RNA–Protein interactions for RNA: ENST00000361373.8

LDB3-202, Transcript of LIM domain binding 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDB3, Length 5,297 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-202ENST00000361373 LAS1LQ9Y4W2 734 aaKnown RBP17.47■□□□□ 0.39
LDB3-202ENST00000361373 HSPA5P11021 654 aaKnown RBP17.46■□□□□ 0.39
LDB3-202ENST00000361373 HNRNPMP52272 730 aaKnown RBP eCLIP17.45■□□□□ 0.38
LDB3-202ENST00000361373 ARXQ96QS3 562 aa17.44■□□□□ 0.38
LDB3-202ENST00000361373 ROCK2O75116 1388 aaKnown RBP17.44■□□□□ 0.38
LDB3-202ENST00000361373 OSCARQ8IYS5 282 aa17.44■□□□□ 0.38
LDB3-202ENST00000361373 KTN1Q86UP2 1357 aaKnown RBP17.44■□□□□ 0.38
LDB3-202ENST00000361373 WASHC2CQ9Y4E1 1318 aa17.43■□□□□ 0.38
LDB3-202ENST00000361373 EID1Q9Y6B2 187 aa17.42■□□□□ 0.38
LDB3-202ENST00000361373 ANP32EQ9BTT0 268 aa17.42■□□□□ 0.38
LDB3-202ENST00000361373 GAPVD1Q14C86 1478 aa17.42■□□□□ 0.38
LDB3-202ENST00000361373 SUPT16HQ9Y5B9 1047 aaKnown RBP17.41■□□□□ 0.38
LDB3-202ENST00000361373 STK26Q9P289 416 aa17.41■□□□□ 0.38
LDB3-202ENST00000361373 RALBP1Q15311 655 aa17.4■□□□□ 0.38
LDB3-202ENST00000361373 CHMP4AQ9BY43 222 aa17.4■□□□□ 0.38
LDB3-202ENST00000361373 PPP4R2Q9NY27 417 aa17.4■□□□□ 0.38
LDB3-202ENST00000361373 CALD1Q05682 793 aaKnown RBP17.39■□□□□ 0.37
LDB3-202ENST00000361373 SAFB2Q14151 953 aaKnown RBP eCLIP17.39■□□□□ 0.37
LDB3-202ENST00000361373 NCLP19338 710 aaKnown RBP17.39■□□□□ 0.37
LDB3-202ENST00000361373 FOXD1Q16676 465 aa17.38■□□□□ 0.37
LDB3-202ENST00000361373 FGD5Q6ZNL6 1462 aa17.38■□□□□ 0.37
LDB3-202ENST00000361373 GOLGA6L22H0YM25 854 aa17.38■□□□□ 0.37
LDB3-202ENST00000361373 FRAT1Q92837 279 aaPredicted RBP17.37■□□□□ 0.37
LDB3-202ENST00000361373 IGF1RP08069 1367 aa17.37■□□□□ 0.37
LDB3-202ENST00000361373 RTF1Q92541 710 aaKnown RBP17.36■□□□□ 0.37
LDB3-202ENST00000361373 TERF2IPQ9NYB0 399 aa17.36■□□□□ 0.37
LDB3-202ENST00000361373 UACAQ9BZF9 1416 aa17.34■□□□□ 0.37
LDB3-202ENST00000361373 NPHP1O15259 732 aa17.32■□□□□ 0.36
LDB3-202ENST00000361373 L3MBTL2Q969R5 705 aa17.32■□□□□ 0.36
LDB3-202ENST00000361373 OS9Q13438 667 aaPredicted RBP17.31■□□□□ 0.36
LDB3-202ENST00000361373 CFAP44Q96MT7 982 aa17.31■□□□□ 0.36
LDB3-202ENST00000361373 IPO8O15397 1037 aaKnown RBP17.3■□□□□ 0.36
LDB3-202ENST00000361373 SOX12O15370 315 aa17.29■□□□□ 0.36
LDB3-202ENST00000361373 CCDC144AA2RUR9 1427 aa17.29■□□□□ 0.36
LDB3-202ENST00000361373 RUSC2Q8N2Y8 1516 aa17.27■□□□□ 0.36
LDB3-202ENST00000361373 SENP3-EIF4A1A0A087X0R7 540 aa17.27■□□□□ 0.36
LDB3-202ENST00000361373 VGFO15240 615 aaPredicted RBP17.27■□□□□ 0.35
LDB3-202ENST00000361373 U2AF1L5P0DN76 240 aaPredicted RBP17.27■□□□□ 0.35
LDB3-202ENST00000361373 U2AF1Q01081 240 aaKnown RBP eCLIP17.27■□□□□ 0.35
LDB3-202ENST00000361373 CYB5RLQ6IPT4 315 aa17.27■□□□□ 0.35
LDB3-202ENST00000361373 PAK3O75914 559 aaPredicted RBP17.26■□□□□ 0.35
LDB3-202ENST00000361373 MYOM3Q5VTT5 1437 aa17.25■□□□□ 0.35
LDB3-202ENST00000361373 RAD54L2Q9Y4B4 1467 aa17.24■□□□□ 0.35
LDB3-202ENST00000361373 CDK11BP21127 795 aaKnown RBP17.24■□□□□ 0.35
LDB3-202ENST00000361373 STAC3Q96MF2 364 aa17.24■□□□□ 0.35
LDB3-202ENST00000361373 ERICH6BQ5W0A0 696 aa17.23■□□□□ 0.35
LDB3-202ENST00000361373 CSB-PGBD3P0DP91 1061 aa17.22■□□□□ 0.35
LDB3-202ENST00000361373 GRIN2BQ13224 1484 aa17.22■□□□□ 0.35
LDB3-202ENST00000361373 NBR1Q14596 966 aa17.22■□□□□ 0.35
LDB3-202ENST00000361373 ZRSR1Q15695 479 aaKnown RBP17.21■□□□□ 0.35
LDB3-202ENST00000361373 NLRP13Q86W25 1043 aa17.21■□□□□ 0.35
LDB3-202ENST00000361373 PHLDB1Q86UU1 1377 aa17.21■□□□□ 0.35
LDB3-202ENST00000361373 RGS3P49796 1198 aa17.21■□□□□ 0.35
LDB3-202ENST00000361373 GOLGA2Q08379 1002 aa17.21■□□□□ 0.35
LDB3-202ENST00000361373 NGDNQ8NEJ9 315 aaKnown RBP17.21■□□□□ 0.35
LDB3-202ENST00000361373 HDAC5Q9UQL6 1122 aa17.21■□□□□ 0.35
LDB3-202ENST00000361373 CFTRP13569 1480 aa17.21■□□□□ 0.34
LDB3-202ENST00000361373 LMOD3Q0VAK6 560 aa17.19■□□□□ 0.34
LDB3-202ENST00000361373 CUX1P39880 1505 aa17.18■□□□□ 0.34
LDB3-202ENST00000361373 KCNJ4P48050 445 aa17.17■□□□□ 0.34
LDB3-202ENST00000361373 FGD1P98174 961 aa17.16■□□□□ 0.34
LDB3-202ENST00000361373 PDE3BQ13370 1112 aa17.16■□□□□ 0.34
LDB3-202ENST00000361373 AQRO60306 1485 aaKnown RBP eCLIP17.16■□□□□ 0.34
LDB3-202ENST00000361373 MCCP23508 829 aa17.14■□□□□ 0.33
LDB3-202ENST00000361373 STK31Q9BXU1 1019 aa17.14■□□□□ 0.33
LDB3-202ENST00000361373 TRAK1Q9UPV9 953 aa17.14■□□□□ 0.33
LDB3-202ENST00000361373 DHX57Q6P158 1386 aaKnown RBP17.13■□□□□ 0.33
LDB3-202ENST00000361373 HMGXB3Q12766 1538 aa17.13■□□□□ 0.33
LDB3-202ENST00000361373 EVC2Q86UK5 1308 aa17.13■□□□□ 0.33
LDB3-202ENST00000361373 KIF15Q9NS87 1388 aa17.13■□□□□ 0.33
LDB3-202ENST00000361373 RCAN3Q9UKA8 241 aa17.13■□□□□ 0.33
LDB3-202ENST00000361373 MRC2Q9UBG0 1479 aa17.12■□□□□ 0.33
LDB3-202ENST00000361373 IFT140Q96RY7 1462 aa17.12■□□□□ 0.33
LDB3-202ENST00000361373 AMPHP49418 695 aa17.12■□□□□ 0.33
LDB3-202ENST00000361373 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.12■□□□□ 0.33
LDB3-202ENST00000361373 FGD6Q6ZV73 1430 aa17.11■□□□□ 0.33
LDB3-202ENST00000361373 CASKIN1Q8WXD9 1431 aa17.11■□□□□ 0.33
LDB3-202ENST00000361373 RWDD1Q9H446 243 aaPredicted RBP17.11■□□□□ 0.33
LDB3-202ENST00000361373 FAM69CQ0P6D2 419 aa17.1■□□□□ 0.33
LDB3-202ENST00000361373 ST20-MTHFSA0A0A6YYL1 179 aa17.1■□□□□ 0.33
LDB3-202ENST00000361373 ERICH3Q5RHP9 1530 aa17.09■□□□□ 0.33
LDB3-202ENST00000361373 TRIM44Q96DX7 344 aaPredicted RBP17.09■□□□□ 0.33
LDB3-202ENST00000361373 NUTM2DQ5VT03 806 aaPredicted RBP17.09■□□□□ 0.33
LDB3-202ENST00000361373 HSP90AB1P08238 724 aaKnown RBP17.08■□□□□ 0.33
LDB3-202ENST00000361373 B4GALNT3Q6L9W6 998 aa17.08■□□□□ 0.33
LDB3-202ENST00000361373 CGNL1Q0VF96 1302 aa17.07■□□□□ 0.32
LDB3-202ENST00000361373 FYCO1Q9BQS8 1478 aa17.07■□□□□ 0.32
LDB3-202ENST00000361373 MYBBP1AQ9BQG0 1328 aaKnown RBP17.06■□□□□ 0.32
LDB3-202ENST00000361373 SYNJ2O15056 1496 aa17.06■□□□□ 0.32
LDB3-202ENST00000361373 HMMRO75330 724 aa17.05■□□□□ 0.32
LDB3-202ENST00000361373 HSCBQ8IWL3 235 aa17.05■□□□□ 0.32
LDB3-202ENST00000361373 PMFBP1Q8TBY8 1022 aa17.04■□□□□ 0.32
LDB3-202ENST00000361373 COG3Q96JB2 828 aa17.04■□□□□ 0.32
LDB3-202ENST00000361373 LRRC9Q6ZRR7 1453 aa17.03■□□□□ 0.32
LDB3-202ENST00000361373 NGEFQ8N5V2 710 aa17.03■□□□□ 0.32
LDB3-202ENST00000361373 ITPRIPQ8IWB1 547 aa17.03■□□□□ 0.32
LDB3-202ENST00000361373 KIAA1211Q6ZU35 1233 aa17.03■□□□□ 0.32
LDB3-202ENST00000361373 PANK3Q9H999 370 aa17.03■□□□□ 0.32
LDB3-202ENST00000361373 USP47Q96K76 1375 aa17.02■□□□□ 0.32
LDB3-202ENST00000361373 SMC4Q9NTJ3 1288 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms