RNA–Protein interactions for RNA: ENST00000396096.6

NUP50-202, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 1,895 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-202ENST00000396096 KIF14Q15058 1648 aa24.09■■□□□ 1.45
NUP50-202ENST00000396096 GPATCH8Q9UKJ3 1502 aaKnown RBP24.08■■□□□ 1.44
NUP50-202ENST00000396096 KDM5BQ9UGL1 1544 aa24.07■■□□□ 1.44
NUP50-202ENST00000396096 CAMSAP2Q08AD1 1489 aa24.06■■□□□ 1.44
NUP50-202ENST00000396096 YTHDC1Q96MU7 727 aaKnown RBP24.04■■□□□ 1.44
NUP50-202ENST00000396096 ADGBQ8N7X0 1667 aa24.04■■□□□ 1.44
NUP50-202ENST00000396096 CHD1O14646 1710 aa24.04■■□□□ 1.44
NUP50-202ENST00000396096 CROCC2H7BZ55 1655 aa24.03■■□□□ 1.44
NUP50-202ENST00000396096 ATP10BO94823 1461 aa24.02■■□□□ 1.44
NUP50-202ENST00000396096 ZNF644Q9H582 1327 aaPredicted RBP24.02■■□□□ 1.44
NUP50-202ENST00000396096 ADGRL2O95490 1459 aa23.99■■□□□ 1.43
NUP50-202ENST00000396096 ABCC10Q5T3U5 1492 aa23.99■■□□□ 1.43
NUP50-202ENST00000396096 SHROOM2Q13796 1616 aa23.99■■□□□ 1.43
NUP50-202ENST00000396096 GTF3C3Q9Y5Q9 886 aa23.99■■□□□ 1.43
NUP50-202ENST00000396096 CDC42BPAQ5VT25 1732 aa23.99■■□□□ 1.43
NUP50-202ENST00000396096 CFDP1Q9UEE9 299 aaPredicted RBP23.98■■□□□ 1.43
NUP50-202ENST00000396096 TRIM52Q96A61 297 aa23.98■■□□□ 1.43
NUP50-202ENST00000396096 MPHOSPH9Q99550 1183 aa23.98■■□□□ 1.43
NUP50-202ENST00000396096 PLEKHD1A6NEE1 506 aa23.94■■□□□ 1.42
NUP50-202ENST00000396096 PTPRGP23470 1445 aa23.94■■□□□ 1.42
NUP50-202ENST00000396096 NCOA1Q15788 1441 aa23.93■■□□□ 1.42
NUP50-202ENST00000396096 SHANK2Q9UPX8 1470 aa23.9■■□□□ 1.42
NUP50-202ENST00000396096 ANKRD30BQ9BXX2 1392 aa23.89■■□□□ 1.41
NUP50-202ENST00000396096 RPRD2Q5VT52 1461 aaKnown RBP23.86■■□□□ 1.41
NUP50-202ENST00000396096 PZPP20742 1482 aa23.85■■□□□ 1.41
NUP50-202ENST00000396096 ANKRD30AQ9BXX3 1397 aa23.84■■□□□ 1.41
NUP50-202ENST00000396096 DDX10Q13206 875 aaKnown RBP23.84■■□□□ 1.41
NUP50-202ENST00000396096 ARHGEF5Q12774 1597 aa23.84■■□□□ 1.41
NUP50-202ENST00000396096 PREX2Q70Z35 1606 aa23.81■■□□□ 1.4
NUP50-202ENST00000396096 ZNF777Q9ULD5 760 aaPredicted RBP23.8■■□□□ 1.4
NUP50-202ENST00000396096 TEX14Q8IWB6 1497 aa23.79■■□□□ 1.4
NUP50-202ENST00000396096 CDC42BPBQ9Y5S2 1711 aa23.77■■□□□ 1.4
NUP50-202ENST00000396096 C9orf84Q5VXU9 1444 aa23.77■■□□□ 1.4
NUP50-202ENST00000396096 HIRIP3Q9BW71 556 aaPredicted RBP23.77■■□□□ 1.4
NUP50-202ENST00000396096 SLC4A1APQ9BWU0 796 aaKnown RBP23.77■■□□□ 1.4
NUP50-202ENST00000396096 ABCC2Q92887 1545 aa23.76■■□□□ 1.39
NUP50-202ENST00000396096 FOXD1Q16676 465 aa23.75■■□□□ 1.39
NUP50-202ENST00000396096 CLASP1Q7Z460 1538 aa23.75■■□□□ 1.39
NUP50-202ENST00000396096 ANKRD50Q9ULJ7 1429 aa23.75■■□□□ 1.39
NUP50-202ENST00000396096 L3MBTL2Q969R5 705 aa23.75■■□□□ 1.39
NUP50-202ENST00000396096 MBD5Q9P267 1494 aa23.74■■□□□ 1.39
NUP50-202ENST00000396096 ERCC6L2Q5T890 1561 aa23.73■■□□□ 1.39
NUP50-202ENST00000396096 SAMD9LQ8IVG5 1584 aa23.73■■□□□ 1.39
NUP50-202ENST00000396096 KDM5DQ9BY66 1539 aa23.73■■□□□ 1.39
NUP50-202ENST00000396096 KIAA1107Q9UPP5 1409 aa23.73■■□□□ 1.39
NUP50-202ENST00000396096 CCER2I3L3R5 266 aa23.69■■□□□ 1.38
NUP50-202ENST00000396096 CCDC141Q6ZP82 1450 aa23.68■■□□□ 1.38
NUP50-202ENST00000396096 TTC37Q6PGP7 1564 aa23.67■■□□□ 1.38
NUP50-202ENST00000396096 HSPA5P11021 654 aaKnown RBP23.66■■□□□ 1.38
NUP50-202ENST00000396096 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.66■■□□□ 1.38
NUP50-202ENST00000396096 MAST1Q9Y2H9 1570 aa23.66■■□□□ 1.38
NUP50-202ENST00000396096 TSPY4P0CV99 314 aa23.66■■□□□ 1.38
NUP50-202ENST00000396096 TSPY10P0CW01 314 aa23.66■■□□□ 1.38
NUP50-202ENST00000396096 RSPH4AQ5TD94 716 aa23.66■■□□□ 1.38
NUP50-202ENST00000396096 UHRF1BP1LA0JNW5 1464 aa23.65■■□□□ 1.38
NUP50-202ENST00000396096 EIF4G2P78344 907 aaKnown RBP eCLIP23.65■■□□□ 1.38
NUP50-202ENST00000396096 ANP32CO43423 234 aa23.64■■□□□ 1.38
NUP50-202ENST00000396096 MYO5CQ9NQX4 1742 aa23.64■■□□□ 1.38
NUP50-202ENST00000396096 KCNH8Q96L42 1107 aa23.64■■□□□ 1.37
NUP50-202ENST00000396096 KIF15Q9NS87 1388 aa23.62■■□□□ 1.37
NUP50-202ENST00000396096 HNRNPMP52272 730 aaKnown RBP eCLIP23.61■■□□□ 1.37
NUP50-202ENST00000396096 NBPF8Q3BBV2 869 aa23.6■■□□□ 1.37
NUP50-202ENST00000396096 ZCCHC11Q5TAX3 1644 aaKnown RBP23.59■■□□□ 1.37
NUP50-202ENST00000396096 PKD2Q13563 968 aa23.59■■□□□ 1.37
NUP50-202ENST00000396096 PLEKHH2Q8IVE3 1493 aa23.59■■□□□ 1.37
NUP50-202ENST00000396096 ARHGAP5Q13017 1502 aa23.59■■□□□ 1.37
NUP50-202ENST00000396096 POLR1AO95602 1720 aaPredicted RBP23.59■■□□□ 1.37
NUP50-202ENST00000396096 WASHC2AQ641Q2 1341 aa23.58■■□□□ 1.37
NUP50-202ENST00000396096 SYCP2Q9BX26 1530 aa23.58■■□□□ 1.36
NUP50-202ENST00000396096 NUP155O75694 1391 aa23.58■■□□□ 1.36
NUP50-202ENST00000396096 SPATA31E1Q6ZUB1 1445 aa23.56■■□□□ 1.36
NUP50-202ENST00000396096 PLXNC1O60486 1568 aa23.55■■□□□ 1.36
NUP50-202ENST00000396096 ARHGEF12Q9NZN5 1544 aa23.53■■□□□ 1.36
NUP50-202ENST00000396096 UNC13BO14795 1591 aa23.52■■□□□ 1.36
NUP50-202ENST00000396096 UHRF1BP1Q6BDS2 1440 aa23.5■■□□□ 1.35
NUP50-202ENST00000396096 CNTLNQ9NXG0 1405 aa23.5■■□□□ 1.35
NUP50-202ENST00000396096 CCDC7Q96M83 1385 aa23.5■■□□□ 1.35
NUP50-202ENST00000396096 PELP1Q8IZL8 1130 aaKnown RBP23.49■■□□□ 1.35
NUP50-202ENST00000396096 PLCH2O75038 1416 aa23.49■■□□□ 1.35
NUP50-202ENST00000396096 FAM135AQ9P2D6 1515 aa23.49■■□□□ 1.35
NUP50-202ENST00000396096 ARAP3Q8WWN8 1544 aa23.45■■□□□ 1.34
NUP50-202ENST00000396096 ABCC1P33527 1531 aa23.43■■□□□ 1.34
NUP50-202ENST00000396096 DUOX2Q9NRD8 1548 aa23.43■■□□□ 1.34
NUP50-202ENST00000396096 C11orf95C9JLR9 678 aaPredicted RBP23.43■■□□□ 1.34
NUP50-202ENST00000396096 RALGAPBQ86X10 1494 aa23.42■■□□□ 1.34
NUP50-202ENST00000396096 IQGAP3Q86VI3 1631 aa23.42■■□□□ 1.34
NUP50-202ENST00000396096 KDM5CP41229 1560 aa23.42■■□□□ 1.34
NUP50-202ENST00000396096 MAGI2Q86UL8 1455 aa23.4■■□□□ 1.34
NUP50-202ENST00000396096 ERBINQ96RT1 1412 aa23.38■■□□□ 1.33
NUP50-202ENST00000396096 EFCAB2Q5VUJ9 269 aa23.38■■□□□ 1.33
NUP50-202ENST00000396096 KIF7Q2M1P5 1343 aa23.37■■□□□ 1.33
NUP50-202ENST00000396096 USP47Q96K76 1375 aa23.36■■□□□ 1.33
NUP50-202ENST00000396096 BCORL1Q5H9F3 1711 aa23.34■■□□□ 1.33
NUP50-202ENST00000396096 SUPT16HQ9Y5B9 1047 aaKnown RBP23.34■■□□□ 1.33
NUP50-202ENST00000396096 ARID4BQ4LE39 1312 aaPredicted RBP23.33■■□□□ 1.32
NUP50-202ENST00000396096 WDR7Q9Y4E6 1490 aa23.31■■□□□ 1.32
NUP50-202ENST00000396096 ATP10AO60312 1499 aa23.31■■□□□ 1.32
NUP50-202ENST00000396096 PLA2R1Q13018 1463 aa23.3■■□□□ 1.32
NUP50-202ENST00000396096 RTEL1-TNFRSF6BF6WH68 1400 aa23.3■■□□□ 1.32
NUP50-202ENST00000396096 CCDC144AA2RUR9 1427 aa23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms