RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 ANKRD30BQ9BXX2 1392 aa19.99■□□□□ 0.79
CD48-201ENST00000368045 TROQ12816 1431 aaPredicted RBP19.99■□□□□ 0.79
CD48-201ENST00000368045 RPRD2Q5VT52 1461 aaKnown RBP19.98■□□□□ 0.79
CD48-201ENST00000368045 SYNJ2O15056 1496 aa19.95■□□□□ 0.78
CD48-201ENST00000368045 NEFLP07196 543 aa19.95■□□□□ 0.78
CD48-201ENST00000368045 WASHC2AQ641Q2 1341 aa19.94■□□□□ 0.78
CD48-201ENST00000368045 L3MBTL2Q969R5 705 aa19.94■□□□□ 0.78
CD48-201ENST00000368045 ITSN2Q9NZM3 1697 aa19.94■□□□□ 0.78
CD48-201ENST00000368045 ARID3CA6NKF2 412 aa19.93■□□□□ 0.78
CD48-201ENST00000368045 ADCY10Q96PN6 1610 aa19.93■□□□□ 0.78
CD48-201ENST00000368045 TEX14Q8IWB6 1497 aa19.92■□□□□ 0.78
CD48-201ENST00000368045 ADGRL2O95490 1459 aa19.91■□□□□ 0.78
CD48-201ENST00000368045 FKBP8Q14318 412 aa19.91■□□□□ 0.78
CD48-201ENST00000368045 CARMIL2Q6F5E8 1435 aa19.91■□□□□ 0.78
CD48-201ENST00000368045 CNTLNQ9NXG0 1405 aa19.91■□□□□ 0.78
CD48-201ENST00000368045 CAMSAP2Q08AD1 1489 aa19.91■□□□□ 0.78
CD48-201ENST00000368045 NCOA1Q15788 1441 aa19.9■□□□□ 0.78
CD48-201ENST00000368045 CEP170Q5SW79 1584 aa19.9■□□□□ 0.78
CD48-201ENST00000368045 TSHZ2Q9NRE2 1034 aa19.9■□□□□ 0.78
CD48-201ENST00000368045 ZNF644Q9H582 1327 aaPredicted RBP19.89■□□□□ 0.77
CD48-201ENST00000368045 NUP160Q12769 1436 aa19.89■□□□□ 0.77
CD48-201ENST00000368045 PRG4Q92954 1404 aaPredicted RBP19.89■□□□□ 0.77
CD48-201ENST00000368045 GPATCH8Q9UKJ3 1502 aaKnown RBP19.88■□□□□ 0.77
CD48-201ENST00000368045 CHMP7Q8WUX9 453 aaPredicted RBP19.88■□□□□ 0.77
CD48-201ENST00000368045 ERCC6Q03468 1493 aa19.88■□□□□ 0.77
CD48-201ENST00000368045 ADGBQ8N7X0 1667 aa19.88■□□□□ 0.77
CD48-201ENST00000368045 SLC4A1APQ9BWU0 796 aaKnown RBP19.87■□□□□ 0.77
CD48-201ENST00000368045 CFDP1Q9UEE9 299 aaPredicted RBP19.87■□□□□ 0.77
CD48-201ENST00000368045 CCDC7Q96M83 1385 aa19.86■□□□□ 0.77
CD48-201ENST00000368045 PZPP20742 1482 aa19.86■□□□□ 0.77
CD48-201ENST00000368045 PLB1Q6P1J6 1458 aa19.84■□□□□ 0.77
CD48-201ENST00000368045 FOXD1Q16676 465 aa19.83■□□□□ 0.77
CD48-201ENST00000368045 SPATA31E1Q6ZUB1 1445 aa19.83■□□□□ 0.76
CD48-201ENST00000368045 CROCC2H7BZ55 1655 aa19.82■□□□□ 0.76
CD48-201ENST00000368045 ANKRD30AQ9BXX3 1397 aa19.82■□□□□ 0.76
CD48-201ENST00000368045 KIAA1107Q9UPP5 1409 aa19.81■□□□□ 0.76
CD48-201ENST00000368045 NBPF8Q3BBV2 869 aa19.8■□□□□ 0.76
CD48-201ENST00000368045 SHANK2Q9UPX8 1470 aa19.8■□□□□ 0.76
CD48-201ENST00000368045 JPH4Q96JJ6 628 aa19.8■□□□□ 0.76
CD48-201ENST00000368045 KIF14Q15058 1648 aa19.79■□□□□ 0.76
CD48-201ENST00000368045 ABCA8O94911 1581 aa19.78■□□□□ 0.76
CD48-201ENST00000368045 MBD5Q9P267 1494 aa19.78■□□□□ 0.76
CD48-201ENST00000368045 HNRNPUQ00839 825 aaKnown RBP eCLIP19.78■□□□□ 0.76
CD48-201ENST00000368045 BCANQ96GW7 911 aa19.78■□□□□ 0.76
CD48-201ENST00000368045 POLR1AO95602 1720 aaPredicted RBP19.76■□□□□ 0.75
CD48-201ENST00000368045 PRKRIP1Q9H875 184 aaPredicted RBP19.75■□□□□ 0.75
CD48-201ENST00000368045 ABCC10Q5T3U5 1492 aa19.75■□□□□ 0.75
CD48-201ENST00000368045 PLEKHD1A6NEE1 506 aa19.74■□□□□ 0.75
CD48-201ENST00000368045 C11orf95C9JLR9 678 aaPredicted RBP19.74■□□□□ 0.75
CD48-201ENST00000368045 ANKRD50Q9ULJ7 1429 aa19.73■□□□□ 0.75
CD48-201ENST00000368045 KIF7Q2M1P5 1343 aa19.72■□□□□ 0.75
CD48-201ENST00000368045 ERICH6BQ5W0A0 696 aa19.71■□□□□ 0.75
CD48-201ENST00000368045 KDM5DQ9BY66 1539 aa19.71■□□□□ 0.75
CD48-201ENST00000368045 ARID4BQ4LE39 1312 aaPredicted RBP19.71■□□□□ 0.75
CD48-201ENST00000368045 ATP10BO94823 1461 aa19.7■□□□□ 0.74
CD48-201ENST00000368045 FBLN2P98095 1184 aa19.7■□□□□ 0.74
CD48-201ENST00000368045 ZNF777Q9ULD5 760 aaPredicted RBP19.7■□□□□ 0.74
CD48-201ENST00000368045 C9orf84Q5VXU9 1444 aa19.69■□□□□ 0.74
CD48-201ENST00000368045 UHRF1BP1Q6BDS2 1440 aa19.69■□□□□ 0.74
CD48-201ENST00000368045 PKD2Q13563 968 aa19.68■□□□□ 0.74
CD48-201ENST00000368045 CDC42BPAQ5VT25 1732 aa19.68■□□□□ 0.74
CD48-201ENST00000368045 ARHGEF12Q9NZN5 1544 aa19.67■□□□□ 0.74
CD48-201ENST00000368045 ARHGEF5Q12774 1597 aa19.67■□□□□ 0.74
CD48-201ENST00000368045 MRS2Q9HD23 443 aa19.64■□□□□ 0.73
CD48-201ENST00000368045 ZBED9Q6R2W3 1325 aa19.64■□□□□ 0.73
CD48-201ENST00000368045 USP47Q96K76 1375 aa19.64■□□□□ 0.73
CD48-201ENST00000368045 RALGAPBQ86X10 1494 aa19.63■□□□□ 0.73
CD48-201ENST00000368045 PTPRGP23470 1445 aa19.63■□□□□ 0.73
CD48-201ENST00000368045 TSPY4P0CV99 314 aa19.62■□□□□ 0.73
CD48-201ENST00000368045 TSPY10P0CW01 314 aa19.62■□□□□ 0.73
CD48-201ENST00000368045 NUP155O75694 1391 aa19.62■□□□□ 0.73
CD48-201ENST00000368045 CCDC184Q52MB2 194 aa19.61■□□□□ 0.73
CD48-201ENST00000368045 ROCK2O75116 1388 aaKnown RBP19.61■□□□□ 0.73
CD48-201ENST00000368045 KDM5CP41229 1560 aa19.6■□□□□ 0.73
CD48-201ENST00000368045 DHX29Q7Z478 1369 aaKnown RBP19.6■□□□□ 0.73
CD48-201ENST00000368045 RSPH4AQ5TD94 716 aa19.59■□□□□ 0.73
CD48-201ENST00000368045 KIF15Q9NS87 1388 aa19.58■□□□□ 0.73
CD48-201ENST00000368045 CCDC141Q6ZP82 1450 aa19.56■□□□□ 0.72
CD48-201ENST00000368045 FAM9BQ8IZU0 186 aa19.55■□□□□ 0.72
CD48-201ENST00000368045 BCORL1Q5H9F3 1711 aa19.54■□□□□ 0.72
CD48-201ENST00000368045 PREX2Q70Z35 1606 aa19.53■□□□□ 0.72
CD48-201ENST00000368045 RBM19Q9Y4C8 960 aaKnown RBP19.53■□□□□ 0.72
CD48-201ENST00000368045 PPP4R2Q9NY27 417 aa19.52■□□□□ 0.71
CD48-201ENST00000368045 SAMD9LQ8IVG5 1584 aa19.5■□□□□ 0.71
CD48-201ENST00000368045 MAST1Q9Y2H9 1570 aa19.5■□□□□ 0.71
CD48-201ENST00000368045 ZNF326Q5BKZ1 582 aaKnown RBP19.5■□□□□ 0.71
CD48-201ENST00000368045 ANP32EQ9BTT0 268 aa19.5■□□□□ 0.71
CD48-201ENST00000368045 KTN1Q86UP2 1357 aaKnown RBP19.5■□□□□ 0.71
CD48-201ENST00000368045 HNRNPMP52272 730 aaKnown RBP eCLIP19.49■□□□□ 0.71
CD48-201ENST00000368045 CARD11Q9BXL7 1154 aa19.49■□□□□ 0.71
CD48-201ENST00000368045 FAM135AQ9P2D6 1515 aa19.48■□□□□ 0.71
CD48-201ENST00000368045 SMG6Q86US8 1419 aaKnown RBP19.47■□□□□ 0.71
CD48-201ENST00000368045 PLEKHH2Q8IVE3 1493 aa19.46■□□□□ 0.71
CD48-201ENST00000368045 CDC42BPBQ9Y5S2 1711 aa19.45■□□□□ 0.7
CD48-201ENST00000368045 SHROOM2Q13796 1616 aa19.44■□□□□ 0.7
CD48-201ENST00000368045 UNC13BO14795 1591 aa19.44■□□□□ 0.7
CD48-201ENST00000368045 IRX6P78412 446 aaPredicted RBP19.42■□□□□ 0.7
CD48-201ENST00000368045 PLXNC1O60486 1568 aa19.41■□□□□ 0.7
CD48-201ENST00000368045 DCAF11Q8TEB1 546 aa19.41■□□□□ 0.7
CD48-201ENST00000368045 CCDC144AA2RUR9 1427 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms