RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 SAFB2Q14151 953 aaKnown RBP eCLIP20.3■□□□□ 0.84
COL18A1-203ENST00000359759 PRM3Q9NNZ6 103 aa20.3■□□□□ 0.84
COL18A1-203ENST00000359759 KIAA1211Q6ZU35 1233 aa20.29■□□□□ 0.84
COL18A1-203ENST00000359759 CCDC180Q9P1Z9 1646 aa20.28■□□□□ 0.84
COL18A1-203ENST00000359759 A0A0U1RQG5 324 aaPredicted RBP20.28■□□□□ 0.84
COL18A1-203ENST00000359759 ANO8Q9HCE9 1232 aaPredicted RBP20.27■□□□□ 0.84
COL18A1-203ENST00000359759 MFAP1P55081 439 aaKnown RBP20.26■□□□□ 0.83
COL18A1-203ENST00000359759 TMF1P82094 1093 aa20.26■□□□□ 0.83
COL18A1-203ENST00000359759 CREBRFQ8IUR6 639 aa20.26■□□□□ 0.83
COL18A1-203ENST00000359759 NOL8Q76FK4 1167 aaKnown RBP20.25■□□□□ 0.83
COL18A1-203ENST00000359759 GOLGA6L3A6NEY3 463 aa20.25■□□□□ 0.83
COL18A1-203ENST00000359759 DCAF11Q8TEB1 546 aa20.25■□□□□ 0.83
COL18A1-203ENST00000359759 MORC1Q86VD1 984 aa20.25■□□□□ 0.83
COL18A1-203ENST00000359759 ITPRIPQ8IWB1 547 aa20.25■□□□□ 0.83
COL18A1-203ENST00000359759 SRPK2P78362 688 aaKnown RBP20.24■□□□□ 0.83
COL18A1-203ENST00000359759 GOLGA3Q08378 1498 aa20.22■□□□□ 0.83
COL18A1-203ENST00000359759 RTF1Q92541 710 aaKnown RBP20.22■□□□□ 0.83
COL18A1-203ENST00000359759 GOLGA6L1Q8N7Z2 621 aa20.22■□□□□ 0.83
COL18A1-203ENST00000359759 PTMSP20962 102 aa20.21■□□□□ 0.83
COL18A1-203ENST00000359759 ZNF330Q9Y3S2 320 aaPredicted RBP20.21■□□□□ 0.83
COL18A1-203ENST00000359759 FOXD4L5Q5VV16 416 aaPredicted RBP20.2■□□□□ 0.82
COL18A1-203ENST00000359759 FOXD4L4Q8WXT5 416 aaPredicted RBP20.2■□□□□ 0.82
COL18A1-203ENST00000359759 TPM4P67936 248 aa20.19■□□□□ 0.82
COL18A1-203ENST00000359759 SYAP1Q96A49 352 aaPredicted RBP20.18■□□□□ 0.82
COL18A1-203ENST00000359759 CFAP44Q96MT7 982 aa20.16■□□□□ 0.82
COL18A1-203ENST00000359759 RCAN3Q9UKA8 241 aa20.15■□□□□ 0.82
COL18A1-203ENST00000359759 TRIM6-TRIM34B2RNG4 842 aa20.15■□□□□ 0.82
COL18A1-203ENST00000359759 HTATSF1O43719 755 aaKnown RBP20.13■□□□□ 0.81
COL18A1-203ENST00000359759 HSPA5P11021 654 aaKnown RBP20.13■□□□□ 0.81
COL18A1-203ENST00000359759 STK26Q9P289 416 aa20.13■□□□□ 0.81
COL18A1-203ENST00000359759 RWDD1Q9H446 243 aaPredicted RBP20.12■□□□□ 0.81
COL18A1-203ENST00000359759 IPO8O15397 1037 aaKnown RBP20.12■□□□□ 0.81
COL18A1-203ENST00000359759 CHMP3Q9Y3E7 222 aa20.11■□□□□ 0.81
COL18A1-203ENST00000359759 CALD1Q05682 793 aaKnown RBP20.11■□□□□ 0.81
COL18A1-203ENST00000359759 RASSF8Q8NHQ8 419 aa20.1■□□□□ 0.81
COL18A1-203ENST00000359759 MLECQ14165 292 aa20.09■□□□□ 0.81
COL18A1-203ENST00000359759 TSHZ2Q9NRE2 1034 aa20.09■□□□□ 0.81
COL18A1-203ENST00000359759 IPO9Q96P70 1041 aaKnown RBP20.08■□□□□ 0.81
COL18A1-203ENST00000359759 KTN1Q86UP2 1357 aaKnown RBP20.08■□□□□ 0.81
COL18A1-203ENST00000359759 TCERG1O14776 1098 aaKnown RBP20.08■□□□□ 0.81
COL18A1-203ENST00000359759 HSP90AA2PQ14568 343 aaPredicted RBP20.08■□□□□ 0.81
COL18A1-203ENST00000359759 PATL2C9JE40 543 aaKnown RBP20.08■□□□□ 0.8
COL18A1-203ENST00000359759 RB1CC1Q8TDY2 1594 aa20.07■□□□□ 0.8
COL18A1-203ENST00000359759 CCER2I3L3R5 266 aa20.07■□□□□ 0.8
COL18A1-203ENST00000359759 PAK3O75914 559 aaPredicted RBP20.07■□□□□ 0.8
COL18A1-203ENST00000359759 U2AF1L5P0DN76 240 aaPredicted RBP20.06■□□□□ 0.8
COL18A1-203ENST00000359759 U2AF1Q01081 240 aaKnown RBP eCLIP20.06■□□□□ 0.82e-9■■■□□ 17.5
COL18A1-203ENST00000359759 FOXD1Q16676 465 aa20.06■□□□□ 0.8
COL18A1-203ENST00000359759 GORABQ5T7V8 394 aa20.06■□□□□ 0.8
COL18A1-203ENST00000359759 FOXD4L6Q3SYB3 417 aaPredicted RBP20.03■□□□□ 0.8
COL18A1-203ENST00000359759 FOXD4L3Q6VB84 417 aaPredicted RBP20.03■□□□□ 0.8
COL18A1-203ENST00000359759 PMFBP1Q8TBY8 1022 aa20.03■□□□□ 0.8
COL18A1-203ENST00000359759 CCDC146Q8IYE0 955 aa20.03■□□□□ 0.8
COL18A1-203ENST00000359759 CLUAP1Q96AJ1 413 aa20.03■□□□□ 0.8
COL18A1-203ENST00000359759 PES1O00541 588 aaKnown RBP20.03■□□□□ 0.8
COL18A1-203ENST00000359759 CCAR2Q8N163 923 aaKnown RBP20.03■□□□□ 0.8
COL18A1-203ENST00000359759 FBXO3Q9UK99 471 aa20.03■□□□□ 0.8
COL18A1-203ENST00000359759 SLC4A10Q6U841 1118 aa20.02■□□□□ 0.8
COL18A1-203ENST00000359759 SMC4Q9NTJ3 1288 aa20.01■□□□□ 0.79
COL18A1-203ENST00000359759 VSIG10Q8N0Z9 540 aa20.01■□□□□ 0.79
COL18A1-203ENST00000359759 SLC4A3P48751 1232 aa20.01■□□□□ 0.79
COL18A1-203ENST00000359759 TPM3P06753 285 aa20■□□□□ 0.79
COL18A1-203ENST00000359759 CSPP1Q1MSJ5 1256 aa20■□□□□ 0.79
COL18A1-203ENST00000359759 SETQ01105 290 aaPredicted RBP20■□□□□ 0.79
COL18A1-203ENST00000359759 GPATCH3Q96I76 525 aa20■□□□□ 0.79
COL18A1-203ENST00000359759 TAF7LQ5H9L4 462 aa19.99■□□□□ 0.79
COL18A1-203ENST00000359759 HDGFL2Q7Z4V5 671 aaPredicted RBP19.99■□□□□ 0.79
COL18A1-203ENST00000359759 CSB-PGBD3P0DP91 1061 aa19.99■□□□□ 0.79
COL18A1-203ENST00000359759 VPS53Q5VIR6 699 aa19.98■□□□□ 0.79
COL18A1-203ENST00000359759 CCDC9Q9Y3X0 531 aaKnown RBP19.98■□□□□ 0.79
COL18A1-203ENST00000359759 TOMM22Q9NS69 142 aa19.97■□□□□ 0.79
COL18A1-203ENST00000359759 KANK1Q14678 1352 aa19.97■□□□□ 0.79
COL18A1-203ENST00000359759 CCNB3Q8WWL7 1395 aa19.97■□□□□ 0.79
COL18A1-203ENST00000359759 WWC1Q8IX03 1113 aa19.96■□□□□ 0.79
COL18A1-203ENST00000359759 CEP89Q96ST8 783 aa19.96■□□□□ 0.79
COL18A1-203ENST00000359759 PHF14O94880 888 aa19.95■□□□□ 0.78
COL18A1-203ENST00000359759 ZNF771Q7L3S4 317 aaPredicted RBP19.95■□□□□ 0.78
COL18A1-203ENST00000359759 SF3A1Q15459 793 aaKnown RBP19.94■□□□□ 0.78
COL18A1-203ENST00000359759 ZNF592Q92610 1267 aa19.94■□□□□ 0.78
COL18A1-203ENST00000359759 CCDC34Q96HJ3 373 aa19.94■□□□□ 0.78
COL18A1-203ENST00000359759 TPD52L1Q16890 204 aaPredicted RBP19.93■□□□□ 0.78
COL18A1-203ENST00000359759 KIF16BQ96L93 1317 aa19.93■□□□□ 0.78
COL18A1-203ENST00000359759 ROCK2O75116 1388 aaKnown RBP19.93■□□□□ 0.78
COL18A1-203ENST00000359759 STK31Q9BXU1 1019 aa19.93■□□□□ 0.78
COL18A1-203ENST00000359759 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.92■□□□□ 0.78
COL18A1-203ENST00000359759 MARCH6O60337 910 aa19.91■□□□□ 0.78
COL18A1-203ENST00000359759 EIF4G1Q04637 1599 aaKnown RBP19.91■□□□□ 0.78
COL18A1-203ENST00000359759 ST18O60284 1047 aa19.9■□□□□ 0.78
COL18A1-203ENST00000359759 H3BQV1 296 aa19.9■□□□□ 0.78
COL18A1-203ENST00000359759 IFFO2Q5TF58 517 aa19.9■□□□□ 0.78
COL18A1-203ENST00000359759 TIMELESSQ9UNS1 1208 aa19.9■□□□□ 0.78
COL18A1-203ENST00000359759 RSPH6AQ9H0K4 717 aa19.89■□□□□ 0.77
COL18A1-203ENST00000359759 TNIKQ9UKE5 1360 aa19.88■□□□□ 0.77
COL18A1-203ENST00000359759 DDX11L8A8MPP1 907 aa19.88■□□□□ 0.77
COL18A1-203ENST00000359759 SPAG9O60271 1321 aaKnown RBP19.88■□□□□ 0.77
COL18A1-203ENST00000359759 RILPL2Q969X0 211 aa19.88■□□□□ 0.77
COL18A1-203ENST00000359759 PKD2Q13563 968 aa19.87■□□□□ 0.77
COL18A1-203ENST00000359759 CEP164Q9UPV0 1460 aa19.87■□□□□ 0.77
COL18A1-203ENST00000359759 HMMRO75330 724 aa19.87■□□□□ 0.77
COL18A1-203ENST00000359759 EEA1Q15075 1411 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms