RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 GBP4Q96PP9 640 aa12.23□□□□□ -0.45
CUX1-203ENST00000360264 HIRIP3Q9BW71 556 aaPredicted RBP12.23□□□□□ -0.45
CUX1-203ENST00000360264 CEP162Q5TB80 1403 aa12.23□□□□□ -0.45
CUX1-203ENST00000360264 NEUROD2Q15784 382 aa12.23□□□□□ -0.45
CUX1-203ENST00000360264 SYAP1Q96A49 352 aaPredicted RBP12.22□□□□□ -0.45
CUX1-203ENST00000360264 WRNQ14191 1432 aaPredicted RBP eCLIP12.22□□□□□ -0.452e-6■■■■■ 54.1
CUX1-203ENST00000360264 NOP58Q9Y2X3 529 aaKnown RBP12.22□□□□□ -0.45
CUX1-203ENST00000360264 DRC7Q8IY82 874 aa12.22□□□□□ -0.45
CUX1-203ENST00000360264 TNIKQ9UKE5 1360 aa12.21□□□□□ -0.45
CUX1-203ENST00000360264 RGS3P49796 1198 aa12.21□□□□□ -0.45
CUX1-203ENST00000360264 CSPP1Q1MSJ5 1256 aa12.2□□□□□ -0.46
CUX1-203ENST00000360264 SRPK2P78362 688 aaKnown RBP12.19□□□□□ -0.46
CUX1-203ENST00000360264 MORC1Q86VD1 984 aa12.19□□□□□ -0.46
CUX1-203ENST00000360264 SUPT16HQ9Y5B9 1047 aaKnown RBP12.19□□□□□ -0.46
CUX1-203ENST00000360264 CC2D1BQ5T0F9 858 aaKnown RBP12.18□□□□□ -0.46
CUX1-203ENST00000360264 TAOK2Q9UL54 1235 aa12.18□□□□□ -0.46
CUX1-203ENST00000360264 SPAG9O60271 1321 aaKnown RBP12.18□□□□□ -0.46
CUX1-203ENST00000360264 LMOD3Q0VAK6 560 aa12.16□□□□□ -0.46
CUX1-203ENST00000360264 RALBP1Q15311 655 aa12.16□□□□□ -0.46
CUX1-203ENST00000360264 HMMRO75330 724 aa12.16□□□□□ -0.46
CUX1-203ENST00000360264 TRHP20396 242 aaPredicted RBP12.15□□□□□ -0.46
CUX1-203ENST00000360264 PHF14O94880 888 aa12.15□□□□□ -0.46
CUX1-203ENST00000360264 CHMP4CQ96CF2 233 aa12.15□□□□□ -0.46
CUX1-203ENST00000360264 PRM3Q9NNZ6 103 aa12.15□□□□□ -0.46
CUX1-203ENST00000360264 STK31Q9BXU1 1019 aa12.15□□□□□ -0.46
CUX1-203ENST00000360264 KTN1Q86UP2 1357 aaKnown RBP12.14□□□□□ -0.47
CUX1-203ENST00000360264 NCBP3Q53F19 620 aaKnown RBP12.13□□□□□ -0.47
CUX1-203ENST00000360264 GOLGA6L1Q8N7Z2 621 aa12.13□□□□□ -0.47
CUX1-203ENST00000360264 CARMIL2Q6F5E8 1435 aa12.13□□□□□ -0.47
CUX1-203ENST00000360264 EIF4G1Q04637 1599 aaKnown RBP12.12□□□□□ -0.47
CUX1-203ENST00000360264 TAF7LQ5H9L4 462 aa12.12□□□□□ -0.47
CUX1-203ENST00000360264 DCAF11Q8TEB1 546 aa12.12□□□□□ -0.47
CUX1-203ENST00000360264 CCER2I3L3R5 266 aa12.12□□□□□ -0.47
CUX1-203ENST00000360264 CSB-PGBD3P0DP91 1061 aa12.12□□□□□ -0.47
CUX1-203ENST00000360264 KIF3AQ9Y496 699 aa12.11□□□□□ -0.47
CUX1-203ENST00000360264 A0A0U1RQG5 324 aaPredicted RBP12.1□□□□□ -0.47
CUX1-203ENST00000360264 ROCK2O75116 1388 aaKnown RBP12.1□□□□□ -0.47
CUX1-203ENST00000360264 G3V3G9 751 aa12.1□□□□□ -0.47
CUX1-203ENST00000360264 DCAF8Q5TAQ9 597 aa12.1□□□□□ -0.47
CUX1-203ENST00000360264 RWDD1Q9H446 243 aaPredicted RBP12.1□□□□□ -0.47
CUX1-203ENST00000360264 EID1Q9Y6B2 187 aa12.1□□□□□ -0.47
CUX1-203ENST00000360264 ARHGAP35Q9NRY4 1499 aa12.08□□□□□ -0.48
CUX1-203ENST00000360264 GORABQ5T7V8 394 aa12.08□□□□□ -0.48
CUX1-203ENST00000360264 PAK3O75914 559 aaPredicted RBP12.08□□□□□ -0.48
CUX1-203ENST00000360264 TERF2IPQ9NYB0 399 aa12.08□□□□□ -0.48
CUX1-203ENST00000360264 BAZ1AQ9NRL2 1556 aaPredicted RBP12.07□□□□□ -0.48
CUX1-203ENST00000360264 TPM3P06753 285 aa12.07□□□□□ -0.48
CUX1-203ENST00000360264 CEP89Q96ST8 783 aa12.07□□□□□ -0.48
CUX1-203ENST00000360264 PMFBP1Q8TBY8 1022 aa12.06□□□□□ -0.48
CUX1-203ENST00000360264 ST18O60284 1047 aa12.06□□□□□ -0.48
CUX1-203ENST00000360264 U2AF1L5P0DN76 240 aaPredicted RBP12.06□□□□□ -0.48
CUX1-203ENST00000360264 U2AF1Q01081 240 aaKnown RBP eCLIP12.06□□□□□ -0.485e-6■□□□□ 11.2
CUX1-203ENST00000360264 ANO8Q9HCE9 1232 aaPredicted RBP12.06□□□□□ -0.48
CUX1-203ENST00000360264 PHLDB1Q86UU1 1377 aa12.06□□□□□ -0.48
CUX1-203ENST00000360264 ITPRIPQ8IWB1 547 aa12.06□□□□□ -0.48
CUX1-203ENST00000360264 KIF16BQ96L93 1317 aa12.06□□□□□ -0.48
CUX1-203ENST00000360264 ANKRD30AQ9BXX3 1397 aa12.05□□□□□ -0.48
CUX1-203ENST00000360264 RASSF8Q8NHQ8 419 aa12.05□□□□□ -0.48
CUX1-203ENST00000360264 CARMIL1Q5VZK9 1371 aa12.05□□□□□ -0.48
CUX1-203ENST00000360264 FMN1Q68DA7 1419 aa12.05□□□□□ -0.48
CUX1-203ENST00000360264 SOX12O15370 315 aa12.05□□□□□ -0.48
CUX1-203ENST00000360264 HSP90B1P14625 803 aaKnown RBP12.05□□□□□ -0.48
CUX1-203ENST00000360264 SETD5Q9C0A6 1442 aa12.04□□□□□ -0.48
CUX1-203ENST00000360264 TCERG1O14776 1098 aaKnown RBP12.03□□□□□ -0.48
CUX1-203ENST00000360264 LRRFIP1Q32MZ4 808 aaKnown RBP12.03□□□□□ -0.48
CUX1-203ENST00000360264 RSPH4AQ5TD94 716 aa12.03□□□□□ -0.48
CUX1-203ENST00000360264 CHMP3Q9Y3E7 222 aa12.03□□□□□ -0.48
CUX1-203ENST00000360264 ZNF330Q9Y3S2 320 aaPredicted RBP12.03□□□□□ -0.48
CUX1-203ENST00000360264 MLECQ14165 292 aa12.02□□□□□ -0.48
CUX1-203ENST00000360264 FRAT2O75474 233 aaPredicted RBP12.02□□□□□ -0.49
CUX1-203ENST00000360264 TPM2P07951 284 aa12.02□□□□□ -0.49
CUX1-203ENST00000360264 RCAN3Q9UKA8 241 aa12.02□□□□□ -0.49
CUX1-203ENST00000360264 STK26Q9P289 416 aa12.01□□□□□ -0.49
CUX1-203ENST00000360264 B4GALNT3Q6L9W6 998 aa12.01□□□□□ -0.49
CUX1-203ENST00000360264 GGT6Q6P531 493 aa12.01□□□□□ -0.49
CUX1-203ENST00000360264 TRIM6-TRIM34B2RNG4 842 aa12.01□□□□□ -0.49
CUX1-203ENST00000360264 AKAP17AQ02040 695 aaKnown RBP12.01□□□□□ -0.49
CUX1-203ENST00000360264 MARCH6O60337 910 aa12.01□□□□□ -0.49
CUX1-203ENST00000360264 PDE3BQ13370 1112 aa12□□□□□ -0.49
CUX1-203ENST00000360264 TNNT3P45378 269 aaPredicted RBP12□□□□□ -0.49
CUX1-203ENST00000360264 NOL10Q9BSC4 688 aaKnown RBP12□□□□□ -0.49
CUX1-203ENST00000360264 UACAQ9BZF9 1416 aa12□□□□□ -0.49
CUX1-203ENST00000360264 TSR1Q2NL82 804 aaKnown RBP11.99□□□□□ -0.49
CUX1-203ENST00000360264 VPS53Q5VIR6 699 aa11.99□□□□□ -0.49
CUX1-203ENST00000360264 SAFB2Q14151 953 aaKnown RBP eCLIP11.99□□□□□ -0.49
CUX1-203ENST00000360264 PDS5BQ9NTI5 1447 aa11.98□□□□□ -0.49
CUX1-203ENST00000360264 CCDC70Q6NSX1 233 aa11.98□□□□□ -0.49
CUX1-203ENST00000360264 AMOTL1Q8IY63 956 aa11.98□□□□□ -0.49
CUX1-203ENST00000360264 GTF2E1P29083 439 aaPredicted RBP11.98□□□□□ -0.49
CUX1-203ENST00000360264 TPM1P09493 284 aa11.98□□□□□ -0.49
CUX1-203ENST00000360264 TCEAL9Q9UHQ7 104 aa11.98□□□□□ -0.49
CUX1-203ENST00000360264 SPRYD3Q8NCJ5 442 aa11.97□□□□□ -0.49
CUX1-203ENST00000360264 SIN3AQ96ST3 1273 aa11.97□□□□□ -0.49
CUX1-203ENST00000360264 EFCAB2Q5VUJ9 269 aa11.97□□□□□ -0.49
CUX1-203ENST00000360264 DDX11L8A8MPP1 907 aa11.96□□□□□ -0.49
CUX1-203ENST00000360264 CCDC9Q9Y3X0 531 aaKnown RBP11.96□□□□□ -0.49
CUX1-203ENST00000360264 ATP6V1DQ9Y5K8 247 aa11.96□□□□□ -0.49
CUX1-203ENST00000360264 PKD2Q13563 968 aa11.96□□□□□ -0.49
CUX1-203ENST00000360264 SETQ01105 290 aaPredicted RBP11.96□□□□□ -0.49
CUX1-203ENST00000360264 CUX2O14529 1486 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms