RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 GRIN2BQ13224 1484 aa18.62■□□□□ 0.57
USP49-201ENST00000373006 AKNAQ7Z591 1439 aa18.62■□□□□ 0.57
USP49-201ENST00000373006 SUPT6HQ7KZ85 1726 aaKnown RBP18.61■□□□□ 0.57
USP49-201ENST00000373006 DNMBPQ6XZF7 1577 aa18.61■□□□□ 0.57
USP49-201ENST00000373006 MAGI3Q5TCQ9 1506 aa18.6■□□□□ 0.57
USP49-201ENST00000373006 CUL7Q14999 1698 aa18.59■□□□□ 0.57
USP49-201ENST00000373006 MYT1LQ9UL68 1186 aa18.58■□□□□ 0.57
USP49-201ENST00000373006 UGGT2Q9NYU1 1516 aa18.58■□□□□ 0.56
USP49-201ENST00000373006 EHBP1L1Q8N3D4 1523 aa18.57■□□□□ 0.56
USP49-201ENST00000373006 IL27Q8NEV9 243 aa18.56■□□□□ 0.56
USP49-201ENST00000373006 ZNF326Q5BKZ1 582 aaKnown RBP18.56■□□□□ 0.56
USP49-201ENST00000373006 SLC4A1APQ9BWU0 796 aaKnown RBP18.55■□□□□ 0.56
USP49-201ENST00000373006 SAMD9Q5K651 1589 aa18.54■□□□□ 0.56
USP49-201ENST00000373006 HECW1Q76N89 1606 aa18.53■□□□□ 0.56
USP49-201ENST00000373006 EIF5BO60841 1220 aaKnown RBP18.53■□□□□ 0.56
USP49-201ENST00000373006 ANKRD30BQ9BXX2 1392 aa18.53■□□□□ 0.56
USP49-201ENST00000373006 NUDCQ9Y266 331 aa18.52■□□□□ 0.56
USP49-201ENST00000373006 RTL5Q5HYW3 569 aaPredicted RBP18.51■□□□□ 0.55
USP49-201ENST00000373006 ARHGEF11O15085 1522 aa18.51■□□□□ 0.55
USP49-201ENST00000373006 ANP32AP39687 249 aaKnown RBP18.5■□□□□ 0.55
USP49-201ENST00000373006 TCOF1Q13428 1488 aaKnown RBP18.5■□□□□ 0.55
USP49-201ENST00000373006 ZNF644Q9H582 1327 aaPredicted RBP18.5■□□□□ 0.55
USP49-201ENST00000373006 SPATA31E1Q6ZUB1 1445 aa18.5■□□□□ 0.55
USP49-201ENST00000373006 SMG6Q86US8 1419 aaKnown RBP18.5■□□□□ 0.55
USP49-201ENST00000373006 GAPVD1Q14C86 1478 aa18.49■□□□□ 0.55
USP49-201ENST00000373006 GCC2Q8IWJ2 1684 aa18.49■□□□□ 0.55
USP49-201ENST00000373006 IPO9Q96P70 1041 aaKnown RBP18.48■□□□□ 0.55
USP49-201ENST00000373006 RPRD2Q5VT52 1461 aaKnown RBP18.48■□□□□ 0.55
USP49-201ENST00000373006 FBLN2P98095 1184 aa18.48■□□□□ 0.55
USP49-201ENST00000373006 URB2Q14146 1524 aaKnown RBP18.48■□□□□ 0.55
USP49-201ENST00000373006 ZBTB47Q9UFB7 747 aaPredicted RBP18.47■□□□□ 0.55
USP49-201ENST00000373006 CDK13Q14004 1512 aaKnown RBP18.46■□□□□ 0.55
USP49-201ENST00000373006 TEX14Q8IWB6 1497 aa18.45■□□□□ 0.54
USP49-201ENST00000373006 THOC2Q8NI27 1593 aaKnown RBP18.45■□□□□ 0.54
USP49-201ENST00000373006 DHX29Q7Z478 1369 aaKnown RBP18.45■□□□□ 0.54
USP49-201ENST00000373006 TMC1Q8TDI8 760 aa18.44■□□□□ 0.54
USP49-201ENST00000373006 NPM2Q86SE8 214 aaKnown RBP18.44■□□□□ 0.54
USP49-201ENST00000373006 PDS5BQ9NTI5 1447 aa18.43■□□□□ 0.54
USP49-201ENST00000373006 EPRSP07814 1512 aaKnown RBP18.43■□□□□ 0.54
USP49-201ENST00000373006 RNF123Q5XPI4 1314 aa18.43■□□□□ 0.54
USP49-201ENST00000373006 MIA2Q96PC5 1412 aa18.41■□□□□ 0.54
USP49-201ENST00000373006 PNISRQ8TF01 805 aaKnown RBP18.41■□□□□ 0.54
USP49-201ENST00000373006 ZNF777Q9ULD5 760 aaPredicted RBP18.4■□□□□ 0.54
USP49-201ENST00000373006 USP47Q96K76 1375 aa18.4■□□□□ 0.54
USP49-201ENST00000373006 DAPK1P53355 1430 aa18.39■□□□□ 0.53
USP49-201ENST00000373006 ABCC5O15440 1437 aa18.37■□□□□ 0.53
USP49-201ENST00000373006 ABCA5Q8WWZ7 1642 aa18.36■□□□□ 0.53
USP49-201ENST00000373006 EXOC6Q8TAG9 804 aa18.35■□□□□ 0.53
USP49-201ENST00000373006 LAMC3Q9Y6N6 1575 aa18.34■□□□□ 0.53
USP49-201ENST00000373006 ROCK1Q13464 1354 aa18.34■□□□□ 0.53
USP49-201ENST00000373006 PKD2Q13563 968 aa18.33■□□□□ 0.53
USP49-201ENST00000373006 LAS1LQ9Y4W2 734 aaKnown RBP18.33■□□□□ 0.52
USP49-201ENST00000373006 BCORL1Q5H9F3 1711 aa18.32■□□□□ 0.52
USP49-201ENST00000373006 KDM2AQ9Y2K7 1162 aa18.31■□□□□ 0.52
USP49-201ENST00000373006 CARD11Q9BXL7 1154 aa18.3■□□□□ 0.52
USP49-201ENST00000373006 RRP1P56182 461 aaKnown RBP18.3■□□□□ 0.52
USP49-201ENST00000373006 PZPP20742 1482 aa18.28■□□□□ 0.52
USP49-201ENST00000373006 POLR1AO95602 1720 aaPredicted RBP18.27■□□□□ 0.52
USP49-201ENST00000373006 ST20-MTHFSA0A0A6YYL1 179 aa18.27■□□□□ 0.52
USP49-201ENST00000373006 ERCC6Q03468 1493 aa18.27■□□□□ 0.52
USP49-201ENST00000373006 PDE4AP27815 886 aa18.27■□□□□ 0.51
USP49-201ENST00000373006 CFDP1Q9UEE9 299 aaPredicted RBP18.26■□□□□ 0.51
USP49-201ENST00000373006 RCAN3Q9UKA8 241 aa18.26■□□□□ 0.51
USP49-201ENST00000373006 WDR62O43379 1518 aa18.25■□□□□ 0.51
USP49-201ENST00000373006 SKAP1Q86WV1 359 aa18.25■□□□□ 0.51
USP49-201ENST00000373006 IQGAP2Q13576 1575 aa18.24■□□□□ 0.51
USP49-201ENST00000373006 NEFMP07197 916 aa18.24■□□□□ 0.51
USP49-201ENST00000373006 KIF21AQ7Z4S6 1674 aa18.24■□□□□ 0.51
USP49-201ENST00000373006 DNMT1P26358 1616 aaKnown RBP18.23■□□□□ 0.51
USP49-201ENST00000373006 TCERG1O14776 1098 aaKnown RBP18.23■□□□□ 0.51
USP49-201ENST00000373006 KIF15Q9NS87 1388 aa18.23■□□□□ 0.51
USP49-201ENST00000373006 KIAA1107Q9UPP5 1409 aa18.23■□□□□ 0.51
USP49-201ENST00000373006 ARID4BQ4LE39 1312 aaPredicted RBP18.22■□□□□ 0.51
USP49-201ENST00000373006 PLIN1O60240 522 aa18.22■□□□□ 0.51
USP49-201ENST00000373006 MBD5Q9P267 1494 aa18.22■□□□□ 0.51
USP49-201ENST00000373006 MYBBP1AQ9BQG0 1328 aaKnown RBP18.22■□□□□ 0.51
USP49-201ENST00000373006 CDCA7LQ96GN5 454 aa18.22■□□□□ 0.51
USP49-201ENST00000373006 LRPPRCP42704 1394 aaKnown RBP18.21■□□□□ 0.51
USP49-201ENST00000373006 DCAF11Q8TEB1 546 aa18.2■□□□□ 0.5
USP49-201ENST00000373006 BACH2Q9BYV9 841 aa18.2■□□□□ 0.5
USP49-201ENST00000373006 ROCK2O75116 1388 aaKnown RBP18.19■□□□□ 0.5
USP49-201ENST00000373006 KDM5CP41229 1560 aa18.19■□□□□ 0.5
USP49-201ENST00000373006 PRG4Q92954 1404 aaPredicted RBP18.18■□□□□ 0.5
USP49-201ENST00000373006 RALBP1Q15311 655 aa18.18■□□□□ 0.5
USP49-201ENST00000373006 BRD4O60885 1362 aaPredicted RBP18.18■□□□□ 0.5
USP49-201ENST00000373006 CHMP7Q8WUX9 453 aaPredicted RBP18.17■□□□□ 0.5
USP49-201ENST00000373006 NUP155O75694 1391 aa18.16■□□□□ 0.5
USP49-201ENST00000373006 NUP153P49790 1475 aaKnown RBP18.15■□□□□ 0.5
USP49-201ENST00000373006 ZNF608Q9ULD9 1512 aaPredicted RBP18.15■□□□□ 0.5
USP49-201ENST00000373006 CAMSAP2Q08AD1 1489 aa18.14■□□□□ 0.49
USP49-201ENST00000373006 TARBP1Q13395 1621 aaKnown RBP18.13■□□□□ 0.49
USP49-201ENST00000373006 BRPF3Q9ULD4 1205 aa18.13■□□□□ 0.49
USP49-201ENST00000373006 KIF14Q15058 1648 aa18.13■□□□□ 0.49
USP49-201ENST00000373006 NLRP13Q86W25 1043 aa18.12■□□□□ 0.49
USP49-201ENST00000373006 CC2D1BQ5T0F9 858 aaKnown RBP18.12■□□□□ 0.49
USP49-201ENST00000373006 ANKRD50Q9ULJ7 1429 aa18.11■□□□□ 0.49
USP49-201ENST00000373006 ANKRD30AQ9BXX3 1397 aa18.11■□□□□ 0.49
USP49-201ENST00000373006 MS4A1P11836 297 aa18.11■□□□□ 0.49
USP49-201ENST00000373006 CRBNQ96SW2 442 aa18.11■□□□□ 0.49
USP49-201ENST00000373006 SLC4A3P48751 1232 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms