RNA–Protein interactions for RNA: ENST00000372459.6

CTSA-203, Transcript of cathepsin A, humanhuman

TSL 1 (best) BASIC

Gene CTSA, Length 1,972 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-203ENST00000372459 CDC42BPAQ5VT25 1732 aa36.49■■■■□ 3.43
CTSA-203ENST00000372459 ROCK1Q13464 1354 aa36.49■■■■□ 3.43
CTSA-203ENST00000372459 ZNF316A6NFI3 1004 aaPredicted RBP36.49■■■■□ 3.43
CTSA-203ENST00000372459 UHRF1BP1LA0JNW5 1464 aa36.43■■■■□ 3.42
CTSA-203ENST00000372459 ZNF777Q9ULD5 760 aaPredicted RBP36.4■■■■□ 3.42
CTSA-203ENST00000372459 ACIN1Q9UKV3 1341 aaKnown RBP36.34■■■■□ 3.41
CTSA-203ENST00000372459 CROCC2H7BZ55 1655 aa36.33■■■■□ 3.41
CTSA-203ENST00000372459 KDM6BO15054 1643 aa36.33■■■■□ 3.41
CTSA-203ENST00000372459 ZCCHC11Q5TAX3 1644 aaKnown RBP36.31■■■■□ 3.4
CTSA-203ENST00000372459 ADGBQ8N7X0 1667 aa36.31■■■■□ 3.4
CTSA-203ENST00000372459 KDM5BQ9UGL1 1544 aa36.31■■■■□ 3.4
CTSA-203ENST00000372459 SIN3AQ96ST3 1273 aa36.3■■■■□ 3.4
CTSA-203ENST00000372459 TIMELESSQ9UNS1 1208 aa36.29■■■■□ 3.4
CTSA-203ENST00000372459 PREX2Q70Z35 1606 aa36.29■■■■□ 3.4
CTSA-203ENST00000372459 DIEXFQ68CQ4 756 aaKnown RBP36.27■■■■□ 3.4
CTSA-203ENST00000372459 OSCARQ8IYS5 282 aa36.27■■■■□ 3.4
CTSA-203ENST00000372459 ADGRL2O95490 1459 aa36.27■■■■□ 3.4
CTSA-203ENST00000372459 NEUROD1Q13562 356 aa36.26■■■■□ 3.4
CTSA-203ENST00000372459 CDC42BPBQ9Y5S2 1711 aa36.24■■■■□ 3.39
CTSA-203ENST00000372459 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP36.24■■■■□ 3.39
CTSA-203ENST00000372459 TRIM52Q96A61 297 aa36.24■■■■□ 3.39
CTSA-203ENST00000372459 NCOA1Q15788 1441 aa36.23■■■■□ 3.39
CTSA-203ENST00000372459 TTC37Q6PGP7 1564 aa36.22■■■■□ 3.39
CTSA-203ENST00000372459 SHANK2Q9UPX8 1470 aa36.22■■■■□ 3.39
CTSA-203ENST00000372459 ANKRD30AQ9BXX3 1397 aa36.19■■■■□ 3.38
CTSA-203ENST00000372459 ARHGEF5Q12774 1597 aa36.18■■■■□ 3.38
CTSA-203ENST00000372459 SAMD9LQ8IVG5 1584 aa36.16■■■■□ 3.38
CTSA-203ENST00000372459 MYO5CQ9NQX4 1742 aa36.14■■■■□ 3.38
CTSA-203ENST00000372459 ARHGAP5Q13017 1502 aa36.12■■■■□ 3.37
CTSA-203ENST00000372459 C9orf84Q5VXU9 1444 aa36.12■■■■□ 3.37
CTSA-203ENST00000372459 MBD5Q9P267 1494 aa36.12■■■■□ 3.37
CTSA-203ENST00000372459 KCNH8Q96L42 1107 aa36.11■■■■□ 3.37
CTSA-203ENST00000372459 TSPY4P0CV99 314 aa36.11■■■■□ 3.37
CTSA-203ENST00000372459 TSPY10P0CW01 314 aa36.11■■■■□ 3.37
CTSA-203ENST00000372459 MPHOSPH9Q99550 1183 aa36.11■■■■□ 3.37
CTSA-203ENST00000372459 DENND4BO75064 1496 aaPredicted RBP36.1■■■■□ 3.37
CTSA-203ENST00000372459 RSPH4AQ5TD94 716 aa36.09■■■■□ 3.37
CTSA-203ENST00000372459 HNRNPMP52272 730 aaKnown RBP eCLIP36.08■■■■□ 3.37
CTSA-203ENST00000372459 CCDC141Q6ZP82 1450 aa36.07■■■■□ 3.36
CTSA-203ENST00000372459 TONSLQ96HA7 1378 aa36.05■■■■□ 3.36
CTSA-203ENST00000372459 PLEKHH2Q8IVE3 1493 aa36.03■■■■□ 3.36
CTSA-203ENST00000372459 PLCH2O75038 1416 aa36.01■■■■□ 3.36
CTSA-203ENST00000372459 ANKRD50Q9ULJ7 1429 aa36■■■■□ 3.35
CTSA-203ENST00000372459 SYCP2Q9BX26 1530 aa36■■■■□ 3.35
CTSA-203ENST00000372459 PPP1R15AO75807 674 aaPredicted RBP35.99■■■■□ 3.35
CTSA-203ENST00000372459 KIAA1107Q9UPP5 1409 aa35.99■■■■□ 3.35
CTSA-203ENST00000372459 WDR7Q9Y4E6 1490 aa35.97■■■■□ 3.35
CTSA-203ENST00000372459 SLC4A1APQ9BWU0 796 aaKnown RBP35.93■■■■□ 3.34
CTSA-203ENST00000372459 MAST1Q9Y2H9 1570 aa35.92■■■■□ 3.34
CTSA-203ENST00000372459 KIF15Q9NS87 1388 aa35.92■■■■□ 3.34
CTSA-203ENST00000372459 EFCAB2Q5VUJ9 269 aa35.91■■■■□ 3.34
CTSA-203ENST00000372459 PZPP20742 1482 aa35.9■■■■□ 3.34
CTSA-203ENST00000372459 ARAP3Q8WWN8 1544 aa35.89■■■■□ 3.34
CTSA-203ENST00000372459 ANKRD30BQ9BXX2 1392 aa35.86■■■■□ 3.33
CTSA-203ENST00000372459 FOXD1Q16676 465 aa35.84■■■■□ 3.33
CTSA-203ENST00000372459 ASXL2Q76L83 1435 aa35.82■■■■□ 3.32
CTSA-203ENST00000372459 ABCC1P33527 1531 aa35.82■■■■□ 3.32
CTSA-203ENST00000372459 ARHGEF12Q9NZN5 1544 aa35.81■■■■□ 3.32
CTSA-203ENST00000372459 ABCA9Q8IUA7 1624 aa35.8■■■■□ 3.32
CTSA-203ENST00000372459 NPM1P06748 294 aaKnown RBP eCLIP35.79■■■■□ 3.32
CTSA-203ENST00000372459 KDM5DQ9BY66 1539 aa35.78■■■■□ 3.32
CTSA-203ENST00000372459 PLXNC1O60486 1568 aa35.77■■■■□ 3.32
CTSA-203ENST00000372459 RPRD2Q5VT52 1461 aaKnown RBP35.75■■■■□ 3.31
CTSA-203ENST00000372459 NUP155O75694 1391 aa35.74■■■■□ 3.31
CTSA-203ENST00000372459 PKD2Q13563 968 aa35.69■■■■□ 3.3
CTSA-203ENST00000372459 TRAPPC8Q9Y2L5 1435 aa35.66■■■■□ 3.3
CTSA-203ENST00000372459 FANCAO15360 1455 aa35.66■■■■□ 3.3
CTSA-203ENST00000372459 DUOX2Q9NRD8 1548 aa35.64■■■■□ 3.3
CTSA-203ENST00000372459 L3MBTL2Q969R5 705 aa35.62■■■■□ 3.29
CTSA-203ENST00000372459 MIER1Q8N108 512 aa35.6■■■■□ 3.29
CTSA-203ENST00000372459 UNC13BO14795 1591 aa35.59■■■■□ 3.29
CTSA-203ENST00000372459 RTEL1-TNFRSF6BF6WH68 1400 aa35.58■■■■□ 3.29
CTSA-203ENST00000372459 ERBINQ96RT1 1412 aa35.58■■■■□ 3.29
CTSA-203ENST00000372459 TEX14Q8IWB6 1497 aa35.58■■■■□ 3.29
CTSA-203ENST00000372459 FAM135AQ9P2D6 1515 aa35.56■■■■□ 3.28
CTSA-203ENST00000372459 SPAG9O60271 1321 aaKnown RBP35.55■■■■□ 3.28
CTSA-203ENST00000372459 SCAF1Q9H7N4 1312 aaKnown RBP35.55■■■■□ 3.28
CTSA-203ENST00000372459 ADGRL1O94910 1474 aa35.52■■■■□ 3.28
CTSA-203ENST00000372459 AFAP1Q8N556 730 aa35.51■■■■□ 3.28
CTSA-203ENST00000372459 ZFYVE16Q7Z3T8 1539 aa35.51■■■■□ 3.28
CTSA-203ENST00000372459 SCAPERQ9BY12 1400 aa35.47■■■■□ 3.27
CTSA-203ENST00000372459 IQGAP3Q86VI3 1631 aa35.45■■■■□ 3.27
CTSA-203ENST00000372459 MAGI2Q86UL8 1455 aa35.45■■■■□ 3.26
CTSA-203ENST00000372459 CD109Q6YHK3 1445 aa35.44■■■■□ 3.26
CTSA-203ENST00000372459 INO80Q9ULG1 1556 aaPredicted RBP35.43■■■■□ 3.26
CTSA-203ENST00000372459 CFAP74Q9C0B2 1584 aa35.43■■■■□ 3.26
CTSA-203ENST00000372459 ATP7AQ04656 1500 aa35.42■■■■□ 3.26
CTSA-203ENST00000372459 GRWD1Q9BQ67 446 aaKnown RBP eCLIP35.41■■■■□ 3.265e-7■□□□□ 10.4
CTSA-203ENST00000372459 HIRIP3Q9BW71 556 aaPredicted RBP35.41■■■■□ 3.26
CTSA-203ENST00000372459 RIMBP3CA6NJZ7 1639 aa35.38■■■■□ 3.25
CTSA-203ENST00000372459 RIMBP3BA6NNM3 1639 aa35.38■■■■□ 3.25
CTSA-203ENST00000372459 RIMBP3Q9UFD9 1639 aa35.38■■■■□ 3.25
CTSA-203ENST00000372459 NBPF8Q3BBV2 869 aa35.34■■■■□ 3.25
CTSA-203ENST00000372459 CYB5RLQ6IPT4 315 aa35.34■■■■□ 3.25
CTSA-203ENST00000372459 CENPBP07199 599 aaPredicted RBP35.32■■■■□ 3.24
CTSA-203ENST00000372459 ZNF518AQ6AHZ1 1483 aa35.32■■■■□ 3.24
CTSA-203ENST00000372459 EIF4G2P78344 907 aaKnown RBP eCLIP35.31■■■■□ 3.24
CTSA-203ENST00000372459 DDX10Q13206 875 aaKnown RBP35.29■■■■□ 3.24
CTSA-203ENST00000372459 MYT1LQ9UL68 1186 aa35.29■■■■□ 3.24
CTSA-203ENST00000372459 HSPA5P11021 654 aaKnown RBP35.27■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms