RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 ISY1Q9ULR0 285 aaKnown RBP11.18□□□□□ -0.62
SYNE1-206ENST00000367253 EVA1CP58658 441 aa11.18□□□□□ -0.62
SYNE1-206ENST00000367253 LAS1LQ9Y4W2 734 aaKnown RBP11.18□□□□□ -0.62
SYNE1-206ENST00000367253 DMRT2Q9Y5R5 561 aa11.18□□□□□ -0.62
SYNE1-206ENST00000367253 CC2D2AQ9P2K1 1620 aa11.18□□□□□ -0.62
SYNE1-206ENST00000367253 DHX37Q8IY37 1157 aaKnown RBP11.17□□□□□ -0.62
SYNE1-206ENST00000367253 PPP1R1BQ9UD71 204 aaPredicted RBP11.17□□□□□ -0.62
SYNE1-206ENST00000367253 WDHD1O75717 1129 aaPredicted RBP11.17□□□□□ -0.62
SYNE1-206ENST00000367253 CFAP44Q96MT7 982 aa11.17□□□□□ -0.62
SYNE1-206ENST00000367253 PNNQ9H307 717 aaKnown RBP11.16□□□□□ -0.62
SYNE1-206ENST00000367253 NUDCQ9Y266 331 aa11.16□□□□□ -0.62
SYNE1-206ENST00000367253 TNIKQ9UKE5 1360 aa11.16□□□□□ -0.62
SYNE1-206ENST00000367253 WDR43Q15061 677 aaKnown RBP eCLIP11.15□□□□□ -0.62
SYNE1-206ENST00000367253 CFTRP13569 1480 aa11.15□□□□□ -0.62
SYNE1-206ENST00000367253 EFCAB2Q5VUJ9 269 aa11.15□□□□□ -0.62
SYNE1-206ENST00000367253 GGT6Q6P531 493 aa11.14□□□□□ -0.63
SYNE1-206ENST00000367253 PAK3O75914 559 aaPredicted RBP11.14□□□□□ -0.63
SYNE1-206ENST00000367253 BCL11BQ9C0K0 894 aaPredicted RBP11.14□□□□□ -0.63
SYNE1-206ENST00000367253 FANCD2Q9BXW9 1451 aa11.13□□□□□ -0.63
SYNE1-206ENST00000367253 SOGA1O94964 1423 aa11.13□□□□□ -0.63
SYNE1-206ENST00000367253 CUX2O14529 1486 aa11.13□□□□□ -0.63
SYNE1-206ENST00000367253 DDRGK1Q96HY6 314 aa11.12□□□□□ -0.63
SYNE1-206ENST00000367253 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.12□□□□□ -0.63
SYNE1-206ENST00000367253 CLIP1P30622 1438 aa11.11□□□□□ -0.63
SYNE1-206ENST00000367253 SALL2Q9Y467 1007 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-206ENST00000367253 RSPH6AQ9H0K4 717 aa11.1□□□□□ -0.63
SYNE1-206ENST00000367253 PTMAP06454 111 aaKnown RBP11.1□□□□□ -0.63
SYNE1-206ENST00000367253 ATF3P18847 181 aa11.1□□□□□ -0.63
SYNE1-206ENST00000367253 GOLGA6L22H0YM25 854 aa11.1□□□□□ -0.63
SYNE1-206ENST00000367253 BRD2P25440 801 aaKnown RBP11.1□□□□□ -0.63
SYNE1-206ENST00000367253 HNRNPUQ00839 825 aaKnown RBP eCLIP11.1□□□□□ -0.63
SYNE1-206ENST00000367253 BECN1Q14457 450 aa11.09□□□□□ -0.63
SYNE1-206ENST00000367253 PPM1GO15355 546 aaPredicted RBP11.09□□□□□ -0.63
SYNE1-206ENST00000367253 IRX6P78412 446 aaPredicted RBP11.09□□□□□ -0.63
SYNE1-206ENST00000367253 CLSTN1O94985 981 aa11.08□□□□□ -0.63
SYNE1-206ENST00000367253 CEP162Q5TB80 1403 aa11.08□□□□□ -0.64
SYNE1-206ENST00000367253 CARMIL1Q5VZK9 1371 aa11.08□□□□□ -0.64
SYNE1-206ENST00000367253 FAM69CQ0P6D2 419 aa11.07□□□□□ -0.64
SYNE1-206ENST00000367253 CTDP1Q9Y5B0 961 aaPredicted RBP11.07□□□□□ -0.64
SYNE1-206ENST00000367253 KDM2AQ9Y2K7 1162 aa11.06□□□□□ -0.64
SYNE1-206ENST00000367253 HSP90B1P14625 803 aaKnown RBP11.06□□□□□ -0.64
SYNE1-206ENST00000367253 CHIC2Q9UKJ5 165 aa11.06□□□□□ -0.64
SYNE1-206ENST00000367253 TONSLQ96HA7 1378 aa11.06□□□□□ -0.64
SYNE1-206ENST00000367253 MAPK8IP3Q9UPT6 1336 aa11.05□□□□□ -0.64
SYNE1-206ENST00000367253 CHMP4BQ9H444 224 aaKnown RBP11.05□□□□□ -0.64
SYNE1-206ENST00000367253 HDAC5Q9UQL6 1122 aa11.05□□□□□ -0.64
SYNE1-206ENST00000367253 CNKSR2Q8WXI2 1034 aa11.04□□□□□ -0.64
SYNE1-206ENST00000367253 NGDNQ8NEJ9 315 aaKnown RBP11.03□□□□□ -0.64
SYNE1-206ENST00000367253 ZNF330Q9Y3S2 320 aaPredicted RBP11.03□□□□□ -0.64
SYNE1-206ENST00000367253 HDGFL2Q7Z4V5 671 aaPredicted RBP11.02□□□□□ -0.64
SYNE1-206ENST00000367253 RTF1Q92541 710 aaKnown RBP11.02□□□□□ -0.64
SYNE1-206ENST00000367253 OS9Q13438 667 aaPredicted RBP11.02□□□□□ -0.65
SYNE1-206ENST00000367253 STK11IPQ8N1F8 1099 aa11.02□□□□□ -0.65
SYNE1-206ENST00000367253 CCAR1Q8IX12 1150 aaKnown RBP11.01□□□□□ -0.65
SYNE1-206ENST00000367253 TRIM34Q9BYJ4 488 aa11□□□□□ -0.65
SYNE1-206ENST00000367253 ZRSR1Q15695 479 aaKnown RBP11□□□□□ -0.65
SYNE1-206ENST00000367253 TDRD9Q8NDG6 1382 aaKnown RBP10.99□□□□□ -0.65
SYNE1-206ENST00000367253 BBXQ8WY36 941 aaPredicted RBP10.98□□□□□ -0.65
SYNE1-206ENST00000367253 WWC1Q8IX03 1113 aa10.98□□□□□ -0.65
SYNE1-206ENST00000367253 FGD5Q6ZNL6 1462 aa10.98□□□□□ -0.65
SYNE1-206ENST00000367253 ZNF710Q8N1W2 664 aa10.98□□□□□ -0.65
SYNE1-206ENST00000367253 PRM3Q9NNZ6 103 aa10.98□□□□□ -0.65
SYNE1-206ENST00000367253 LAMC3Q9Y6N6 1575 aa10.98□□□□□ -0.65
SYNE1-206ENST00000367253 FAM9BQ8IZU0 186 aa10.97□□□□□ -0.65
SYNE1-206ENST00000367253 MAP3K9P80192 1104 aa10.97□□□□□ -0.65
SYNE1-206ENST00000367253 C16orf71Q8IYS4 520 aaPredicted RBP10.97□□□□□ -0.65
SYNE1-206ENST00000367253 FRAT2O75474 233 aaPredicted RBP10.96□□□□□ -0.65
SYNE1-206ENST00000367253 POGZQ7Z3K3 1410 aa10.96□□□□□ -0.66
SYNE1-206ENST00000367253 RGL3Q3MIN7 710 aa10.96□□□□□ -0.66
SYNE1-206ENST00000367253 PSMD1Q99460 953 aa10.96□□□□□ -0.66
SYNE1-206ENST00000367253 MAPK8IP2Q13387 824 aaPredicted RBP10.95□□□□□ -0.66
SYNE1-206ENST00000367253 RAPGEF2Q9Y4G8 1499 aa10.95□□□□□ -0.66
SYNE1-206ENST00000367253 TAOK2Q9UL54 1235 aa10.95□□□□□ -0.66
SYNE1-206ENST00000367253 WASHC2CQ9Y4E1 1318 aa10.95□□□□□ -0.66
SYNE1-206ENST00000367253 CHAF1AQ13111 956 aaPredicted RBP10.95□□□□□ -0.66
SYNE1-206ENST00000367253 NOL10Q9BSC4 688 aaKnown RBP10.95□□□□□ -0.66
SYNE1-206ENST00000367253 TOP2BQ02880 1626 aa10.95□□□□□ -0.66
SYNE1-206ENST00000367253 ZMYND15Q9H091 742 aa10.94□□□□□ -0.66
SYNE1-206ENST00000367253 CCNB3Q8WWL7 1395 aa10.94□□□□□ -0.66
SYNE1-206ENST00000367253 KNSTRNQ9Y448 316 aa10.94□□□□□ -0.66
SYNE1-206ENST00000367253 FHAD1B1AJZ9 1412 aa10.94□□□□□ -0.66
SYNE1-206ENST00000367253 NESP48681 1621 aa10.94□□□□□ -0.66
SYNE1-206ENST00000367253 NUTM2BA6NNL0 878 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-206ENST00000367253 NUTM2EB1AL46 878 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-206ENST00000367253 SOX12O15370 315 aa10.93□□□□□ -0.66
SYNE1-206ENST00000367253 NUTM2DQ5VT03 806 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-206ENST00000367253 NUTM2AQ8IVF1 878 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-206ENST00000367253 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.93□□□□□ -0.66
SYNE1-206ENST00000367253 PIP4K2BP78356 416 aa10.93□□□□□ -0.66
SYNE1-206ENST00000367253 SYNJ1O43426 1573 aa10.93□□□□□ -0.66
SYNE1-206ENST00000367253 CASC1Q6TDU7 716 aa10.93□□□□□ -0.66
SYNE1-206ENST00000367253 FGD1P98174 961 aa10.93□□□□□ -0.66
SYNE1-206ENST00000367253 RSPH4AQ5TD94 716 aa10.92□□□□□ -0.66
SYNE1-206ENST00000367253 RUSC2Q8N2Y8 1516 aa10.92□□□□□ -0.66
SYNE1-206ENST00000367253 NRDCO43847 1150 aa10.92□□□□□ -0.66
SYNE1-206ENST00000367253 AEBP1Q8IUX7 1158 aa10.91□□□□□ -0.66
SYNE1-206ENST00000367253 NOP58Q9Y2X3 529 aaKnown RBP10.91□□□□□ -0.66
SYNE1-206ENST00000367253 RBM10P98175 930 aaKnown RBP10.91□□□□□ -0.66
SYNE1-206ENST00000367253 IGF1RP08069 1367 aa10.91□□□□□ -0.66
SYNE1-206ENST00000367253 NEFHP12036 1026 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms