RNA–Protein interactions for RNA: ENST00000409953.5

UBE2F-204, Transcript of ubiquitin conjugating enzyme E2 F (putative), humanhuman

TSL 3 BASIC

Gene UBE2F, Length 924 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2F-204ENST00000409953 NCOA1Q15788 1441 aa12.94□□□□□ -0.34
UBE2F-204ENST00000409953 ZFYVE16Q7Z3T8 1539 aa12.92□□□□□ -0.34
UBE2F-204ENST00000409953 UGGT2Q9NYU1 1516 aa12.92□□□□□ -0.34
UBE2F-204ENST00000409953 DENND4BO75064 1496 aaPredicted RBP12.91□□□□□ -0.34
UBE2F-204ENST00000409953 RICTORQ6R327 1708 aa12.91□□□□□ -0.34
UBE2F-204ENST00000409953 RGS17Q9UGC6 210 aaPredicted RBP12.91□□□□□ -0.34
UBE2F-204ENST00000409953 EFCAB5A4FU69 1503 aa12.9□□□□□ -0.34
UBE2F-204ENST00000409953 ABCA8O94911 1581 aa12.9□□□□□ -0.35
UBE2F-204ENST00000409953 SETD1BQ9UPS6 1966 aaKnown RBP12.89□□□□□ -0.35
UBE2F-204ENST00000409953 FHOD3Q2V2M9 1422 aa12.88□□□□□ -0.35
UBE2F-204ENST00000409953 CARMIL1Q5VZK9 1371 aa12.88□□□□□ -0.35
UBE2F-204ENST00000409953 ZMYM4Q5VZL5 1548 aa12.88□□□□□ -0.35
UBE2F-204ENST00000409953 NPM3O75607 178 aaKnown RBP12.87□□□□□ -0.35
UBE2F-204ENST00000409953 TOM1O60784 492 aa12.86□□□□□ -0.35
UBE2F-204ENST00000409953 KIF27Q86VH2 1401 aa12.86□□□□□ -0.35
UBE2F-204ENST00000409953 ARID3CA6NKF2 412 aa12.83□□□□□ -0.36
UBE2F-204ENST00000409953 CAMSAP1Q5T5Y3 1602 aa12.83□□□□□ -0.36
UBE2F-204ENST00000409953 SRCAPQ6ZRS2 3230 aa12.83□□□□□ -0.36
UBE2F-204ENST00000409953 SETD1AO15047 1707 aaKnown RBP12.82□□□□□ -0.36
UBE2F-204ENST00000409953 MAGI2Q86UL8 1455 aa12.82□□□□□ -0.36
UBE2F-204ENST00000409953 NCKAP5LQ9HCH0 1330 aa12.81□□□□□ -0.36
UBE2F-204ENST00000409953 POTEAQ6S8J7 498 aa12.8□□□□□ -0.36
UBE2F-204ENST00000409953 HECW1Q76N89 1606 aa12.79□□□□□ -0.36
UBE2F-204ENST00000409953 TRAPPC8Q9Y2L5 1435 aa12.79□□□□□ -0.36
UBE2F-204ENST00000409953 C3P01024 1663 aa12.78□□□□□ -0.36
UBE2F-204ENST00000409953 C9orf84Q5VXU9 1444 aa12.78□□□□□ -0.36
UBE2F-204ENST00000409953 ATP10BO94823 1461 aa12.78□□□□□ -0.36
UBE2F-204ENST00000409953 ATP10AO60312 1499 aa12.77□□□□□ -0.37
UBE2F-204ENST00000409953 CFAP74Q9C0B2 1584 aa12.75□□□□□ -0.37
UBE2F-204ENST00000409953 ALKQ9UM73 1620 aa12.73□□□□□ -0.37
UBE2F-204ENST00000409953 PTPRKQ15262 1439 aa12.73□□□□□ -0.37
UBE2F-204ENST00000409953 UPF1Q92900 1129 aaKnown RBP eCLIP12.72□□□□□ -0.37
UBE2F-204ENST00000409953 RNF216Q9NWF9 866 aaPredicted RBP12.72□□□□□ -0.37
UBE2F-204ENST00000409953 CPS1P31327 1500 aa12.72□□□□□ -0.37
UBE2F-204ENST00000409953 GOLGA3Q08378 1498 aa12.72□□□□□ -0.37
UBE2F-204ENST00000409953 PKD2Q13563 968 aa12.71□□□□□ -0.37
UBE2F-204ENST00000409953 PLA2R1Q13018 1463 aa12.7□□□□□ -0.38
UBE2F-204ENST00000409953 TCOF1Q13428 1488 aaKnown RBP12.69□□□□□ -0.38
UBE2F-204ENST00000409953 ESF1Q9H501 851 aaKnown RBP12.66□□□□□ -0.38
UBE2F-204ENST00000409953 RAPGEF2Q9Y4G8 1499 aa12.65□□□□□ -0.38
UBE2F-204ENST00000409953 HOXD11P31277 338 aaPredicted RBP12.65□□□□□ -0.38
UBE2F-204ENST00000409953 SHANK2Q9UPX8 1470 aa12.65□□□□□ -0.38
UBE2F-204ENST00000409953 SCAPERQ9BY12 1400 aa12.64□□□□□ -0.39
UBE2F-204ENST00000409953 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.64□□□□□ -0.39
UBE2F-204ENST00000409953 HNRNPUL2Q1KMD3 747 aaKnown RBP12.64□□□□□ -0.39
UBE2F-204ENST00000409953 NPATQ14207 1427 aa12.63□□□□□ -0.39
UBE2F-204ENST00000409953 ZNF142P52746 1687 aaPredicted RBP12.61□□□□□ -0.39
UBE2F-204ENST00000409953 SUPT6HQ7KZ85 1726 aaKnown RBP12.61□□□□□ -0.39
UBE2F-204ENST00000409953 CNTLNQ9NXG0 1405 aa12.6□□□□□ -0.39
UBE2F-204ENST00000409953 MYO3AQ8NEV4 1616 aa12.59□□□□□ -0.39
UBE2F-204ENST00000409953 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.59□□□□□ -0.392e-6■■■□□ 16.6
UBE2F-204ENST00000409953 CTTNBP2Q8WZ74 1663 aa12.59□□□□□ -0.39
UBE2F-204ENST00000409953 FAM9AQ8IZU1 332 aaPredicted RBP12.59□□□□□ -0.39
UBE2F-204ENST00000409953 SLC4A1APQ9BWU0 796 aaKnown RBP12.59□□□□□ -0.39
UBE2F-204ENST00000409953 CEP170BQ9Y4F5 1589 aaPredicted RBP12.59□□□□□ -0.39
UBE2F-204ENST00000409953 AGLP35573 1532 aa12.58□□□□□ -0.4
UBE2F-204ENST00000409953 REREQ9P2R6 1566 aa12.56□□□□□ -0.4
UBE2F-204ENST00000409953 DIP2CQ9Y2E4 1556 aa12.56□□□□□ -0.4
UBE2F-204ENST00000409953 RNF17Q9BXT8 1623 aaKnown RBP12.55□□□□□ -0.4
UBE2F-204ENST00000409953 RAPGEF6Q8TEU7 1601 aa12.55□□□□□ -0.4
UBE2F-204ENST00000409953 VWDEQ8N2E2 1590 aa12.54□□□□□ -0.4
UBE2F-204ENST00000409953 NEURL4Q96JN8 1562 aa12.53□□□□□ -0.4
UBE2F-204ENST00000409953 TRIM52Q96A61 297 aa12.53□□□□□ -0.4
UBE2F-204ENST00000409953 MYT1LQ9UL68 1186 aa12.53□□□□□ -0.4
UBE2F-204ENST00000409953 ZNF518AQ6AHZ1 1483 aa12.53□□□□□ -0.4
UBE2F-204ENST00000409953 MROH2AA6NES4 1674 aa12.52□□□□□ -0.4
UBE2F-204ENST00000409953 P3H3Q8IVL6 736 aa12.52□□□□□ -0.41
UBE2F-204ENST00000409953 LRRC7Q96NW7 1537 aa12.52□□□□□ -0.41
UBE2F-204ENST00000409953 PLEKHD1A6NEE1 506 aa12.51□□□□□ -0.41
UBE2F-204ENST00000409953 ZMYM3Q14202 1370 aa12.51□□□□□ -0.41
UBE2F-204ENST00000409953 KDM5CP41229 1560 aa12.51□□□□□ -0.41
UBE2F-204ENST00000409953 ABCA6Q8N139 1617 aa12.51□□□□□ -0.41
UBE2F-204ENST00000409953 POLR1AO95602 1720 aaPredicted RBP12.51□□□□□ -0.41
UBE2F-204ENST00000409953 NUP153P49790 1475 aaKnown RBP12.5□□□□□ -0.41
UBE2F-204ENST00000409953 PLCH2O75038 1416 aa12.48□□□□□ -0.41
UBE2F-204ENST00000409953 IFFO2Q5TF58 517 aa12.48□□□□□ -0.41
UBE2F-204ENST00000409953 AFAP1Q8N556 730 aa12.47□□□□□ -0.41
UBE2F-204ENST00000409953 SYNMO15061 1565 aa12.46□□□□□ -0.42
UBE2F-204ENST00000409953 DNMT1P26358 1616 aaKnown RBP12.45□□□□□ -0.42
UBE2F-204ENST00000409953 A2ML1A8K2U0 1454 aa12.45□□□□□ -0.42
UBE2F-204ENST00000409953 SETBP1Q9Y6X0 1596 aa12.44□□□□□ -0.42
UBE2F-204ENST00000409953 EFCAB2Q5VUJ9 269 aa12.43□□□□□ -0.42
UBE2F-204ENST00000409953 STRCP1A6NGW2 1772 aa12.43□□□□□ -0.42
UBE2F-204ENST00000409953 RBM33Q96EV2 1170 aaKnown RBP12.42□□□□□ -0.42
UBE2F-204ENST00000409953 ZRANB1Q9UGI0 708 aa12.42□□□□□ -0.42
UBE2F-204ENST00000409953 MLH3Q9UHC1 1453 aa12.41□□□□□ -0.42
UBE2F-204ENST00000409953 FAM135BQ49AJ0 1406 aa12.41□□□□□ -0.42
UBE2F-204ENST00000409953 CLTCQ00610 1675 aaKnown RBP12.41□□□□□ -0.42
UBE2F-204ENST00000409953 NPHP4O75161 1426 aaPredicted RBP12.4□□□□□ -0.42
UBE2F-204ENST00000409953 ZNF772Q68DY9 489 aaPredicted RBP12.4□□□□□ -0.42
UBE2F-204ENST00000409953 CDK12Q9NYV4 1490 aaPredicted RBP12.39□□□□□ -0.43
UBE2F-204ENST00000409953 RXRBP28702 533 aa12.38□□□□□ -0.43
UBE2F-204ENST00000409953 ANKLE2Q86XL3 938 aa12.38□□□□□ -0.43
UBE2F-204ENST00000409953 CDK13Q14004 1512 aaKnown RBP12.37□□□□□ -0.43
UBE2F-204ENST00000409953 MYO5CQ9NQX4 1742 aa12.37□□□□□ -0.43
UBE2F-204ENST00000409953 SAMD9Q5K651 1589 aa12.36□□□□□ -0.43
UBE2F-204ENST00000409953 MED14O60244 1454 aa12.36□□□□□ -0.43
UBE2F-204ENST00000409953 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.35□□□□□ -0.43
UBE2F-204ENST00000409953 SUPT5HO00267 1087 aaKnown RBP12.35□□□□□ -0.43
UBE2F-204ENST00000409953 IQGAP1P46940 1657 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms