VZL5 1548 aa10.99□□□□□ -0.65
SDCBP-203ENST00000424270 PLEKHD1A6NEE1 506 aa10.99□□□□□ -0.65
SDCBP-203ENST00000424270 C9orf84Q5VXU9 1444 aa10.99□□□□□ -0.65
SDCBP-203ENST00000424270 ATP10AO60312 1499 aa10.98□□□□□ -0.65
SDCBP-203ENST00000424270 HECW1Q76N89 1606 aa10.98□□□□□ -0.65
SDCBP-203ENST00000424270 TOM1O60784 492 aa10.97□□□□□ -0.65
SDCBP-203ENST00000424270 NCOA1Q15788 1441 aa10.96□□□□□ -0.65
SDCBP-203ENST00000424270 NCKAP5LQ9HCH0 1330 aa10.96□□□□□ -0.65
SDCBP-203ENST00000424270 SCAPERQ9BY12 1400 aa10.95□□□□□ -0.66
SDCBP-203ENST00000424270 RANGAP1P46060 587 aaPredicted RBP10.93□□□□□ -0.66
SDCBP-203ENST00000424270 CAMSAP1Q5T5Y3 1602 aa10.93□□□□□ -0.66
SDCBP-203ENST00000424270 RAPGEF6Q8TEU7 1601 aa10.93□□□□□ -0.66
SDCBP-203ENST00000424270 TRAPPC8Q9Y2L5 1435 aa10.92□□□□□ -0.66
SDCBP-203ENST00000424270 POTEDQ86YR6 584 aa10.92□□□□□ -0.66
SDCBP-203ENST00000424270 SETD1BQ9UPS6 1966 aaKnown RBP10.9□□□□□ -0.66
SDCBP-203ENST00000424270 C3P01024 1663 aa10.89□□□□□ -0.67
SDCBP-203ENST00000424270 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.89□□□□□ -0.67
SDCBP-203ENST00000424270 PKD2Q13563 968 aa10.88□□□□□ -0.67
SDCBP-203ENST00000424270 EFCAB2Q5VUJ9 269 aa10.87□□□□□ -0.67
SDCBP-203ENST00000424270 NUP153P49790 1475 aaKnown RBP10.87□□□□□ -0.67
SDCBP-203ENST00000424270 AFAP1Q8N556 730 aa10.84□□□□□ -0.67
SDCBP-203ENST00000424270 ATP1B4Q9UN42 357 aaPredicted RBP10.84□□□□□ -0.67
SDCBP-203ENST00000424270 ZNF518AQ6AHZ1 1483 aa10.84□□□□□ -0.67
SDCBP-203ENST00000424270 CNTLNQ9NXG0 1405 aa10.84□□□□□ -0.67
SDCBP-203ENST00000424270 PLCH2O75038 1416 aa10.83□□□□□ -0.68
SDCBP-203ENST00000424270 PTPRKQ15262 1439 aa10.83□□□□□ -0.68
SDCBP-203ENST00000424270 SUPT6HQ7KZ85 1726 aaKnown RBP10.81□□□□□ -0.68
SDCBP-203ENST00000424270 NPATQ14207 1427 aa10.81□□□□□ -0.68
SDCBP-203ENST00000424270 CPS1P31327 1500 aa10.8□□□□□ -0.68
SDCBP-203ENST00000424270 PLA2R1Q13018 1463 aa10.8□□□□□ -0.68
SDCBP-203ENST00000424270 DIP2CQ9Y2E4 1556 aa10.79□□□□□ -0.68
SDCBP-203ENST00000424270 ARHGAP5Q13017 1502 aa10.79□□□□□ -0.68
SDCBP-203ENST00000424270 RGS17Q9UGC6 210 aaPredicted RBP10.78□□□□□ -0.68
SDCBP-203ENST00000424270 ZMYM3Q14202 1370 aa10.77□□□□□ -0.68
SDCBP-203ENST00000424270 SAMD9Q5K651 1589 aa10.77□□□□□ -0.68
SDCBP-203ENST00000424270 SHANK2Q9UPX8 1470 aa10.77□□□□□ -0.69
SDCBP-203ENST00000424270 AGLP35573 1532 aa10.77□□□□□ -0.69
SDCBP-203ENST00000424270 TCOF1Q13428 1488 aaKnown RBP10.76□□□□□ -0.69
SDCBP-203ENST00000424270 CEP170BQ9Y4F5 1589 aaPredicted RBP10.76□□□□□ -0.69
SDCBP-203ENST00000424270 MYO3AQ8NEV4 1616 aa10.76□□□□□ -0.69
SDCBP-203ENST00000424270 MYO5CQ9NQX4 1742 aa10.75□□□□□ -0.69
SDCBP-203ENST00000424270 REREQ9P2R6 1566 aa10.75□□□□□ -0.69
SDCBP-203ENST00000424270 POTEAQ6S8J7 498 aa10.75□□□□□ -0.69
SDCBP-203ENST00000424270 CDK11AQ9UQ88 783 aaPredicted RBP10.75□□□□□ -0.69
SDCBP-203ENST00000424270 ABCA6Q8N139 1617 aa10.75□□□□□ -0.69
SDCBP-203ENST00000424270 PRXQ9BXM0 1461 aa10.74□□□□□ -0.69
SDCBP-203ENST00000424270 CDK13Q14004 1512 aaKnown RBP10.74□□□□□ -0.69
SDCBP-203ENST00000424270 KDM5CP41229 1560 aa10.73□□□□□ -0.69
SDCBP-203ENST00000424270 ZNF142P52746 1687 aaPredicted RBP10.72□□□□□ -0.69
SDCBP-203ENST00000424270 MROH2AA6NES4 1674 aa10.71□□□□□ -0.69
SDCBP-203ENST00000424270 GGT6Q6P531 493 aa10.71□□□□□ -0.69
SDCBP-203ENST00000424270 MLH3Q9UHC1 1453 aa10.71□□□□□ -0.69
SDCBP-203ENST00000424270 SETD1AO15047 1707 aaKnown RBP10.7□□□□□ -0.7
SDCBP-203ENST00000424270 ANKLE2Q86XL3 938 aa10.7□□□□□ -0.7
SDCBP-203ENST00000424270 CLTCQ00610 1675 aaKnown RBP10.69□□□□□ -0.7
SDCBP-203ENST00000424270 KIF14Q15058 1648 aa10.69□□□□□ -0.7
SDCBP-203ENST00000424270 CLIP1P30622 1438 aa10.68□□□□□ -0.7
SDCBP-203ENST00000424270 A2ML1A8K2U0 1454 aa10.68□□□□□ -0.7
SDCBP-203ENST00000424270 TRIM52Q96A61 297 aa10.67□□□□□ -0.7
SDCBP-203ENST00000424270 POLR1AO95602 1720 aaPredicted RBP10.67□□□□□ -0.7
SDCBP-203ENST00000424270 UPF1Q92900 1129 aaKnown RBP eCLIP10.66□□□□□ -0.7
SDCBP-203ENST00000424270 ZNF777Q9ULD5 760 aaPredicted RBP10.66□□□□□ -0.7
SDCBP-203ENST00000424270 RNF17Q9BXT8 1623 aaKnown RBP10.66□□□□□ -0.7
SDCBP-203ENST00000424270 DNMT1P26358 1616 aaKnown RBP10.65□□□□□ -0.7
SDCBP-203ENST00000424270 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.65□□□□□ -0.71
SDCBP-203ENST00000424270 SPAG9O60271 1321 aaKnown RBP10.64□□□□□ -0.71
SDCBP-203ENST00000424270 MEX3CQ5U5Q3 659 aaKnown RBP10.64□□□□□ -0.71
SDCBP-203ENST00000424270 THEMISQ8N1K5 641 aaPredicted RBP10.64□□□□□ -0.71
SDCBP-203ENST00000424270 ALKQ9UM73 1620 aa10.64□□□□□ -0.71
SDCBP-203ENST00000424270 NPHP4O75161 1426 aaPredicted RBP10.64□□□□□ -0.71
SDCBP-203ENST00000424270 VWDEQ8N2E2 1590 aa10.63□□□□□ -0.71
SDCBP-203ENST00000424270 NEURL4Q96JN8 1562 aa10.63□□□□□ -0.71
SDCBP-203ENST00000424270 ABCC1P33527 1531 aa10.62□□□□□ -0.71
SDCBP-203ENST00000424270 LRRC7Q96NW7 1537 aa10.62□□□□□ -0.71
SDCBP-203ENST00000424270 TNRQ92752 1358 aa10.62□□□□□ -0.71
SDCBP-203ENST00000424270 CSRNP3Q8WYN3 585 aa10.61□□□□□ -0.71
SDCBP-203ENST00000424270 KIDINS220Q9ULH0 1771 aa10.61□□□□□ -0.71
SDCBP-203ENST00000424270 ITSN2Q9NZM3 1697 aa10.6□□□□□ -0.71
SDCBP-203ENST00000424270 TROQ12816 1431 aaPredicted RBP10.6□□□□□ -0.71
SDCBP-203ENST00000424270 FAM135AQ9P2D6 1515 aa10.59□□□□□ -0.71
SDCBP-203ENST00000424270 FBXO31Q5XUX0 539 aaPredicted RBP10.59□□□□□ -0.71
SDCBP-203ENST00000424270 SYNMO15061 1565 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms