RNA–Protein interactions for RNA: ENST00000368841.6

SNX27-202, Transcript of sorting nexin family member 27, humanhuman

TSL 1 (best)

Gene SNX27, Length 7,070 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX27-202ENST00000368841 GGT6Q6P531 493 aa23.16■■□□□ 1.3
SNX27-202ENST00000368841 CHMP3Q9Y3E7 222 aa23.16■■□□□ 1.3
SNX27-202ENST00000368841 MSNP26038 577 aaKnown RBP23.15■■□□□ 1.3
SNX27-202ENST00000368841 NOL8Q76FK4 1167 aaKnown RBP23.14■■□□□ 1.3
SNX27-202ENST00000368841 PRM3Q9NNZ6 103 aa23.14■■□□□ 1.29
SNX27-202ENST00000368841 FOXD4L1Q9NU39 408 aa23.14■■□□□ 1.29
SNX27-202ENST00000368841 MCCP23508 829 aa23.13■■□□□ 1.29
SNX27-202ENST00000368841 HSP90B1P14625 803 aaKnown RBP23.12■■□□□ 1.29
SNX27-202ENST00000368841 ITPRIPQ8IWB1 547 aa23.11■■□□□ 1.29
SNX27-202ENST00000368841 PNNQ9H307 717 aaKnown RBP23.1■■□□□ 1.29
SNX27-202ENST00000368841 CHAF1AQ13111 956 aaPredicted RBP23.1■■□□□ 1.29
SNX27-202ENST00000368841 CREBRFQ8IUR6 639 aa23.08■■□□□ 1.29
SNX27-202ENST00000368841 CCNB3Q8WWL7 1395 aa23.08■■□□□ 1.29
SNX27-202ENST00000368841 SLKQ9H2G2 1235 aaPredicted RBP23.08■■□□□ 1.28
SNX27-202ENST00000368841 NRDCO43847 1150 aa23.07■■□□□ 1.28
SNX27-202ENST00000368841 DEKP35659 375 aaKnown RBP23.06■■□□□ 1.28
SNX27-202ENST00000368841 KANK1Q14678 1352 aa23.05■■□□□ 1.28
SNX27-202ENST00000368841 MS4A1P11836 297 aa23.04■■□□□ 1.28
SNX27-202ENST00000368841 NOC3LQ8WTT2 800 aaKnown RBP23.04■■□□□ 1.28
SNX27-202ENST00000368841 CHMP4BQ9H444 224 aaKnown RBP23.04■■□□□ 1.28
SNX27-202ENST00000368841 NUTM2FA1L443 756 aa23.03■■□□□ 1.28
SNX27-202ENST00000368841 HSPA5P11021 654 aaKnown RBP23.03■■□□□ 1.28
SNX27-202ENST00000368841 CCDC146Q8IYE0 955 aa23.03■■□□□ 1.28
SNX27-202ENST00000368841 FOXD4L5Q5VV16 416 aaPredicted RBP23.03■■□□□ 1.28
SNX27-202ENST00000368841 FOXD4L4Q8WXT5 416 aaPredicted RBP23.03■■□□□ 1.28
SNX27-202ENST00000368841 KIAA1211Q6ZU35 1233 aa23.03■■□□□ 1.28
SNX27-202ENST00000368841 U2AF1L5P0DN76 240 aaPredicted RBP23■■□□□ 1.27
SNX27-202ENST00000368841 MFAP1P55081 439 aaKnown RBP23■■□□□ 1.27
SNX27-202ENST00000368841 U2AF1Q01081 240 aaKnown RBP eCLIP23■■□□□ 1.271e-6■■■■□ 25.4
SNX27-202ENST00000368841 WRNQ14191 1432 aaPredicted RBP eCLIP22.99■■□□□ 1.27
SNX27-202ENST00000368841 TRIM6-TRIM34B2RNG4 842 aa22.99■■□□□ 1.27
SNX27-202ENST00000368841 LTV1Q96GA3 475 aaPredicted RBP22.99■■□□□ 1.27
SNX27-202ENST00000368841 BAZ1BQ9UIG0 1483 aaKnown RBP22.98■■□□□ 1.27
SNX27-202ENST00000368841 SLC4A10Q6U841 1118 aa22.98■■□□□ 1.27
SNX27-202ENST00000368841 GORABQ5T7V8 394 aa22.97■■□□□ 1.27
SNX27-202ENST00000368841 HDGFL2Q7Z4V5 671 aaPredicted RBP22.96■■□□□ 1.27
SNX27-202ENST00000368841 KIF27Q86VH2 1401 aa22.96■■□□□ 1.27
SNX27-202ENST00000368841 KIAA2012Q0VF49 1180 aa22.96■■□□□ 1.27
SNX27-202ENST00000368841 TAF7LQ5H9L4 462 aa22.95■■□□□ 1.26
SNX27-202ENST00000368841 CCDC180Q9P1Z9 1646 aa22.93■■□□□ 1.26
SNX27-202ENST00000368841 G3V3G9 751 aa22.92■■□□□ 1.26
SNX27-202ENST00000368841 DCAF8Q5TAQ9 597 aa22.92■■□□□ 1.26
SNX27-202ENST00000368841 PKD2Q13563 968 aa22.92■■□□□ 1.26
SNX27-202ENST00000368841 VPS53Q5VIR6 699 aa22.92■■□□□ 1.26
SNX27-202ENST00000368841 CLUAP1Q96AJ1 413 aa22.92■■□□□ 1.26
SNX27-202ENST00000368841 ROCK2O75116 1388 aaKnown RBP22.92■■□□□ 1.26
SNX27-202ENST00000368841 L1TD1Q5T7N2 865 aaKnown RBP22.89■■□□□ 1.25
SNX27-202ENST00000368841 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.89■■□□□ 1.257e-6■■□□□ 11.5
SNX27-202ENST00000368841 KTN1Q86UP2 1357 aaKnown RBP22.89■■□□□ 1.25
SNX27-202ENST00000368841 FBXO3Q9UK99 471 aa22.89■■□□□ 1.25
SNX27-202ENST00000368841 RBM19Q9Y4C8 960 aaKnown RBP22.89■■□□□ 1.25
SNX27-202ENST00000368841 RASSF8Q8NHQ8 419 aa22.88■■□□□ 1.25
SNX27-202ENST00000368841 TOMM22Q9NS69 142 aa22.88■■□□□ 1.25
SNX27-202ENST00000368841 HDGFP51858 240 aaKnown RBP22.87■■□□□ 1.25
SNX27-202ENST00000368841 WWC1Q8IX03 1113 aa22.87■■□□□ 1.25
SNX27-202ENST00000368841 TMX4Q9H1E5 349 aaPredicted RBP22.87■■□□□ 1.25
SNX27-202ENST00000368841 CEP164Q9UPV0 1460 aa22.85■■□□□ 1.25
SNX27-202ENST00000368841 FOXD4L6Q3SYB3 417 aaPredicted RBP22.85■■□□□ 1.25
SNX27-202ENST00000368841 FOXD4L3Q6VB84 417 aaPredicted RBP22.85■■□□□ 1.25
SNX27-202ENST00000368841 SMC4Q9NTJ3 1288 aa22.84■■□□□ 1.25
SNX27-202ENST00000368841 RCAN3Q9UKA8 241 aa22.84■■□□□ 1.25
SNX27-202ENST00000368841 A0A0U1RQG5 324 aaPredicted RBP22.83■■□□□ 1.25
SNX27-202ENST00000368841 RB1CC1Q8TDY2 1594 aa22.82■■□□□ 1.24
SNX27-202ENST00000368841 RRP7AQ9Y3A4 280 aaKnown RBP22.82■■□□□ 1.24
SNX27-202ENST00000368841 IPO8O15397 1037 aaKnown RBP22.82■■□□□ 1.24
SNX27-202ENST00000368841 EEA1Q15075 1411 aa22.81■■□□□ 1.24
SNX27-202ENST00000368841 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.81■■□□□ 1.24
SNX27-202ENST00000368841 FRAT2O75474 233 aaPredicted RBP22.8■■□□□ 1.24
SNX27-202ENST00000368841 GBP4Q96PP9 640 aa22.79■■□□□ 1.24
SNX27-202ENST00000368841 NGEFQ8N5V2 710 aa22.78■■□□□ 1.24
SNX27-202ENST00000368841 STK31Q9BXU1 1019 aa22.77■■□□□ 1.24
SNX27-202ENST00000368841 RAD21O60216 631 aa22.77■■□□□ 1.24
SNX27-202ENST00000368841 TNIKQ9UKE5 1360 aa22.77■■□□□ 1.24
SNX27-202ENST00000368841 RWDD1Q9H446 243 aaPredicted RBP22.76■■□□□ 1.23
SNX27-202ENST00000368841 PES1O00541 588 aaKnown RBP22.76■■□□□ 1.23
SNX27-202ENST00000368841 SPAG9O60271 1321 aaKnown RBP22.75■■□□□ 1.23
SNX27-202ENST00000368841 CUX2O14529 1486 aa22.74■■□□□ 1.23
SNX27-202ENST00000368841 GPATCH3Q96I76 525 aa22.74■■□□□ 1.23
SNX27-202ENST00000368841 NGDNQ8NEJ9 315 aaKnown RBP22.74■■□□□ 1.23
SNX27-202ENST00000368841 MSH5O43196 834 aa22.74■■□□□ 1.23
SNX27-202ENST00000368841 ELL2O00472 640 aaPredicted RBP22.72■■□□□ 1.23
SNX27-202ENST00000368841 KANK4Q5T7N3 995 aaPredicted RBP22.72■■□□□ 1.23
SNX27-202ENST00000368841 ARHGAP35Q9NRY4 1499 aa22.72■■□□□ 1.23
SNX27-202ENST00000368841 AMPHP49418 695 aa22.72■■□□□ 1.23
SNX27-202ENST00000368841 MARCH6O60337 910 aa22.71■■□□□ 1.23
SNX27-202ENST00000368841 HNRNPMP52272 730 aaKnown RBP eCLIP22.71■■□□□ 1.23
SNX27-202ENST00000368841 TPM4P67936 248 aa22.71■■□□□ 1.23
SNX27-202ENST00000368841 BCL2L13Q9BXK5 485 aa22.71■■□□□ 1.23
SNX27-202ENST00000368841 GTF2E1P29083 439 aaPredicted RBP22.7■■□□□ 1.23
SNX27-202ENST00000368841 SETD5Q9C0A6 1442 aa22.69■■□□□ 1.22
SNX27-202ENST00000368841 RILPL2Q969X0 211 aa22.69■■□□□ 1.22
SNX27-202ENST00000368841 SOGA1O94964 1423 aa22.69■■□□□ 1.22
SNX27-202ENST00000368841 NECTIN2Q92692 538 aa22.69■■□□□ 1.22
SNX27-202ENST00000368841 SLC4A3P48751 1232 aa22.69■■□□□ 1.22
SNX27-202ENST00000368841 CARMIL1Q5VZK9 1371 aa22.67■■□□□ 1.22
SNX27-202ENST00000368841 NUP155O75694 1391 aa22.67■■□□□ 1.22
SNX27-202ENST00000368841 KIF3BO15066 747 aa22.66■■□□□ 1.22
SNX27-202ENST00000368841 MPHOSPH9Q99550 1183 aa22.66■■□□□ 1.22
SNX27-202ENST00000368841 TRAK1Q9UPV9 953 aa22.65■■□□□ 1.22
SNX27-202ENST00000368841 GOLGA6L3A6NEY3 463 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms