RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 ABCC5O15440 1437 aa29.68■■■□□ 2.34
CCDC88B-203ENST00000359902 PRG4Q92954 1404 aaPredicted RBP29.68■■■□□ 2.34
CCDC88B-203ENST00000359902 HIRIP3Q9BW71 556 aaPredicted RBP29.67■■■□□ 2.34
CCDC88B-203ENST00000359902 DNMT1P26358 1616 aaKnown RBP29.67■■■□□ 2.34
CCDC88B-203ENST00000359902 KDM5BQ9UGL1 1544 aa29.66■■■□□ 2.34
CCDC88B-203ENST00000359902 MPHOSPH9Q99550 1183 aa29.63■■■□□ 2.33
CCDC88B-203ENST00000359902 KCNH8Q96L42 1107 aa29.56■■■□□ 2.32
CCDC88B-203ENST00000359902 ADCY10Q96PN6 1610 aa29.56■■■□□ 2.32
CCDC88B-203ENST00000359902 GPATCH8Q9UKJ3 1502 aaKnown RBP29.56■■■□□ 2.32
CCDC88B-203ENST00000359902 CFDP1Q9UEE9 299 aaPredicted RBP29.55■■■□□ 2.32
CCDC88B-203ENST00000359902 KIF14Q15058 1648 aa29.54■■■□□ 2.32
CCDC88B-203ENST00000359902 ITSN2Q9NZM3 1697 aa29.53■■■□□ 2.32
CCDC88B-203ENST00000359902 CAMSAP2Q08AD1 1489 aa29.53■■■□□ 2.32
CCDC88B-203ENST00000359902 ABCA8O94911 1581 aa29.52■■■□□ 2.32
CCDC88B-203ENST00000359902 FOXD1Q16676 465 aa29.49■■■□□ 2.31
CCDC88B-203ENST00000359902 ATP10BO94823 1461 aa29.45■■■□□ 2.31
CCDC88B-203ENST00000359902 ANKRD30BQ9BXX2 1392 aa29.45■■■□□ 2.3
CCDC88B-203ENST00000359902 PLEKHD1A6NEE1 506 aa29.44■■■□□ 2.3
CCDC88B-203ENST00000359902 NCOA1Q15788 1441 aa29.43■■■□□ 2.3
CCDC88B-203ENST00000359902 ZNF777Q9ULD5 760 aaPredicted RBP29.43■■■□□ 2.3
CCDC88B-203ENST00000359902 L3MBTL2Q969R5 705 aa29.42■■■□□ 2.3
CCDC88B-203ENST00000359902 SLC4A1APQ9BWU0 796 aaKnown RBP29.39■■■□□ 2.3
CCDC88B-203ENST00000359902 ADGBQ8N7X0 1667 aa29.39■■■□□ 2.29
CCDC88B-203ENST00000359902 ADGRL2O95490 1459 aa29.39■■■□□ 2.29
CCDC88B-203ENST00000359902 ANP32CO43423 234 aa29.38■■■□□ 2.29
CCDC88B-203ENST00000359902 ABCC10Q5T3U5 1492 aa29.38■■■□□ 2.29
CCDC88B-203ENST00000359902 RPRD2Q5VT52 1461 aaKnown RBP29.38■■■□□ 2.29
CCDC88B-203ENST00000359902 CCER2I3L3R5 266 aa29.37■■■□□ 2.29
CCDC88B-203ENST00000359902 CROCC2H7BZ55 1655 aa29.36■■■□□ 2.29
CCDC88B-203ENST00000359902 CDC42BPAQ5VT25 1732 aa29.35■■■□□ 2.29
CCDC88B-203ENST00000359902 HSPA5P11021 654 aaKnown RBP29.34■■■□□ 2.29
CCDC88B-203ENST00000359902 PZPP20742 1482 aa29.33■■■□□ 2.29
CCDC88B-203ENST00000359902 PTPRGP23470 1445 aa29.33■■■□□ 2.29
CCDC88B-203ENST00000359902 ANKRD30AQ9BXX3 1397 aa29.31■■■□□ 2.28
CCDC88B-203ENST00000359902 EIF4G2P78344 907 aaKnown RBP eCLIP29.29■■■□□ 2.28
CCDC88B-203ENST00000359902 TEX14Q8IWB6 1497 aa29.29■■■□□ 2.28
CCDC88B-203ENST00000359902 CHD1O14646 1710 aa29.25■■■□□ 2.27
CCDC88B-203ENST00000359902 WASHC2AQ641Q2 1341 aa29.25■■■□□ 2.27
CCDC88B-203ENST00000359902 NBPF8Q3BBV2 869 aa29.23■■■□□ 2.27
CCDC88B-203ENST00000359902 SHANK2Q9UPX8 1470 aa29.23■■■□□ 2.27
CCDC88B-203ENST00000359902 ANKRD50Q9ULJ7 1429 aa29.22■■■□□ 2.27
CCDC88B-203ENST00000359902 C9orf84Q5VXU9 1444 aa29.2■■■□□ 2.26
CCDC88B-203ENST00000359902 KIAA1107Q9UPP5 1409 aa29.2■■■□□ 2.26
CCDC88B-203ENST00000359902 SUPT16HQ9Y5B9 1047 aaKnown RBP29.19■■■□□ 2.26
CCDC88B-203ENST00000359902 SHROOM2Q13796 1616 aa29.16■■■□□ 2.26
CCDC88B-203ENST00000359902 PKD2Q13563 968 aa29.15■■■□□ 2.26
CCDC88B-203ENST00000359902 TSPY4P0CV99 314 aa29.15■■■□□ 2.26
CCDC88B-203ENST00000359902 TSPY10P0CW01 314 aa29.15■■■□□ 2.26
CCDC88B-203ENST00000359902 HNRNPMP52272 730 aaKnown RBP eCLIP29.14■■■□□ 2.25
CCDC88B-203ENST00000359902 ARHGEF5Q12774 1597 aa29.12■■■□□ 2.25
CCDC88B-203ENST00000359902 MBD5Q9P267 1494 aa29.12■■■□□ 2.25
CCDC88B-203ENST00000359902 C11orf95C9JLR9 678 aaPredicted RBP29.1■■■□□ 2.25
CCDC88B-203ENST00000359902 MYT1Q01538 1121 aa29.1■■■□□ 2.25
CCDC88B-203ENST00000359902 SPATA31E1Q6ZUB1 1445 aa29.09■■■□□ 2.25
CCDC88B-203ENST00000359902 NUP155O75694 1391 aa29.08■■■□□ 2.25
CCDC88B-203ENST00000359902 CDC42BPBQ9Y5S2 1711 aa29.08■■■□□ 2.25
CCDC88B-203ENST00000359902 PREX2Q70Z35 1606 aa29.07■■■□□ 2.24
CCDC88B-203ENST00000359902 CCDC7Q96M83 1385 aa29.07■■■□□ 2.24
CCDC88B-203ENST00000359902 SAMD9LQ8IVG5 1584 aa29.06■■■□□ 2.24
CCDC88B-203ENST00000359902 KIF15Q9NS87 1388 aa29.05■■■□□ 2.24
CCDC88B-203ENST00000359902 CNTLNQ9NXG0 1405 aa29.05■■■□□ 2.24
CCDC88B-203ENST00000359902 KDM5DQ9BY66 1539 aa29.04■■■□□ 2.24
CCDC88B-203ENST00000359902 ERCC6L2Q5T890 1561 aa29.03■■■□□ 2.24
CCDC88B-203ENST00000359902 CCDC141Q6ZP82 1450 aa29.02■■■□□ 2.24
CCDC88B-203ENST00000359902 RSPH4AQ5TD94 716 aa29.02■■■□□ 2.24
CCDC88B-203ENST00000359902 ABCC2Q92887 1545 aa28.99■■■□□ 2.23
CCDC88B-203ENST00000359902 TTC37Q6PGP7 1564 aa28.97■■■□□ 2.23
CCDC88B-203ENST00000359902 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.96■■■□□ 2.23
CCDC88B-203ENST00000359902 KIF7Q2M1P5 1343 aa28.94■■■□□ 2.22
CCDC88B-203ENST00000359902 POLR1AO95602 1720 aaPredicted RBP28.92■■■□□ 2.22
CCDC88B-203ENST00000359902 ARHGAP5Q13017 1502 aa28.92■■■□□ 2.22
CCDC88B-203ENST00000359902 SYCP2Q9BX26 1530 aa28.91■■■□□ 2.22
CCDC88B-203ENST00000359902 UHRF1BP1Q6BDS2 1440 aa28.9■■■□□ 2.22
CCDC88B-203ENST00000359902 ZNF326Q5BKZ1 582 aaKnown RBP28.89■■■□□ 2.22
CCDC88B-203ENST00000359902 MAST1Q9Y2H9 1570 aa28.87■■■□□ 2.21
CCDC88B-203ENST00000359902 PRKRIP1Q9H875 184 aaPredicted RBP28.87■■■□□ 2.21
CCDC88B-203ENST00000359902 CLASP1Q7Z460 1538 aa28.87■■■□□ 2.21
CCDC88B-203ENST00000359902 USP47Q96K76 1375 aa28.86■■■□□ 2.21
CCDC88B-203ENST00000359902 ARHGEF12Q9NZN5 1544 aa28.86■■■□□ 2.21
CCDC88B-203ENST00000359902 MYO5CQ9NQX4 1742 aa28.85■■■□□ 2.21
CCDC88B-203ENST00000359902 FAM135AQ9P2D6 1515 aa28.84■■■□□ 2.21
CCDC88B-203ENST00000359902 PLEKHH2Q8IVE3 1493 aa28.82■■■□□ 2.2
CCDC88B-203ENST00000359902 FKBP8Q14318 412 aa28.82■■■□□ 2.2
CCDC88B-203ENST00000359902 CCDC184Q52MB2 194 aa28.82■■■□□ 2.2
CCDC88B-203ENST00000359902 RALGAPBQ86X10 1494 aa28.81■■■□□ 2.2
CCDC88B-203ENST00000359902 KDM5CP41229 1560 aa28.81■■■□□ 2.2
CCDC88B-203ENST00000359902 UHRF1BP1LA0JNW5 1464 aa28.81■■■□□ 2.2
CCDC88B-203ENST00000359902 HNRNPUQ00839 825 aaKnown RBP eCLIP28.81■■■□□ 2.2
CCDC88B-203ENST00000359902 BCORL1Q5H9F3 1711 aa28.79■■■□□ 2.2
CCDC88B-203ENST00000359902 ZCCHC11Q5TAX3 1644 aaKnown RBP28.79■■■□□ 2.2
CCDC88B-203ENST00000359902 PLCH2O75038 1416 aa28.77■■■□□ 2.2
CCDC88B-203ENST00000359902 UNC13BO14795 1591 aa28.76■■■□□ 2.19
CCDC88B-203ENST00000359902 PLXNC1O60486 1568 aa28.76■■■□□ 2.19
CCDC88B-203ENST00000359902 DCAF11Q8TEB1 546 aa28.74■■■□□ 2.19
CCDC88B-203ENST00000359902 KDM2AQ9Y2K7 1162 aa28.74■■■□□ 2.19
CCDC88B-203ENST00000359902 ARID4BQ4LE39 1312 aaPredicted RBP28.74■■■□□ 2.19
CCDC88B-203ENST00000359902 CARD11Q9BXL7 1154 aa28.72■■■□□ 2.19
CCDC88B-203ENST00000359902 NEFLP07196 543 aa28.71■■■□□ 2.19
CCDC88B-203ENST00000359902 EFCAB2Q5VUJ9 269 aa28.7■■■□□ 2.19
CCDC88B-203ENST00000359902 BCANQ96GW7 911 aa28.7■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms