RNA–Protein interactions for RNA: ENST00000374198.4

PRPF4-201, Transcript of pre-mRNA processing factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PRPF4, Length 2,787 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4-201ENST00000374198 CCDC184Q52MB2 194 aa17.48■□□□□ 0.39
PRPF4-201ENST00000374198 EIF5BO60841 1220 aaKnown RBP17.47■□□□□ 0.39
PRPF4-201ENST00000374198 CARMIL2Q6F5E8 1435 aa17.46■□□□□ 0.39
PRPF4-201ENST00000374198 ARHGAP35Q9NRY4 1499 aa17.45■□□□□ 0.38
PRPF4-201ENST00000374198 FAM9BQ8IZU0 186 aa17.44■□□□□ 0.38
PRPF4-201ENST00000374198 BRPF3Q9ULD4 1205 aa17.44■□□□□ 0.38
PRPF4-201ENST00000374198 LAS1LQ9Y4W2 734 aaKnown RBP17.44■□□□□ 0.38
PRPF4-201ENST00000374198 TRHP20396 242 aaPredicted RBP17.43■□□□□ 0.38
PRPF4-201ENST00000374198 FAM50AQ14320 339 aaKnown RBP17.43■□□□□ 0.38
PRPF4-201ENST00000374198 CTTNBP2Q8WZ74 1663 aa17.43■□□□□ 0.38
PRPF4-201ENST00000374198 MAP3K1Q13233 1512 aa17.42■□□□□ 0.38
PRPF4-201ENST00000374198 PHLDB1Q86UU1 1377 aa17.41■□□□□ 0.38
PRPF4-201ENST00000374198 TIAM1Q13009 1591 aa17.41■□□□□ 0.38
PRPF4-201ENST00000374198 PPM1GO15355 546 aaPredicted RBP17.41■□□□□ 0.38
PRPF4-201ENST00000374198 PTPRGP23470 1445 aa17.4■□□□□ 0.38
PRPF4-201ENST00000374198 UGGT2Q9NYU1 1516 aa17.39■□□□□ 0.37
PRPF4-201ENST00000374198 RNF123Q5XPI4 1314 aa17.38■□□□□ 0.37
PRPF4-201ENST00000374198 MRS2Q9HD23 443 aa17.38■□□□□ 0.37
PRPF4-201ENST00000374198 AKNAQ7Z591 1439 aa17.38■□□□□ 0.37
PRPF4-201ENST00000374198 SMG6Q86US8 1419 aaKnown RBP17.38■□□□□ 0.37
PRPF4-201ENST00000374198 CNTLNQ9NXG0 1405 aa17.37■□□□□ 0.37
PRPF4-201ENST00000374198 NPM2Q86SE8 214 aaKnown RBP17.37■□□□□ 0.37
PRPF4-201ENST00000374198 DISP1Q96F81 1524 aa17.37■□□□□ 0.37
PRPF4-201ENST00000374198 NCOA2Q15596 1464 aa17.37■□□□□ 0.37
PRPF4-201ENST00000374198 LRRC9Q6ZRR7 1453 aa17.37■□□□□ 0.37
PRPF4-201ENST00000374198 PRKRIP1Q9H875 184 aaPredicted RBP17.37■□□□□ 0.37
PRPF4-201ENST00000374198 NPM1P06748 294 aaKnown RBP eCLIP17.36■□□□□ 0.37
PRPF4-201ENST00000374198 GSE1Q14687 1217 aa17.36■□□□□ 0.37
PRPF4-201ENST00000374198 PKNOX2Q96KN3 472 aa17.36■□□□□ 0.37
PRPF4-201ENST00000374198 HSPA5P11021 654 aaKnown RBP17.34■□□□□ 0.37
PRPF4-201ENST00000374198 KIAA0556O60303 1618 aa17.34■□□□□ 0.37
PRPF4-201ENST00000374198 RSPH6AQ9H0K4 717 aa17.34■□□□□ 0.37
PRPF4-201ENST00000374198 KDM5BQ9UGL1 1544 aa17.31■□□□□ 0.36
PRPF4-201ENST00000374198 NUDCQ9Y266 331 aa17.31■□□□□ 0.36
PRPF4-201ENST00000374198 P3H3Q8IVL6 736 aa17.3■□□□□ 0.36
PRPF4-201ENST00000374198 ADCY10Q96PN6 1610 aa17.3■□□□□ 0.36
PRPF4-201ENST00000374198 TCERG1O14776 1098 aaKnown RBP17.29■□□□□ 0.36
PRPF4-201ENST00000374198 PDE4AP27815 886 aa17.28■□□□□ 0.36
PRPF4-201ENST00000374198 UACAQ9BZF9 1416 aa17.26■□□□□ 0.35
PRPF4-201ENST00000374198 EIF4G2P78344 907 aaKnown RBP eCLIP17.26■□□□□ 0.35
PRPF4-201ENST00000374198 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.25■□□□□ 0.35
PRPF4-201ENST00000374198 BACH2Q9BYV9 841 aa17.25■□□□□ 0.35
PRPF4-201ENST00000374198 FRAT1Q92837 279 aaPredicted RBP17.24■□□□□ 0.35
PRPF4-201ENST00000374198 CCDC18Q5T9S5 1454 aa17.24■□□□□ 0.35
PRPF4-201ENST00000374198 FAM43AQ8N2R8 423 aa17.23■□□□□ 0.35
PRPF4-201ENST00000374198 CCDC7Q96M83 1385 aa17.22■□□□□ 0.35
PRPF4-201ENST00000374198 NFKBIBQ15653 356 aa17.22■□□□□ 0.35
PRPF4-201ENST00000374198 MS4A1P11836 297 aa17.21■□□□□ 0.35
PRPF4-201ENST00000374198 ABCC2Q92887 1545 aa17.21■□□□□ 0.35
PRPF4-201ENST00000374198 NCOA1Q15788 1441 aa17.2■□□□□ 0.34
PRPF4-201ENST00000374198 UHRF1BP1LA0JNW5 1464 aa17.2■□□□□ 0.34
PRPF4-201ENST00000374198 DDRGK1Q96HY6 314 aa17.2■□□□□ 0.34
PRPF4-201ENST00000374198 PLB1Q6P1J6 1458 aa17.19■□□□□ 0.34
PRPF4-201ENST00000374198 SAMD9Q5K651 1589 aa17.19■□□□□ 0.34
PRPF4-201ENST00000374198 CFAP43Q8NDM7 1665 aa17.17■□□□□ 0.34
PRPF4-201ENST00000374198 GLIPR1L2Q4G1C9 344 aa17.17■□□□□ 0.34
PRPF4-201ENST00000374198 FAM69CQ0P6D2 419 aa17.17■□□□□ 0.34
PRPF4-201ENST00000374198 HFM1A2PYH4 1435 aa17.16■□□□□ 0.34
PRPF4-201ENST00000374198 FHOD3Q2V2M9 1422 aa17.16■□□□□ 0.34
PRPF4-201ENST00000374198 ARID3CA6NKF2 412 aa17.14■□□□□ 0.33
PRPF4-201ENST00000374198 ABCA8O94911 1581 aa17.14■□□□□ 0.33
PRPF4-201ENST00000374198 EFCAB5A4FU69 1503 aa17.13■□□□□ 0.33
PRPF4-201ENST00000374198 ABCC10Q5T3U5 1492 aa17.13■□□□□ 0.33
PRPF4-201ENST00000374198 PTPN23Q9H3S7 1636 aa17.12■□□□□ 0.33
PRPF4-201ENST00000374198 ASXL2Q76L83 1435 aa17.12■□□□□ 0.33
PRPF4-201ENST00000374198 EXOC6Q8TAG9 804 aa17.11■□□□□ 0.33
PRPF4-201ENST00000374198 ZCCHC11Q5TAX3 1644 aaKnown RBP17.11■□□□□ 0.33
PRPF4-201ENST00000374198 KIF13AQ9H1H9 1805 aa17.1■□□□□ 0.33
PRPF4-201ENST00000374198 DCAF11Q8TEB1 546 aa17.1■□□□□ 0.33
PRPF4-201ENST00000374198 RRP1P56182 461 aaKnown RBP17.09■□□□□ 0.33
PRPF4-201ENST00000374198 DIP2BQ9P265 1576 aa17.09■□□□□ 0.33
PRPF4-201ENST00000374198 PTPRKQ15262 1439 aa17.09■□□□□ 0.33
PRPF4-201ENST00000374198 FGD6Q6ZV73 1430 aa17.08■□□□□ 0.32
PRPF4-201ENST00000374198 NAIPQ13075 1403 aa17.08■□□□□ 0.32
PRPF4-201ENST00000374198 PCF11O94913 1555 aaKnown RBP17.08■□□□□ 0.32
PRPF4-201ENST00000374198 KIF7Q2M1P5 1343 aa17.07■□□□□ 0.32
PRPF4-201ENST00000374198 ZMYND15Q9H091 742 aa17.07■□□□□ 0.32
PRPF4-201ENST00000374198 RAPGEF6Q8TEU7 1601 aa17.06■□□□□ 0.32
PRPF4-201ENST00000374198 FMN1Q68DA7 1419 aa17.05■□□□□ 0.32
PRPF4-201ENST00000374198 ATP1B4Q9UN42 357 aaPredicted RBP17.05■□□□□ 0.32
PRPF4-201ENST00000374198 SLC4A3P48751 1232 aa17.05■□□□□ 0.32
PRPF4-201ENST00000374198 VSIG10Q8N0Z9 540 aa17.05■□□□□ 0.32
PRPF4-201ENST00000374198 DAXXQ9UER7 740 aaPredicted RBP17.04■□□□□ 0.32
PRPF4-201ENST00000374198 SENP3-EIF4A1A0A087X0R7 540 aa17.02■□□□□ 0.32
PRPF4-201ENST00000374198 WDR7Q9Y4E6 1490 aa17.02■□□□□ 0.32
PRPF4-201ENST00000374198 L3MBTL2Q969R5 705 aa17.02■□□□□ 0.31
PRPF4-201ENST00000374198 ATP10BO94823 1461 aa17.02■□□□□ 0.31
PRPF4-201ENST00000374198 FRAT2O75474 233 aaPredicted RBP17.01■□□□□ 0.31
PRPF4-201ENST00000374198 DHX29Q7Z478 1369 aaKnown RBP17.01■□□□□ 0.31
PRPF4-201ENST00000374198 PNISRQ8TF01 805 aaKnown RBP17.01■□□□□ 0.31
PRPF4-201ENST00000374198 EPRSP07814 1512 aaKnown RBP17■□□□□ 0.31
PRPF4-201ENST00000374198 TSPOAP1O95153 1857 aa17■□□□□ 0.31
PRPF4-201ENST00000374198 NUP153P49790 1475 aaKnown RBP16.99■□□□□ 0.31
PRPF4-201ENST00000374198 RRAGDQ9NQL2 400 aaPredicted RBP16.99■□□□□ 0.31
PRPF4-201ENST00000374198 RCAN3Q9UKA8 241 aa16.99■□□□□ 0.31
PRPF4-201ENST00000374198 SPATA31E1Q6ZUB1 1445 aa16.99■□□□□ 0.31
PRPF4-201ENST00000374198 POLR1AO95602 1720 aaPredicted RBP16.98■□□□□ 0.31
PRPF4-201ENST00000374198 DENND4BO75064 1496 aaPredicted RBP16.98■□□□□ 0.31
PRPF4-201ENST00000374198 FYCO1Q9BQS8 1478 aa16.98■□□□□ 0.31
PRPF4-201ENST00000374198 GLI2P10070 1586 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms