RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 RAD54L2Q9Y4B4 1467 aa9.71□□□□□ -0.85
SCN9A-202ENST00000409435 CFAP53Q96M91 514 aa9.71□□□□□ -0.86
SCN9A-202ENST00000409435 DIEXFQ68CQ4 756 aaKnown RBP9.7□□□□□ -0.86
SCN9A-202ENST00000409435 FGD5Q6ZNL6 1462 aa9.69□□□□□ -0.86
SCN9A-202ENST00000409435 HDGFL2Q7Z4V5 671 aaPredicted RBP9.69□□□□□ -0.86
SCN9A-202ENST00000409435 RAPGEF2Q9Y4G8 1499 aa9.69□□□□□ -0.86
SCN9A-202ENST00000409435 NUTM2FA1L443 756 aa9.69□□□□□ -0.86
SCN9A-202ENST00000409435 PSME1Q06323 249 aa9.68□□□□□ -0.86
SCN9A-202ENST00000409435 LAMC3Q9Y6N6 1575 aa9.68□□□□□ -0.86
SCN9A-202ENST00000409435 SNAPC4Q5SXM2 1469 aa9.68□□□□□ -0.86
SCN9A-202ENST00000409435 GOLGA2Q08379 1002 aa9.68□□□□□ -0.86
SCN9A-202ENST00000409435 ZNF330Q9Y3S2 320 aaPredicted RBP9.68□□□□□ -0.86
SCN9A-202ENST00000409435 TRIM44Q96DX7 344 aaPredicted RBP9.68□□□□□ -0.86
SCN9A-202ENST00000409435 WIZO95785 1651 aa9.67□□□□□ -0.86
SCN9A-202ENST00000409435 WDR43Q15061 677 aaKnown RBP eCLIP9.67□□□□□ -0.86
SCN9A-202ENST00000409435 ANP32CO43423 234 aa9.66□□□□□ -0.86
SCN9A-202ENST00000409435 CCDC18Q5T9S5 1454 aa9.66□□□□□ -0.86
SCN9A-202ENST00000409435 ANKRD30AQ9BXX3 1397 aa9.66□□□□□ -0.86
SCN9A-202ENST00000409435 TXNDC2Q86VQ3 553 aa9.66□□□□□ -0.86
SCN9A-202ENST00000409435 NCLP19338 710 aaKnown RBP9.65□□□□□ -0.87
SCN9A-202ENST00000409435 SYNJ1O43426 1573 aa9.65□□□□□ -0.87
SCN9A-202ENST00000409435 GTF2E1P29083 439 aaPredicted RBP9.64□□□□□ -0.87
SCN9A-202ENST00000409435 NUDCQ9Y266 331 aa9.64□□□□□ -0.87
SCN9A-202ENST00000409435 HMGXB3Q12766 1538 aa9.63□□□□□ -0.87
SCN9A-202ENST00000409435 CEP162Q5TB80 1403 aa9.63□□□□□ -0.87
SCN9A-202ENST00000409435 HMGB2P26583 209 aaKnown RBP9.62□□□□□ -0.87
SCN9A-202ENST00000409435 SYTL4Q96C24 671 aaPredicted RBP9.62□□□□□ -0.87
SCN9A-202ENST00000409435 SYNJ2O15056 1496 aa9.61□□□□□ -0.87
SCN9A-202ENST00000409435 PPP6R1Q9UPN7 881 aa9.61□□□□□ -0.87
SCN9A-202ENST00000409435 VGFO15240 615 aaPredicted RBP9.61□□□□□ -0.87
SCN9A-202ENST00000409435 KNSTRNQ9Y448 316 aa9.6□□□□□ -0.87
SCN9A-202ENST00000409435 RAPGEF3O95398 923 aa9.6□□□□□ -0.87
SCN9A-202ENST00000409435 CARD11Q9BXL7 1154 aa9.59□□□□□ -0.87
SCN9A-202ENST00000409435 MAPK8IP3Q9UPT6 1336 aa9.59□□□□□ -0.87
SCN9A-202ENST00000409435 WASHC2AQ641Q2 1341 aa9.59□□□□□ -0.87
SCN9A-202ENST00000409435 AMPHP49418 695 aa9.59□□□□□ -0.87
SCN9A-202ENST00000409435 RTF1Q92541 710 aaKnown RBP9.59□□□□□ -0.87
SCN9A-202ENST00000409435 TEX14Q8IWB6 1497 aa9.58□□□□□ -0.88
SCN9A-202ENST00000409435 PDE3BQ13370 1112 aa9.58□□□□□ -0.88
SCN9A-202ENST00000409435 DCAF11Q8TEB1 546 aa9.58□□□□□ -0.88
SCN9A-202ENST00000409435 PNNQ9H307 717 aaKnown RBP9.58□□□□□ -0.88
SCN9A-202ENST00000409435 PRDM2Q13029 1718 aa9.58□□□□□ -0.88
SCN9A-202ENST00000409435 CD109Q6YHK3 1445 aa9.58□□□□□ -0.88
SCN9A-202ENST00000409435 NGLY1Q96IV0 654 aa9.57□□□□□ -0.88
SCN9A-202ENST00000409435 NUP155O75694 1391 aa9.57□□□□□ -0.88
SCN9A-202ENST00000409435 FHOD3Q2V2M9 1422 aa9.57□□□□□ -0.88
SCN9A-202ENST00000409435 LTV1Q96GA3 475 aaPredicted RBP9.56□□□□□ -0.88
SCN9A-202ENST00000409435 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.56□□□□□ -0.88
SCN9A-202ENST00000409435 TOPBP1Q92547 1522 aa9.56□□□□□ -0.88
SCN9A-202ENST00000409435 ESCO1Q5FWF5 840 aa9.56□□□□□ -0.88
SCN9A-202ENST00000409435 CFTRP13569 1480 aa9.55□□□□□ -0.88
SCN9A-202ENST00000409435 AKNAQ7Z591 1439 aa9.54□□□□□ -0.88
SCN9A-202ENST00000409435 ARHGAP5Q13017 1502 aa9.54□□□□□ -0.88
SCN9A-202ENST00000409435 LAS1LQ9Y4W2 734 aaKnown RBP9.54□□□□□ -0.88
SCN9A-202ENST00000409435 ARHGAP35Q9NRY4 1499 aa9.54□□□□□ -0.88
SCN9A-202ENST00000409435 PKD2Q13563 968 aa9.54□□□□□ -0.88
SCN9A-202ENST00000409435 NBR1Q14596 966 aa9.54□□□□□ -0.88
SCN9A-202ENST00000409435 GPRASP1Q5JY77 1395 aa9.54□□□□□ -0.88
SCN9A-202ENST00000409435 U2SURPO15042 1029 aaKnown RBP9.54□□□□□ -0.88
SCN9A-202ENST00000409435 MYH16Q9H6N6 1097 aa9.53□□□□□ -0.88
SCN9A-202ENST00000409435 ERICH6BQ5W0A0 696 aa9.53□□□□□ -0.88
SCN9A-202ENST00000409435 TERF2IPQ9NYB0 399 aa9.53□□□□□ -0.88
SCN9A-202ENST00000409435 STRN4Q9NRL3 753 aa9.53□□□□□ -0.88
SCN9A-202ENST00000409435 LMTK3Q96Q04 1460 aa9.52□□□□□ -0.88
SCN9A-202ENST00000409435 USP35Q9P2H5 1018 aa9.52□□□□□ -0.89
SCN9A-202ENST00000409435 UACAQ9BZF9 1416 aa9.51□□□□□ -0.89
SCN9A-202ENST00000409435 TMF1P82094 1093 aa9.51□□□□□ -0.89
SCN9A-202ENST00000409435 MAGI1Q96QZ7 1491 aaPredicted RBP9.51□□□□□ -0.89
SCN9A-202ENST00000409435 ADAMTS2O95450 1211 aa9.51□□□□□ -0.89
SCN9A-202ENST00000409435 ISY1Q9ULR0 285 aaKnown RBP9.51□□□□□ -0.89
SCN9A-202ENST00000409435 HSP90AA1P07900 732 aaKnown RBP9.5□□□□□ -0.89
SCN9A-202ENST00000409435 AFAP1Q8N556 730 aa9.5□□□□□ -0.89
SCN9A-202ENST00000409435 PLB1Q6P1J6 1458 aa9.5□□□□□ -0.89
SCN9A-202ENST00000409435 ANP32EQ9BTT0 268 aa9.5□□□□□ -0.89
SCN9A-202ENST00000409435 EIF3AQ14152 1382 aaKnown RBP9.5□□□□□ -0.89
SCN9A-202ENST00000409435 DNMBPQ6XZF7 1577 aa9.49□□□□□ -0.89
SCN9A-202ENST00000409435 C1orf141Q5JVX7 400 aa9.49□□□□□ -0.89
SCN9A-202ENST00000409435 HSPA2P54652 639 aa9.49□□□□□ -0.89
SCN9A-202ENST00000409435 CWC22Q9HCG8 908 aaKnown RBP9.48□□□□□ -0.89
SCN9A-202ENST00000409435 C16orf71Q8IYS4 520 aaPredicted RBP9.48□□□□□ -0.89
SCN9A-202ENST00000409435 NAP1L5Q96NT1 182 aaPredicted RBP9.48□□□□□ -0.89
SCN9A-202ENST00000409435 NBPF8Q3BBV2 869 aa9.47□□□□□ -0.89
SCN9A-202ENST00000409435 NBPF14Q5TI25 921 aa9.47□□□□□ -0.89
SCN9A-202ENST00000409435 BICRAQ9NZM4 1560 aa9.47□□□□□ -0.89
SCN9A-202ENST00000409435 MORC1Q86VD1 984 aa9.47□□□□□ -0.89
SCN9A-202ENST00000409435 UPF2Q9HAU5 1272 aaKnown RBP9.47□□□□□ -0.89
SCN9A-202ENST00000409435 SCAPERQ9BY12 1400 aa9.47□□□□□ -0.89
SCN9A-202ENST00000409435 CEBPAP49715 358 aaPredicted RBP9.47□□□□□ -0.89
SCN9A-202ENST00000409435 CHMP4AQ9BY43 222 aa9.47□□□□□ -0.89
SCN9A-202ENST00000409435 POLA1P09884 1462 aaPredicted RBP9.46□□□□□ -0.89
SCN9A-202ENST00000409435 SALL2Q9Y467 1007 aaPredicted RBP9.46□□□□□ -0.9
SCN9A-202ENST00000409435 AMER1Q5JTC6 1135 aaPredicted RBP9.46□□□□□ -0.9
SCN9A-202ENST00000409435 TRAK1Q9UPV9 953 aa9.46□□□□□ -0.9
SCN9A-202ENST00000409435 DISP3Q9P2K9 1392 aa9.46□□□□□ -0.9
SCN9A-202ENST00000409435 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.46□□□□□ -0.93e-7■■■□□ 15
SCN9A-202ENST00000409435 NLRP2Q9NX02 1062 aa9.45□□□□□ -0.9
SCN9A-202ENST00000409435 OS9Q13438 667 aaPredicted RBP9.44□□□□□ -0.9
SCN9A-202ENST00000409435 RAPGEF4Q8WZA2 1011 aa9.44□□□□□ -0.9
SCN9A-202ENST00000409435 TAF7LQ5H9L4 462 aa9.44□□□□□ -0.9
SCN9A-202ENST00000409435 TTC5Q8N0Z6 440 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms