RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 GOLGA2Q08379 1002 aa19.1■□□□□ 0.65
COL5A1-201ENST00000371817 NUDCQ9Y266 331 aa19.1■□□□□ 0.65
COL5A1-201ENST00000371817 CCAR2Q8N163 923 aaKnown RBP19.09■□□□□ 0.65
COL5A1-201ENST00000371817 CCDC66A2RUB6 948 aa19.09■□□□□ 0.65
COL5A1-201ENST00000371817 CCER2I3L3R5 266 aa19.08■□□□□ 0.65
COL5A1-201ENST00000371817 CWC15Q9P013 229 aaKnown RBP19.08■□□□□ 0.65
COL5A1-201ENST00000371817 SKOR2Q2VWA4 1001 aaPredicted RBP19.08■□□□□ 0.64
COL5A1-201ENST00000371817 PRKCSHP14314 528 aaPredicted RBP19.07■□□□□ 0.64
COL5A1-201ENST00000371817 FAM43AQ8N2R8 423 aa19.05■□□□□ 0.64
COL5A1-201ENST00000371817 PRM3Q9NNZ6 103 aa19.05■□□□□ 0.64
COL5A1-201ENST00000371817 MTUS2Q5JR59 1369 aa19.04■□□□□ 0.64
COL5A1-201ENST00000371817 RDXP35241 583 aaKnown RBP19.03■□□□□ 0.64
COL5A1-201ENST00000371817 TSPY4P0CV99 314 aa19.03■□□□□ 0.64
COL5A1-201ENST00000371817 TSPY10P0CW01 314 aa19.03■□□□□ 0.64
COL5A1-201ENST00000371817 GOLGA6L19H0YKK7 550 aa19.03■□□□□ 0.64
COL5A1-201ENST00000371817 CEP89Q96ST8 783 aa19.03■□□□□ 0.64
COL5A1-201ENST00000371817 TAF7LQ5H9L4 462 aa19.02■□□□□ 0.64
COL5A1-201ENST00000371817 PABPN1Q86U42 306 aaKnown RBP eCLIP19.02■□□□□ 0.64
COL5A1-201ENST00000371817 C14orf37Q86TY3 774 aa19.02■□□□□ 0.63
COL5A1-201ENST00000371817 KIF16BQ96L93 1317 aa19.02■□□□□ 0.63
COL5A1-201ENST00000371817 TSR1Q2NL82 804 aaKnown RBP19.02■□□□□ 0.63
COL5A1-201ENST00000371817 ZNF592Q92610 1267 aa19■□□□□ 0.63
COL5A1-201ENST00000371817 RWDD1Q9H446 243 aaPredicted RBP19■□□□□ 0.63
COL5A1-201ENST00000371817 MFAP1P55081 439 aaKnown RBP18.99■□□□□ 0.63
COL5A1-201ENST00000371817 CARD11Q9BXL7 1154 aa18.99■□□□□ 0.63
COL5A1-201ENST00000371817 RCAN3Q9UKA8 241 aa18.99■□□□□ 0.63
COL5A1-201ENST00000371817 HSP90B1P14625 803 aaKnown RBP18.99■□□□□ 0.63
COL5A1-201ENST00000371817 PDE4CQ08493 712 aa18.98■□□□□ 0.63
COL5A1-201ENST00000371817 ST18O60284 1047 aa18.98■□□□□ 0.63
COL5A1-201ENST00000371817 CCDC191Q8NCU4 936 aa18.98■□□□□ 0.63
COL5A1-201ENST00000371817 HMMRO75330 724 aa18.97■□□□□ 0.63
COL5A1-201ENST00000371817 ABCC9O60706 1549 aa18.97■□□□□ 0.63
COL5A1-201ENST00000371817 PMFBP1Q8TBY8 1022 aa18.97■□□□□ 0.63
COL5A1-201ENST00000371817 IPO8O15397 1037 aaKnown RBP18.97■□□□□ 0.63
COL5A1-201ENST00000371817 ARGLU1Q9NWB6 273 aaPredicted RBP18.97■□□□□ 0.63
COL5A1-201ENST00000371817 DDX49Q9Y6V7 483 aaKnown RBP18.96■□□□□ 0.63
COL5A1-201ENST00000371817 CREBRFQ8IUR6 639 aa18.96■□□□□ 0.63
COL5A1-201ENST00000371817 CC2D1BQ5T0F9 858 aaKnown RBP18.96■□□□□ 0.63
COL5A1-201ENST00000371817 AK7Q96M32 723 aa18.95■□□□□ 0.62
COL5A1-201ENST00000371817 TPM1P09493 284 aa18.95■□□□□ 0.62
COL5A1-201ENST00000371817 ACBD3Q9H3P7 528 aa18.94■□□□□ 0.62
COL5A1-201ENST00000371817 H0YHG0 523 aa18.94■□□□□ 0.62
COL5A1-201ENST00000371817 FANCIQ9NVI1 1328 aa18.94■□□□□ 0.62
COL5A1-201ENST00000371817 HAP1P54257 671 aaPredicted RBP18.93■□□□□ 0.62
COL5A1-201ENST00000371817 TPM2P07951 284 aa18.93■□□□□ 0.62
COL5A1-201ENST00000371817 HSP90B2PQ58FF3 399 aa18.92■□□□□ 0.62
COL5A1-201ENST00000371817 RUFY1Q96T51 708 aa18.92■□□□□ 0.62
COL5A1-201ENST00000371817 CLIP1P30622 1438 aa18.91■□□□□ 0.62
COL5A1-201ENST00000371817 BECN2A8MW95 431 aa18.91■□□□□ 0.62
COL5A1-201ENST00000371817 RRP7BPQ9NSQ0 103 aa18.91■□□□□ 0.62
COL5A1-201ENST00000371817 ATP6V1DQ9Y5K8 247 aa18.9■□□□□ 0.62
COL5A1-201ENST00000371817 U2SURPO15042 1029 aaKnown RBP18.9■□□□□ 0.62
COL5A1-201ENST00000371817 CDR1P51861 262 aa18.89■□□□□ 0.61
COL5A1-201ENST00000371817 DIAPH3Q9NSV4 1193 aa18.89■□□□□ 0.61
COL5A1-201ENST00000371817 KIF3AQ9Y496 699 aa18.88■□□□□ 0.61
COL5A1-201ENST00000371817 HOMER1Q86YM7 354 aa18.88■□□□□ 0.61
COL5A1-201ENST00000371817 TPD52L1Q16890 204 aaPredicted RBP18.88■□□□□ 0.61
COL5A1-201ENST00000371817 PLPPR3Q6T4P5 718 aa18.88■□□□□ 0.61
COL5A1-201ENST00000371817 NPHP1O15259 732 aa18.88■□□□□ 0.61
COL5A1-201ENST00000371817 FOXD4L1Q9NU39 408 aa18.88■□□□□ 0.61
COL5A1-201ENST00000371817 ANO8Q9HCE9 1232 aaPredicted RBP18.87■□□□□ 0.61
COL5A1-201ENST00000371817 PES1O00541 588 aaKnown RBP18.87■□□□□ 0.61
COL5A1-201ENST00000371817 DCTN1Q14203 1278 aa18.87■□□□□ 0.61
COL5A1-201ENST00000371817 APBB1O00213 710 aa18.87■□□□□ 0.61
COL5A1-201ENST00000371817 STK11IPQ8N1F8 1099 aa18.87■□□□□ 0.61
COL5A1-201ENST00000371817 RASSF8Q8NHQ8 419 aa18.86■□□□□ 0.61
COL5A1-201ENST00000371817 GPATCH3Q96I76 525 aa18.86■□□□□ 0.61
COL5A1-201ENST00000371817 TAF3Q5VWG9 929 aa18.86■□□□□ 0.61
COL5A1-201ENST00000371817 RGL3Q3MIN7 710 aa18.86■□□□□ 0.61
COL5A1-201ENST00000371817 ITPRIPQ8IWB1 547 aa18.85■□□□□ 0.61
COL5A1-201ENST00000371817 ISY1Q9ULR0 285 aaKnown RBP18.85■□□□□ 0.61
COL5A1-201ENST00000371817 PLEKHG5O94827 1062 aa18.85■□□□□ 0.61
COL5A1-201ENST00000371817 SF3A1Q15459 793 aaKnown RBP18.85■□□□□ 0.61
COL5A1-201ENST00000371817 IPO7O95373 1038 aaKnown RBP18.84■□□□□ 0.61
COL5A1-201ENST00000371817 TRIM6-TRIM34B2RNG4 842 aa18.83■□□□□ 0.6
COL5A1-201ENST00000371817 HSP90AB3PQ58FF7 597 aa18.82■□□□□ 0.6
COL5A1-201ENST00000371817 NPM1P06748 294 aaKnown RBP eCLIP18.82■□□□□ 0.6
COL5A1-201ENST00000371817 RSF1Q96T23 1441 aaPredicted RBP18.82■□□□□ 0.6
COL5A1-201ENST00000371817 LEKR1Q6ZMV7 388 aa18.81■□□□□ 0.6
COL5A1-201ENST00000371817 PPP1R15AO75807 674 aaPredicted RBP18.8■□□□□ 0.6
COL5A1-201ENST00000371817 EEA1Q15075 1411 aa18.8■□□□□ 0.6
COL5A1-201ENST00000371817 RRP9O43818 475 aaKnown RBP18.8■□□□□ 0.6
COL5A1-201ENST00000371817 FOXD4L5Q5VV16 416 aaPredicted RBP18.8■□□□□ 0.6
COL5A1-201ENST00000371817 FOXD4L4Q8WXT5 416 aaPredicted RBP18.8■□□□□ 0.6
COL5A1-201ENST00000371817 FAM161AQ3B820 660 aa18.8■□□□□ 0.6
COL5A1-201ENST00000371817 R3HCC1Q9Y3T6 440 aaKnown RBP18.79■□□□□ 0.6
COL5A1-201ENST00000371817 MNS1Q8NEH6 495 aa18.79■□□□□ 0.6
COL5A1-201ENST00000371817 H3BQV1 296 aa18.78■□□□□ 0.6
COL5A1-201ENST00000371817 IFFO2Q5TF58 517 aa18.78■□□□□ 0.6
COL5A1-201ENST00000371817 KTN1Q86UP2 1357 aaKnown RBP18.78■□□□□ 0.6
COL5A1-201ENST00000371817 IFT57Q9NWB7 429 aa18.78■□□□□ 0.6
COL5A1-201ENST00000371817 NOL8Q76FK4 1167 aaKnown RBP18.77■□□□□ 0.6
COL5A1-201ENST00000371817 PDE4AP27815 886 aa18.76■□□□□ 0.59
COL5A1-201ENST00000371817 DEF6Q9H4E7 631 aa18.76■□□□□ 0.59
COL5A1-201ENST00000371817 MYO15BQ96JP2 1530 aa18.75■□□□□ 0.59
COL5A1-201ENST00000371817 TMF1P82094 1093 aa18.75■□□□□ 0.59
COL5A1-201ENST00000371817 PLCD4Q9BRC7 762 aa18.75■□□□□ 0.59
COL5A1-201ENST00000371817 CEP162Q5TB80 1403 aa18.75■□□□□ 0.59
COL5A1-201ENST00000371817 CCDC39Q9UFE4 941 aa18.75■□□□□ 0.59
COL5A1-201ENST00000371817 NASPP49321 788 aaPredicted RBP18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms