RNA–Protein interactions for RNA: ENST00000372232.7

ATG4A-203, Transcript of autophagy related 4A cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4A, Length 2,315 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-203ENST00000372232 PKNOX2Q96KN3 472 aa12.53□□□□□ -0.4
ATG4A-203ENST00000372232 URB2Q14146 1524 aaKnown RBP12.51□□□□□ -0.41
ATG4A-203ENST00000372232 WDR62O43379 1518 aa12.49□□□□□ -0.41
ATG4A-203ENST00000372232 LMOD2Q6P5Q4 547 aa12.46□□□□□ -0.41
ATG4A-203ENST00000372232 RRBP1Q9P2E9 1410 aaKnown RBP12.46□□□□□ -0.42
ATG4A-203ENST00000372232 SPINK5Q9NQ38 1064 aaPredicted RBP12.45□□□□□ -0.42
ATG4A-203ENST00000372232 CUL7Q14999 1698 aa12.44□□□□□ -0.42
ATG4A-203ENST00000372232 MAP3K1Q13233 1512 aa12.44□□□□□ -0.42
ATG4A-203ENST00000372232 PLEKHG5O94827 1062 aa12.44□□□□□ -0.42
ATG4A-203ENST00000372232 STAG3Q9UJ98 1225 aa12.43□□□□□ -0.42
ATG4A-203ENST00000372232 FHAD1B1AJZ9 1412 aa12.42□□□□□ -0.42
ATG4A-203ENST00000372232 WDR97A6NE52 1622 aa12.42□□□□□ -0.42
ATG4A-203ENST00000372232 TDRD9Q8NDG6 1382 aaKnown RBP12.42□□□□□ -0.42
ATG4A-203ENST00000372232 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.42□□□□□ -0.42
ATG4A-203ENST00000372232 CCNB3Q8WWL7 1395 aa12.41□□□□□ -0.42
ATG4A-203ENST00000372232 TIAM1Q13009 1591 aa12.4□□□□□ -0.42
ATG4A-203ENST00000372232 ABCA5Q8WWZ7 1642 aa12.4□□□□□ -0.43
ATG4A-203ENST00000372232 P3H3Q8IVL6 736 aa12.39□□□□□ -0.43
ATG4A-203ENST00000372232 GAPVD1Q14C86 1478 aa12.39□□□□□ -0.43
ATG4A-203ENST00000372232 EFCAB5A4FU69 1503 aa12.38□□□□□ -0.43
ATG4A-203ENST00000372232 NEUROD2Q15784 382 aa12.38□□□□□ -0.43
ATG4A-203ENST00000372232 LRRC9Q6ZRR7 1453 aa12.38□□□□□ -0.43
ATG4A-203ENST00000372232 FHOD3Q2V2M9 1422 aa12.37□□□□□ -0.43
ATG4A-203ENST00000372232 PCF11O94913 1555 aaKnown RBP12.35□□□□□ -0.43
ATG4A-203ENST00000372232 DHX57Q6P158 1386 aaKnown RBP12.35□□□□□ -0.43
ATG4A-203ENST00000372232 CTTNBP2Q8WZ74 1663 aa12.34□□□□□ -0.43
ATG4A-203ENST00000372232 AQRO60306 1485 aaKnown RBP eCLIP12.34□□□□□ -0.431e-6■■■■■ 33.8
ATG4A-203ENST00000372232 KCNV2Q8TDN2 545 aa12.34□□□□□ -0.43
ATG4A-203ENST00000372232 TARBP1Q13395 1621 aaKnown RBP12.34□□□□□ -0.43
ATG4A-203ENST00000372232 CASKIN1Q8WXD9 1431 aa12.34□□□□□ -0.43
ATG4A-203ENST00000372232 FYCO1Q9BQS8 1478 aa12.33□□□□□ -0.44
ATG4A-203ENST00000372232 NPM2Q86SE8 214 aaKnown RBP12.33□□□□□ -0.44
ATG4A-203ENST00000372232 PHLDB1Q86UU1 1377 aa12.32□□□□□ -0.44
ATG4A-203ENST00000372232 ATP1B4Q9UN42 357 aaPredicted RBP12.32□□□□□ -0.44
ATG4A-203ENST00000372232 FMN1Q68DA7 1419 aa12.31□□□□□ -0.44
ATG4A-203ENST00000372232 CFAP43Q8NDM7 1665 aa12.31□□□□□ -0.44
ATG4A-203ENST00000372232 STK25O00506 426 aa12.31□□□□□ -0.44
ATG4A-203ENST00000372232 IL27Q8NEV9 243 aa12.31□□□□□ -0.44
ATG4A-203ENST00000372232 ZNF692Q9BU19 519 aaPredicted RBP12.31□□□□□ -0.44
ATG4A-203ENST00000372232 IFT140Q96RY7 1462 aa12.3□□□□□ -0.44
ATG4A-203ENST00000372232 ITGAEP38570 1179 aa12.29□□□□□ -0.44
ATG4A-203ENST00000372232 SAMD9Q5K651 1589 aa12.28□□□□□ -0.44
ATG4A-203ENST00000372232 SLC24A3Q9HC58 644 aa12.28□□□□□ -0.44
ATG4A-203ENST00000372232 SNAPC4Q5SXM2 1469 aa12.27□□□□□ -0.44
ATG4A-203ENST00000372232 ZNF608Q9ULD9 1512 aaPredicted RBP12.26□□□□□ -0.45
ATG4A-203ENST00000372232 RIOK3O14730 519 aaKnown RBP12.24□□□□□ -0.45
ATG4A-203ENST00000372232 FAM50AQ14320 339 aaKnown RBP12.24□□□□□ -0.45
ATG4A-203ENST00000372232 ZC3H15Q8WU90 426 aaKnown RBP12.24□□□□□ -0.45
ATG4A-203ENST00000372232 RAB3GAP2Q9H2M9 1393 aa12.24□□□□□ -0.45
ATG4A-203ENST00000372232 ABCB7O75027 752 aa12.22□□□□□ -0.45
ATG4A-203ENST00000372232 NEFLP07196 543 aa12.22□□□□□ -0.45
ATG4A-203ENST00000372232 SETD5Q9C0A6 1442 aa12.22□□□□□ -0.45
ATG4A-203ENST00000372232 GRIN2BQ13224 1484 aa12.22□□□□□ -0.45
ATG4A-203ENST00000372232 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.22□□□□□ -0.45
ATG4A-203ENST00000372232 PBRM1Q86U86 1689 aa12.22□□□□□ -0.45
ATG4A-203ENST00000372232 ARID3AQ99856 593 aa12.22□□□□□ -0.45
ATG4A-203ENST00000372232 ADAMTS12P58397 1594 aa12.21□□□□□ -0.46
ATG4A-203ENST00000372232 CADPS2Q86UW7 1296 aa12.21□□□□□ -0.46
ATG4A-203ENST00000372232 EIF4G3O43432 1585 aaKnown RBP12.2□□□□□ -0.46
ATG4A-203ENST00000372232 CAPN15O75808 1086 aa12.2□□□□□ -0.46
ATG4A-203ENST00000372232 MTUS2Q5JR59 1369 aa12.2□□□□□ -0.46
ATG4A-203ENST00000372232 CDK11AQ9UQ88 783 aaPredicted RBP12.17□□□□□ -0.46
ATG4A-203ENST00000372232 FGD6Q6ZV73 1430 aa12.17□□□□□ -0.46
ATG4A-203ENST00000372232 IQGAP2Q13576 1575 aa12.17□□□□□ -0.46
ATG4A-203ENST00000372232 ZBTB47Q9UFB7 747 aaPredicted RBP12.17□□□□□ -0.46
ATG4A-203ENST00000372232 C11orf95C9JLR9 678 aaPredicted RBP12.16□□□□□ -0.46
ATG4A-203ENST00000372232 NOP58Q9Y2X3 529 aaKnown RBP12.16□□□□□ -0.46
ATG4A-203ENST00000372232 MAPKBP1O60336 1514 aa12.15□□□□□ -0.46
ATG4A-203ENST00000372232 OSCARQ8IYS5 282 aa12.15□□□□□ -0.46
ATG4A-203ENST00000372232 SSUH2Q9Y2M2 353 aa12.15□□□□□ -0.46
ATG4A-203ENST00000372232 LRRIQ1Q96JM4 1722 aa12.15□□□□□ -0.46
ATG4A-203ENST00000372232 BCL11BQ9C0K0 894 aaPredicted RBP12.14□□□□□ -0.47
ATG4A-203ENST00000372232 NCOA2Q15596 1464 aa12.14□□□□□ -0.47
ATG4A-203ENST00000372232 GLIPR1L2Q4G1C9 344 aa12.14□□□□□ -0.47
ATG4A-203ENST00000372232 STK24Q9Y6E0 443 aa12.14□□□□□ -0.47
ATG4A-203ENST00000372232 CCDC18Q5T9S5 1454 aa12.13□□□□□ -0.47
ATG4A-203ENST00000372232 EHBP1L1Q8N3D4 1523 aa12.13□□□□□ -0.47
ATG4A-203ENST00000372232 ZBTB12Q9Y330 459 aaPredicted RBP12.12□□□□□ -0.47
ATG4A-203ENST00000372232 UGGT2Q9NYU1 1516 aa12.12□□□□□ -0.47
ATG4A-203ENST00000372232 MYOM3Q5VTT5 1437 aa12.12□□□□□ -0.47
ATG4A-203ENST00000372232 RTL5Q5HYW3 569 aaPredicted RBP12.11□□□□□ -0.47
ATG4A-203ENST00000372232 KIAA0586Q9BVV6 1533 aa12.11□□□□□ -0.47
ATG4A-203ENST00000372232 C1orf115Q9H7X2 142 aa12.11□□□□□ -0.47
ATG4A-203ENST00000372232 GSE1Q14687 1217 aa12.1□□□□□ -0.47
ATG4A-203ENST00000372232 ZMYND15Q9H091 742 aa12.1□□□□□ -0.47
ATG4A-203ENST00000372232 MAGI3Q5TCQ9 1506 aa12.1□□□□□ -0.47
ATG4A-203ENST00000372232 HECW1Q76N89 1606 aa12.1□□□□□ -0.47
ATG4A-203ENST00000372232 SUPT6HQ7KZ85 1726 aaKnown RBP12.1□□□□□ -0.47
ATG4A-203ENST00000372232 ARHGEF11O15085 1522 aa12.09□□□□□ -0.47
ATG4A-203ENST00000372232 WDR70Q9NW82 654 aa12.09□□□□□ -0.47
ATG4A-203ENST00000372232 EPRSP07814 1512 aaKnown RBP12.09□□□□□ -0.47
ATG4A-203ENST00000372232 PTPRKQ15262 1439 aa12.09□□□□□ -0.47
ATG4A-203ENST00000372232 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.09□□□□□ -0.47
ATG4A-203ENST00000372232 ZFP91Q96JP5 570 aaPredicted RBP12.09□□□□□ -0.47
ATG4A-203ENST00000372232 GRIN2AQ12879 1464 aa12.08□□□□□ -0.48
ATG4A-203ENST00000372232 RSPH6AQ9H0K4 717 aa12.08□□□□□ -0.48
ATG4A-203ENST00000372232 WASHC2AQ641Q2 1341 aa12.08□□□□□ -0.48
ATG4A-203ENST00000372232 VGFO15240 615 aaPredicted RBP12.08□□□□□ -0.48
ATG4A-203ENST00000372232 HFM1A2PYH4 1435 aa12.08□□□□□ -0.48
ATG4A-203ENST00000372232 NUBP1P53384 320 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 200.8 ms