RNA–Protein interactions for RNA: ENST00000416188.2

PHRF1-203, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PHRF1, Length 5,227 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-203ENST00000416188 GRIN2BQ13224 1484 aa20.51■□□□□ 0.87
PHRF1-203ENST00000416188 IGF1RP08069 1367 aa20.5■□□□□ 0.87
PHRF1-203ENST00000416188 FOXD1Q16676 465 aa20.5■□□□□ 0.87
PHRF1-203ENST00000416188 NUDCQ9Y266 331 aa20.5■□□□□ 0.87
PHRF1-203ENST00000416188 NPHP1O15259 732 aa20.49■□□□□ 0.87
PHRF1-203ENST00000416188 NUTM2DQ5VT03 806 aaPredicted RBP20.49■□□□□ 0.87
PHRF1-203ENST00000416188 TMF1P82094 1093 aa20.48■□□□□ 0.87
PHRF1-203ENST00000416188 MYH16Q9H6N6 1097 aa20.46■□□□□ 0.87
PHRF1-203ENST00000416188 IFT140Q96RY7 1462 aa20.46■□□□□ 0.87
PHRF1-203ENST00000416188 MAPK8IP3Q9UPT6 1336 aa20.45■□□□□ 0.86
PHRF1-203ENST00000416188 CFTRP13569 1480 aa20.45■□□□□ 0.86
PHRF1-203ENST00000416188 CCDC9Q9Y3X0 531 aaKnown RBP20.45■□□□□ 0.86
PHRF1-203ENST00000416188 CSB-PGBD3P0DP91 1061 aa20.41■□□□□ 0.86
PHRF1-203ENST00000416188 SETD5Q9C0A6 1442 aa20.41■□□□□ 0.86
PHRF1-203ENST00000416188 RUSC2Q8N2Y8 1516 aa20.41■□□□□ 0.86
PHRF1-203ENST00000416188 U2SURPO15042 1029 aaKnown RBP20.4■□□□□ 0.86
PHRF1-203ENST00000416188 HDGFL2Q7Z4V5 671 aaPredicted RBP20.4■□□□□ 0.86
PHRF1-203ENST00000416188 MPHOSPH9Q99550 1183 aa20.4■□□□□ 0.86
PHRF1-203ENST00000416188 NEUROD2Q15784 382 aa20.4■□□□□ 0.86
PHRF1-203ENST00000416188 PRG4Q92954 1404 aaPredicted RBP20.39■□□□□ 0.86
PHRF1-203ENST00000416188 LAS1LQ9Y4W2 734 aaKnown RBP20.39■□□□□ 0.85
PHRF1-203ENST00000416188 HMGXB3Q12766 1538 aa20.38■□□□□ 0.85
PHRF1-203ENST00000416188 CC2D1BQ5T0F9 858 aaKnown RBP20.36■□□□□ 0.85
PHRF1-203ENST00000416188 SUPT16HQ9Y5B9 1047 aaKnown RBP20.36■□□□□ 0.85
PHRF1-203ENST00000416188 NGDNQ8NEJ9 315 aaKnown RBP20.33■□□□□ 0.84
PHRF1-203ENST00000416188 NUTM2FA1L443 756 aa20.32■□□□□ 0.84
PHRF1-203ENST00000416188 MORC1Q86VD1 984 aa20.31■□□□□ 0.84
PHRF1-203ENST00000416188 TOPBP1Q92547 1522 aa20.3■□□□□ 0.84
PHRF1-203ENST00000416188 ANP32EQ9BTT0 268 aa20.28■□□□□ 0.84
PHRF1-203ENST00000416188 PNNQ9H307 717 aaKnown RBP20.27■□□□□ 0.84
PHRF1-203ENST00000416188 SNAPC4Q5SXM2 1469 aa20.26■□□□□ 0.83
PHRF1-203ENST00000416188 BECN1Q14457 450 aa20.26■□□□□ 0.83
PHRF1-203ENST00000416188 ROCK2O75116 1388 aaKnown RBP20.26■□□□□ 0.83
PHRF1-203ENST00000416188 DDRGK1Q96HY6 314 aa20.23■□□□□ 0.83
PHRF1-203ENST00000416188 BICRAQ9NZM4 1560 aa20.22■□□□□ 0.83
PHRF1-203ENST00000416188 VGFO15240 615 aaPredicted RBP20.22■□□□□ 0.83
PHRF1-203ENST00000416188 POLA1P09884 1462 aaPredicted RBP20.22■□□□□ 0.83
PHRF1-203ENST00000416188 FTSJ3Q8IY81 847 aaKnown RBP20.21■□□□□ 0.83
PHRF1-203ENST00000416188 RAB3GAP2Q9H2M9 1393 aa20.21■□□□□ 0.83
PHRF1-203ENST00000416188 TIMELESSQ9UNS1 1208 aa20.2■□□□□ 0.83
PHRF1-203ENST00000416188 EIF3AQ14152 1382 aaKnown RBP20.2■□□□□ 0.82
PHRF1-203ENST00000416188 TRAK1Q9UPV9 953 aa20.2■□□□□ 0.82
PHRF1-203ENST00000416188 PRDM2Q13029 1718 aa20.19■□□□□ 0.82
PHRF1-203ENST00000416188 SYNJ2O15056 1496 aa20.19■□□□□ 0.82
PHRF1-203ENST00000416188 RTF1Q92541 710 aaKnown RBP20.18■□□□□ 0.82
PHRF1-203ENST00000416188 TERF2IPQ9NYB0 399 aa20.18■□□□□ 0.82
PHRF1-203ENST00000416188 AFAP1Q8N556 730 aa20.17■□□□□ 0.82
PHRF1-203ENST00000416188 FRAT1Q92837 279 aaPredicted RBP20.16■□□□□ 0.82
PHRF1-203ENST00000416188 LAMC3Q9Y6N6 1575 aa20.15■□□□□ 0.82
PHRF1-203ENST00000416188 RGS3P49796 1198 aa20.14■□□□□ 0.82
PHRF1-203ENST00000416188 CCDC144AA2RUR9 1427 aa20.14■□□□□ 0.81
PHRF1-203ENST00000416188 NCLP19338 710 aaKnown RBP20.13■□□□□ 0.81
PHRF1-203ENST00000416188 MEX3CQ5U5Q3 659 aaKnown RBP20.13■□□□□ 0.81
PHRF1-203ENST00000416188 ZNF644Q9H582 1327 aaPredicted RBP20.12■□□□□ 0.81
PHRF1-203ENST00000416188 GOLGA6L22H0YM25 854 aa20.12■□□□□ 0.81
PHRF1-203ENST00000416188 HSPA5P11021 654 aaKnown RBP20.12■□□□□ 0.81
PHRF1-203ENST00000416188 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.12■□□□□ 0.81
PHRF1-203ENST00000416188 PPP4R2Q9NY27 417 aa20.12■□□□□ 0.81
PHRF1-203ENST00000416188 ZNF330Q9Y3S2 320 aaPredicted RBP20.11■□□□□ 0.81
PHRF1-203ENST00000416188 UACAQ9BZF9 1416 aa20.1■□□□□ 0.81
PHRF1-203ENST00000416188 DNMBPQ6XZF7 1577 aa20.1■□□□□ 0.81
PHRF1-203ENST00000416188 AMPHP49418 695 aa20.1■□□□□ 0.81
PHRF1-203ENST00000416188 MYOM3Q5VTT5 1437 aa20.08■□□□□ 0.81
PHRF1-203ENST00000416188 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.08■□□□□ 0.81
PHRF1-203ENST00000416188 LTV1Q96GA3 475 aaPredicted RBP20.08■□□□□ 0.81
PHRF1-203ENST00000416188 L3MBTL2Q969R5 705 aa20.08■□□□□ 0.81
PHRF1-203ENST00000416188 ARHGAP5Q13017 1502 aa20.08■□□□□ 0.8
PHRF1-203ENST00000416188 GLIPR1L2Q4G1C9 344 aa20.08■□□□□ 0.8
PHRF1-203ENST00000416188 TRIM44Q96DX7 344 aaPredicted RBP20.07■□□□□ 0.8
PHRF1-203ENST00000416188 ATF3P18847 181 aa20.07■□□□□ 0.8
PHRF1-203ENST00000416188 B4GALNT3Q6L9W6 998 aa20.06■□□□□ 0.8
PHRF1-203ENST00000416188 EVA1CP58658 441 aa20.06■□□□□ 0.8
PHRF1-203ENST00000416188 KIF15Q9NS87 1388 aa20.05■□□□□ 0.8
PHRF1-203ENST00000416188 TPRNQ4KMQ1 711 aa20.05■□□□□ 0.8
PHRF1-203ENST00000416188 CASC1Q6TDU7 716 aa20.05■□□□□ 0.8
PHRF1-203ENST00000416188 RAPGEF3O95398 923 aa20.04■□□□□ 0.8
PHRF1-203ENST00000416188 U2AF1L5P0DN76 240 aaPredicted RBP20.04■□□□□ 0.8
PHRF1-203ENST00000416188 U2AF1Q01081 240 aaKnown RBP eCLIP20.04■□□□□ 0.8
PHRF1-203ENST00000416188 CUX1P39880 1505 aa20.03■□□□□ 0.8
PHRF1-203ENST00000416188 GOLGA2Q08379 1002 aa20.03■□□□□ 0.8
PHRF1-203ENST00000416188 MINK1Q8N4C8 1332 aaPredicted RBP20.02■□□□□ 0.8
PHRF1-203ENST00000416188 OS9Q13438 667 aaPredicted RBP20.02■□□□□ 0.8
PHRF1-203ENST00000416188 PSME1Q06323 249 aa20■□□□□ 0.79
PHRF1-203ENST00000416188 SYNJ1O43426 1573 aa19.99■□□□□ 0.79
PHRF1-203ENST00000416188 CDK11BP21127 795 aaKnown RBP19.99■□□□□ 0.79
PHRF1-203ENST00000416188 KTN1Q86UP2 1357 aaKnown RBP19.99■□□□□ 0.79
PHRF1-203ENST00000416188 TXNDC2Q86VQ3 553 aa19.98■□□□□ 0.79
PHRF1-203ENST00000416188 POGZQ7Z3K3 1410 aa19.96■□□□□ 0.79
PHRF1-203ENST00000416188 THEMISQ8N1K5 641 aaPredicted RBP19.95■□□□□ 0.78
PHRF1-203ENST00000416188 PHF23Q9BUL5 403 aaPredicted RBP19.95■□□□□ 0.78
PHRF1-203ENST00000416188 EVC2Q86UK5 1308 aa19.95■□□□□ 0.78
PHRF1-203ENST00000416188 SCAPERQ9BY12 1400 aa19.95■□□□□ 0.78
PHRF1-203ENST00000416188 TMX4Q9H1E5 349 aaPredicted RBP19.95■□□□□ 0.78
PHRF1-203ENST00000416188 PTMAP06454 111 aaKnown RBP19.94■□□□□ 0.78
PHRF1-203ENST00000416188 ZRSR1Q15695 479 aaKnown RBP19.94■□□□□ 0.78
PHRF1-203ENST00000416188 CASKIN1Q8WXD9 1431 aa19.94■□□□□ 0.78
PHRF1-203ENST00000416188 PROSER2Q86WR7 435 aaPredicted RBP19.94■□□□□ 0.78
PHRF1-203ENST00000416188 MS4A1P11836 297 aa19.93■□□□□ 0.78
PHRF1-203ENST00000416188 KIAA0586Q9BVV6 1533 aa19.93■□□□□ 0.78
PHRF1-203ENST00000416188 CHMP4BQ9H444 224 aaKnown RBP19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms