RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 NUP153P49790 1475 aaKnown RBP14.79□□□□□ -0.04
HMGB1P39-201ENST00000366304 MLECQ14165 292 aa14.79□□□□□ -0.04
HMGB1P39-201ENST00000366304 AKNAQ7Z591 1439 aa14.79□□□□□ -0.04
HMGB1P39-201ENST00000366304 RAPGEF6Q8TEU7 1601 aa14.77□□□□□ -0.05
HMGB1P39-201ENST00000366304 ZMYM4Q5VZL5 1548 aa14.76□□□□□ -0.05
HMGB1P39-201ENST00000366304 FANCAO15360 1455 aa14.76□□□□□ -0.05
HMGB1P39-201ENST00000366304 TTC37Q6PGP7 1564 aa14.76□□□□□ -0.05
HMGB1P39-201ENST00000366304 CEBPAP49715 358 aaPredicted RBP14.75□□□□□ -0.05
HMGB1P39-201ENST00000366304 SAMD9Q5K651 1589 aa14.75□□□□□ -0.05
HMGB1P39-201ENST00000366304 SPATA31D1Q6ZQQ2 1576 aa14.75□□□□□ -0.05
HMGB1P39-201ENST00000366304 ZFYVE16Q7Z3T8 1539 aa14.75□□□□□ -0.05
HMGB1P39-201ENST00000366304 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.74□□□□□ -0.05
HMGB1P39-201ENST00000366304 HNRNPUL2Q1KMD3 747 aaKnown RBP14.74□□□□□ -0.05
HMGB1P39-201ENST00000366304 STRCQ7RTU9 1775 aa14.74□□□□□ -0.05
HMGB1P39-201ENST00000366304 POGZQ7Z3K3 1410 aa14.74□□□□□ -0.05
HMGB1P39-201ENST00000366304 HECW1Q76N89 1606 aa14.73□□□□□ -0.05
HMGB1P39-201ENST00000366304 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.72□□□□□ -0.05
HMGB1P39-201ENST00000366304 ARHGEF12Q9NZN5 1544 aa14.72□□□□□ -0.05
HMGB1P39-201ENST00000366304 FER1L4A9Z1Z3 1794 aa14.72□□□□□ -0.05
HMGB1P39-201ENST00000366304 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.71□□□□□ -0.05
HMGB1P39-201ENST00000366304 EFCAB5A4FU69 1503 aa14.7□□□□□ -0.06
HMGB1P39-201ENST00000366304 RNF39Q9H2S5 420 aa14.69□□□□□ -0.06
HMGB1P39-201ENST00000366304 PREX1Q8TCU6 1659 aa14.68□□□□□ -0.06
HMGB1P39-201ENST00000366304 MAGI2Q86UL8 1455 aa14.68□□□□□ -0.06
HMGB1P39-201ENST00000366304 LTBP4Q8N2S1 1624 aa14.66□□□□□ -0.06
HMGB1P39-201ENST00000366304 SCAPERQ9BY12 1400 aa14.66□□□□□ -0.06
HMGB1P39-201ENST00000366304 CFAP74Q9C0B2 1584 aa14.65□□□□□ -0.06
HMGB1P39-201ENST00000366304 ATP10AO60312 1499 aa14.65□□□□□ -0.06
HMGB1P39-201ENST00000366304 PLEKHD1A6NEE1 506 aa14.65□□□□□ -0.06
HMGB1P39-201ENST00000366304 FAM9AQ8IZU1 332 aaPredicted RBP14.64□□□□□ -0.07
HMGB1P39-201ENST00000366304 RANGAP1P46060 587 aaPredicted RBP14.63□□□□□ -0.07
HMGB1P39-201ENST00000366304 PTPRTO14522 1441 aa14.62□□□□□ -0.07
HMGB1P39-201ENST00000366304 C9orf84Q5VXU9 1444 aa14.62□□□□□ -0.07
HMGB1P39-201ENST00000366304 PLCH2O75038 1416 aa14.61□□□□□ -0.07
HMGB1P39-201ENST00000366304 UHRF1BP1Q6BDS2 1440 aa14.61□□□□□ -0.07
HMGB1P39-201ENST00000366304 CDK13Q14004 1512 aaKnown RBP14.6□□□□□ -0.07
HMGB1P39-201ENST00000366304 SLC4A1APQ9BWU0 796 aaKnown RBP14.58□□□□□ -0.08
HMGB1P39-201ENST00000366304 AFAP1Q8N556 730 aa14.56□□□□□ -0.08
HMGB1P39-201ENST00000366304 CACNB1Q02641 598 aaPredicted RBP14.54□□□□□ -0.08
HMGB1P39-201ENST00000366304 CSRNP3Q8WYN3 585 aa14.54□□□□□ -0.08
HMGB1P39-201ENST00000366304 NCOA1Q15788 1441 aa14.54□□□□□ -0.08
HMGB1P39-201ENST00000366304 IQSEC2Q5JU85 1478 aa14.54□□□□□ -0.08
HMGB1P39-201ENST00000366304 C3P01024 1663 aa14.54□□□□□ -0.08
HMGB1P39-201ENST00000366304 DIP2CQ9Y2E4 1556 aa14.53□□□□□ -0.08
HMGB1P39-201ENST00000366304 SLC4A2P04920 1241 aa14.53□□□□□ -0.08
HMGB1P39-201ENST00000366304 KDM5CP41229 1560 aa14.52□□□□□ -0.08
HMGB1P39-201ENST00000366304 EFCAB2Q5VUJ9 269 aa14.51□□□□□ -0.09
HMGB1P39-201ENST00000366304 TRAPPC8Q9Y2L5 1435 aa14.5□□□□□ -0.09
HMGB1P39-201ENST00000366304 ZNF335Q9H4Z2 1342 aaPredicted RBP14.5□□□□□ -0.09
HMGB1P39-201ENST00000366304 KIF14Q15058 1648 aa14.49□□□□□ -0.09
HMGB1P39-201ENST00000366304 ABCA6Q8N139 1617 aa14.49□□□□□ -0.09
HMGB1P39-201ENST00000366304 ZNF518AQ6AHZ1 1483 aa14.49□□□□□ -0.09
HMGB1P39-201ENST00000366304 SETD1BQ9UPS6 1966 aaKnown RBP14.48□□□□□ -0.09
HMGB1P39-201ENST00000366304 C1QBPQ07021 282 aaKnown RBP14.48□□□□□ -0.09
HMGB1P39-201ENST00000366304 REREQ9P2R6 1566 aa14.47□□□□□ -0.09
HMGB1P39-201ENST00000366304 NCKAP5LQ9HCH0 1330 aa14.47□□□□□ -0.09
HMGB1P39-201ENST00000366304 UBAP1LF5GYI3 381 aa14.47□□□□□ -0.09
HMGB1P39-201ENST00000366304 CAMSAP1Q5T5Y3 1602 aa14.46□□□□□ -0.09
HMGB1P39-201ENST00000366304 MYO5CQ9NQX4 1742 aa14.46□□□□□ -0.1
HMGB1P39-201ENST00000366304 AGLP35573 1532 aa14.45□□□□□ -0.1
HMGB1P39-201ENST00000366304 MLH3Q9UHC1 1453 aa14.44□□□□□ -0.1
HMGB1P39-201ENST00000366304 ARHGAP5Q13017 1502 aa14.43□□□□□ -0.1
HMGB1P39-201ENST00000366304 U3KPZ7 1027 aaPredicted RBP14.43□□□□□ -0.1
HMGB1P39-201ENST00000366304 HSPA1LP34931 641 aa14.41□□□□□ -0.1
HMGB1P39-201ENST00000366304 MYT1LQ9UL68 1186 aa14.41□□□□□ -0.1
HMGB1P39-201ENST00000366304 MED1Q15648 1581 aaPredicted RBP14.41□□□□□ -0.1
HMGB1P39-201ENST00000366304 ATP1B4Q9UN42 357 aaPredicted RBP14.39□□□□□ -0.11
HMGB1P39-201ENST00000366304 TROQ12816 1431 aaPredicted RBP14.39□□□□□ -0.11
HMGB1P39-201ENST00000366304 NPATQ14207 1427 aa14.39□□□□□ -0.11
HMGB1P39-201ENST00000366304 TCOF1Q13428 1488 aaKnown RBP14.38□□□□□ -0.11
HMGB1P39-201ENST00000366304 KIDINS220Q9ULH0 1771 aa14.37□□□□□ -0.11
HMGB1P39-201ENST00000366304 ZMYM3Q14202 1370 aa14.37□□□□□ -0.11
HMGB1P39-201ENST00000366304 ABCC1P33527 1531 aa14.37□□□□□ -0.11
HMGB1P39-201ENST00000366304 ESF1Q9H501 851 aaKnown RBP14.37□□□□□ -0.11
HMGB1P39-201ENST00000366304 CNTLNQ9NXG0 1405 aa14.37□□□□□ -0.11
HMGB1P39-201ENST00000366304 CDC42BPBQ9Y5S2 1711 aa14.37□□□□□ -0.11
HMGB1P39-201ENST00000366304 LRRIQ1Q96JM4 1722 aa14.35□□□□□ -0.11
HMGB1P39-201ENST00000366304 ARHGAP35Q9NRY4 1499 aa14.34□□□□□ -0.11
HMGB1P39-201ENST00000366304 PLA2R1Q13018 1463 aa14.33□□□□□ -0.12
HMGB1P39-201ENST00000366304 PIP4K2BP78356 416 aa14.33□□□□□ -0.12
HMGB1P39-201ENST00000366304 MYO3AQ8NEV4 1616 aa14.33□□□□□ -0.12
HMGB1P39-201ENST00000366304 MROH2AA6NES4 1674 aa14.33□□□□□ -0.12
HMGB1P39-201ENST00000366304 ITSN2Q9NZM3 1697 aa14.33□□□□□ -0.12
HMGB1P39-201ENST00000366304 PTPRKQ15262 1439 aa14.32□□□□□ -0.12
HMGB1P39-201ENST00000366304 PKD2Q13563 968 aa14.32□□□□□ -0.12
HMGB1P39-201ENST00000366304 CEP170BQ9Y4F5 1589 aaPredicted RBP14.31□□□□□ -0.12
HMGB1P39-201ENST00000366304 PREX2Q70Z35 1606 aa14.31□□□□□ -0.12
HMGB1P39-201ENST00000366304 ALKQ9UM73 1620 aa14.31□□□□□ -0.12
HMGB1P39-201ENST00000366304 ZNF142P52746 1687 aaPredicted RBP14.31□□□□□ -0.12
HMGB1P39-201ENST00000366304 CDK11AQ9UQ88 783 aaPredicted RBP14.31□□□□□ -0.12
HMGB1P39-201ENST00000366304 EEA1Q15075 1411 aa14.31□□□□□ -0.12
HMGB1P39-201ENST00000366304 FMN1Q68DA7 1419 aa14.31□□□□□ -0.12
HMGB1P39-201ENST00000366304 SAMD9LQ8IVG5 1584 aa14.3□□□□□ -0.12
HMGB1P39-201ENST00000366304 EHMT2Q96KQ7 1210 aa14.3□□□□□ -0.12
HMGB1P39-201ENST00000366304 CLTCQ00610 1675 aaKnown RBP14.29□□□□□ -0.12
HMGB1P39-201ENST00000366304 CLIP1P30622 1438 aa14.28□□□□□ -0.12
HMGB1P39-201ENST00000366304 SUPT6HQ7KZ85 1726 aaKnown RBP14.26□□□□□ -0.13
HMGB1P39-201ENST00000366304 PLXNC1O60486 1568 aa14.26□□□□□ -0.13
HMGB1P39-201ENST00000366304 NEURL4Q96JN8 1562 aa14.26□□□□□ -0.13
HMGB1P39-201ENST00000366304 HNRNPMP52272 730 aaKnown RBP eCLIP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms