RNA–Protein interactions for RNA: ENST00000410016.5

HOXD3-202, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HOXD3, Length 2,384 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-202ENST00000410016 MAGI1Q96QZ7 1491 aaPredicted RBP22.33■■□□□ 1.16
HOXD3-202ENST00000410016 HSPA5P11021 654 aaKnown RBP22.32■■□□□ 1.16
HOXD3-202ENST00000410016 L3MBTL2Q969R5 705 aa22.32■■□□□ 1.16
HOXD3-202ENST00000410016 ANKRD30BQ9BXX2 1392 aa22.32■■□□□ 1.16
HOXD3-202ENST00000410016 WASHC2AQ641Q2 1341 aa22.31■■□□□ 1.16
HOXD3-202ENST00000410016 PRG4Q92954 1404 aaPredicted RBP22.29■■□□□ 1.16
HOXD3-202ENST00000410016 CHMP7Q8WUX9 453 aaPredicted RBP22.29■■□□□ 1.16
HOXD3-202ENST00000410016 TROQ12816 1431 aaPredicted RBP22.29■■□□□ 1.16
HOXD3-202ENST00000410016 SYNJ2O15056 1496 aa22.28■■□□□ 1.16
HOXD3-202ENST00000410016 CEP170Q5SW79 1584 aa22.28■■□□□ 1.16
HOXD3-202ENST00000410016 PLB1Q6P1J6 1458 aa22.27■■□□□ 1.15
HOXD3-202ENST00000410016 EIF4G2P78344 907 aaKnown RBP eCLIP22.26■■□□□ 1.15
HOXD3-202ENST00000410016 ERCC6Q03468 1493 aa22.26■■□□□ 1.15
HOXD3-202ENST00000410016 RPRD2Q5VT52 1461 aaKnown RBP22.26■■□□□ 1.15
HOXD3-202ENST00000410016 GPATCH8Q9UKJ3 1502 aaKnown RBP22.23■■□□□ 1.15
HOXD3-202ENST00000410016 CFDP1Q9UEE9 299 aaPredicted RBP22.23■■□□□ 1.15
HOXD3-202ENST00000410016 NUP160Q12769 1436 aa22.22■■□□□ 1.15
HOXD3-202ENST00000410016 JPH4Q96JJ6 628 aa22.22■■□□□ 1.15
HOXD3-202ENST00000410016 SLC4A1APQ9BWU0 796 aaKnown RBP22.21■■□□□ 1.15
HOXD3-202ENST00000410016 NCOA1Q15788 1441 aa22.21■■□□□ 1.15
HOXD3-202ENST00000410016 CAMSAP2Q08AD1 1489 aa22.2■■□□□ 1.15
HOXD3-202ENST00000410016 TEX14Q8IWB6 1497 aa22.2■■□□□ 1.15
HOXD3-202ENST00000410016 NBPF8Q3BBV2 869 aa22.2■■□□□ 1.15
HOXD3-202ENST00000410016 FKBP8Q14318 412 aa22.19■■□□□ 1.14
HOXD3-202ENST00000410016 FBLN2P98095 1184 aa22.18■■□□□ 1.14
HOXD3-202ENST00000410016 CARMIL2Q6F5E8 1435 aa22.18■■□□□ 1.14
HOXD3-202ENST00000410016 C11orf95C9JLR9 678 aaPredicted RBP22.18■■□□□ 1.14
HOXD3-202ENST00000410016 PZPP20742 1482 aa22.17■■□□□ 1.14
HOXD3-202ENST00000410016 KIF14Q15058 1648 aa22.16■■□□□ 1.14
HOXD3-202ENST00000410016 ADCY10Q96PN6 1610 aa22.16■■□□□ 1.14
HOXD3-202ENST00000410016 TSHZ2Q9NRE2 1034 aa22.14■■□□□ 1.14
HOXD3-202ENST00000410016 ADGRL2O95490 1459 aa22.14■■□□□ 1.14
HOXD3-202ENST00000410016 ITSN2Q9NZM3 1697 aa22.14■■□□□ 1.13
HOXD3-202ENST00000410016 SPATA31E1Q6ZUB1 1445 aa22.13■■□□□ 1.13
HOXD3-202ENST00000410016 CNTLNQ9NXG0 1405 aa22.12■■□□□ 1.13
HOXD3-202ENST00000410016 CCDC7Q96M83 1385 aa22.12■■□□□ 1.13
HOXD3-202ENST00000410016 BCANQ96GW7 911 aa22.11■■□□□ 1.13
HOXD3-202ENST00000410016 ZNF777Q9ULD5 760 aaPredicted RBP22.11■■□□□ 1.13
HOXD3-202ENST00000410016 ABCA8O94911 1581 aa22.08■■□□□ 1.12
HOXD3-202ENST00000410016 ADGBQ8N7X0 1667 aa22.07■■□□□ 1.12
HOXD3-202ENST00000410016 ATP10BO94823 1461 aa22.07■■□□□ 1.12
HOXD3-202ENST00000410016 PLEKHD1A6NEE1 506 aa22.07■■□□□ 1.12
HOXD3-202ENST00000410016 ANKRD30AQ9BXX3 1397 aa22.07■■□□□ 1.12
HOXD3-202ENST00000410016 KIAA1107Q9UPP5 1409 aa22.06■■□□□ 1.12
HOXD3-202ENST00000410016 ABCC10Q5T3U5 1492 aa22.06■■□□□ 1.12
HOXD3-202ENST00000410016 CROCC2H7BZ55 1655 aa22.05■■□□□ 1.12
HOXD3-202ENST00000410016 NEFLP07196 543 aa22.05■■□□□ 1.12
HOXD3-202ENST00000410016 HNRNPUQ00839 825 aaKnown RBP eCLIP22.05■■□□□ 1.12
HOXD3-202ENST00000410016 PRKRIP1Q9H875 184 aaPredicted RBP22.04■■□□□ 1.12
HOXD3-202ENST00000410016 CCDC184Q52MB2 194 aa22.04■■□□□ 1.12
HOXD3-202ENST00000410016 MBD5Q9P267 1494 aa22.03■■□□□ 1.12
HOXD3-202ENST00000410016 ANKRD50Q9ULJ7 1429 aa22.03■■□□□ 1.12
HOXD3-202ENST00000410016 KIF7Q2M1P5 1343 aa22.03■■□□□ 1.12
HOXD3-202ENST00000410016 PKD2Q13563 968 aa22.02■■□□□ 1.12
HOXD3-202ENST00000410016 CDC42BPAQ5VT25 1732 aa22■■□□□ 1.11
HOXD3-202ENST00000410016 SHANK2Q9UPX8 1470 aa21.99■■□□□ 1.11
HOXD3-202ENST00000410016 C9orf84Q5VXU9 1444 aa21.97■■□□□ 1.11
HOXD3-202ENST00000410016 NUP155O75694 1391 aa21.93■■□□□ 1.1
HOXD3-202ENST00000410016 POLR1AO95602 1720 aaPredicted RBP21.93■■□□□ 1.1
HOXD3-202ENST00000410016 TSPY4P0CV99 314 aa21.91■■□□□ 1.1
HOXD3-202ENST00000410016 TSPY10P0CW01 314 aa21.91■■□□□ 1.1
HOXD3-202ENST00000410016 PTPRGP23470 1445 aa21.91■■□□□ 1.1
HOXD3-202ENST00000410016 USP47Q96K76 1375 aa21.9■■□□□ 1.1
HOXD3-202ENST00000410016 UHRF1BP1Q6BDS2 1440 aa21.89■■□□□ 1.1
HOXD3-202ENST00000410016 HNRNPMP52272 730 aaKnown RBP eCLIP21.89■■□□□ 1.1
HOXD3-202ENST00000410016 MRS2Q9HD23 443 aa21.89■■□□□ 1.1
HOXD3-202ENST00000410016 KDM5DQ9BY66 1539 aa21.89■■□□□ 1.09
HOXD3-202ENST00000410016 ARHGEF5Q12774 1597 aa21.87■■□□□ 1.09
HOXD3-202ENST00000410016 DHX29Q7Z478 1369 aaKnown RBP21.86■■□□□ 1.09
HOXD3-202ENST00000410016 KIF15Q9NS87 1388 aa21.86■■□□□ 1.09
HOXD3-202ENST00000410016 FAM9BQ8IZU0 186 aa21.86■■□□□ 1.09
HOXD3-202ENST00000410016 ZNF326Q5BKZ1 582 aaKnown RBP21.85■■□□□ 1.09
HOXD3-202ENST00000410016 BCORL1Q5H9F3 1711 aa21.85■■□□□ 1.09
HOXD3-202ENST00000410016 KDM5CP41229 1560 aa21.84■■□□□ 1.09
HOXD3-202ENST00000410016 ARID4BQ4LE39 1312 aaPredicted RBP21.84■■□□□ 1.09
HOXD3-202ENST00000410016 ZBED9Q6R2W3 1325 aa21.82■■□□□ 1.08
HOXD3-202ENST00000410016 RALGAPBQ86X10 1494 aa21.82■■□□□ 1.08
HOXD3-202ENST00000410016 ARHGEF12Q9NZN5 1544 aa21.82■■□□□ 1.08
HOXD3-202ENST00000410016 RSPH4AQ5TD94 716 aa21.8■■□□□ 1.08
HOXD3-202ENST00000410016 SAMD9LQ8IVG5 1584 aa21.8■■□□□ 1.08
HOXD3-202ENST00000410016 CCDC141Q6ZP82 1450 aa21.79■■□□□ 1.08
HOXD3-202ENST00000410016 CDC42BPBQ9Y5S2 1711 aa21.78■■□□□ 1.08
HOXD3-202ENST00000410016 IRX6P78412 446 aaPredicted RBP21.77■■□□□ 1.08
HOXD3-202ENST00000410016 PREX2Q70Z35 1606 aa21.76■■□□□ 1.07
HOXD3-202ENST00000410016 ERICH6BQ5W0A0 696 aa21.76■■□□□ 1.07
HOXD3-202ENST00000410016 CARD11Q9BXL7 1154 aa21.76■■□□□ 1.07
HOXD3-202ENST00000410016 RBM19Q9Y4C8 960 aaKnown RBP21.74■■□□□ 1.07
HOXD3-202ENST00000410016 FAM135AQ9P2D6 1515 aa21.73■■□□□ 1.07
HOXD3-202ENST00000410016 DCAF11Q8TEB1 546 aa21.73■■□□□ 1.07
HOXD3-202ENST00000410016 KDM2AQ9Y2K7 1162 aa21.73■■□□□ 1.07
HOXD3-202ENST00000410016 POLR3GLQ9BT43 218 aa21.72■■□□□ 1.07
HOXD3-202ENST00000410016 ROCK2O75116 1388 aaKnown RBP21.72■■□□□ 1.07
HOXD3-202ENST00000410016 SHROOM2Q13796 1616 aa21.71■■□□□ 1.07
HOXD3-202ENST00000410016 ST20-MTHFSA0A0A6YYL1 179 aa21.7■■□□□ 1.07
HOXD3-202ENST00000410016 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.69■■□□□ 1.06
HOXD3-202ENST00000410016 CHD1O14646 1710 aa21.68■■□□□ 1.06
HOXD3-202ENST00000410016 SYCP2Q9BX26 1530 aa21.68■■□□□ 1.06
HOXD3-202ENST00000410016 TTC37Q6PGP7 1564 aa21.68■■□□□ 1.06
HOXD3-202ENST00000410016 MAST1Q9Y2H9 1570 aa21.67■■□□□ 1.06
HOXD3-202ENST00000410016 PLA2R1Q13018 1463 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms