RNA–Protein interactions for RNA: ENST00000358730.6

RFX3-202, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 2,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-202ENST00000358730 ABCC5O15440 1437 aa12.03□□□□□ -0.48
RFX3-202ENST00000358730 WASHC2AQ641Q2 1341 aa12.02□□□□□ -0.49
RFX3-202ENST00000358730 NEFLP07196 543 aa12.01□□□□□ -0.49
RFX3-202ENST00000358730 ZNF644Q9H582 1327 aaPredicted RBP12.01□□□□□ -0.49
RFX3-202ENST00000358730 EIF4G2P78344 907 aaKnown RBP eCLIP12.01□□□□□ -0.49
RFX3-202ENST00000358730 CDK11AQ9UQ88 783 aaPredicted RBP12.01□□□□□ -0.49
RFX3-202ENST00000358730 MYT1Q01538 1121 aa12□□□□□ -0.49
RFX3-202ENST00000358730 L3MBTL2Q969R5 705 aa12□□□□□ -0.49
RFX3-202ENST00000358730 TSHZ2Q9NRE2 1034 aa12□□□□□ -0.49
RFX3-202ENST00000358730 ITSN2Q9NZM3 1697 aa12□□□□□ -0.49
RFX3-202ENST00000358730 RPRD2Q5VT52 1461 aaKnown RBP11.99□□□□□ -0.49
RFX3-202ENST00000358730 MAGI1Q96QZ7 1491 aaPredicted RBP11.98□□□□□ -0.49
RFX3-202ENST00000358730 CEP170Q5SW79 1584 aa11.98□□□□□ -0.49
RFX3-202ENST00000358730 TROQ12816 1431 aaPredicted RBP11.98□□□□□ -0.49
RFX3-202ENST00000358730 ANKRD30BQ9BXX2 1392 aa11.98□□□□□ -0.49
RFX3-202ENST00000358730 ERCC6Q03468 1493 aa11.98□□□□□ -0.49
RFX3-202ENST00000358730 CAMSAP2Q08AD1 1489 aa11.98□□□□□ -0.49
RFX3-202ENST00000358730 TEX14Q8IWB6 1497 aa11.98□□□□□ -0.49
RFX3-202ENST00000358730 PRG4Q92954 1404 aaPredicted RBP11.98□□□□□ -0.49
RFX3-202ENST00000358730 CNTLNQ9NXG0 1405 aa11.97□□□□□ -0.49
RFX3-202ENST00000358730 PLB1Q6P1J6 1458 aa11.97□□□□□ -0.49
RFX3-202ENST00000358730 ADGBQ8N7X0 1667 aa11.97□□□□□ -0.49
RFX3-202ENST00000358730 SLC4A1APQ9BWU0 796 aaKnown RBP11.97□□□□□ -0.49
RFX3-202ENST00000358730 KIF14Q15058 1648 aa11.96□□□□□ -0.49
RFX3-202ENST00000358730 SYNJ2O15056 1496 aa11.96□□□□□ -0.5
RFX3-202ENST00000358730 CHMP7Q8WUX9 453 aaPredicted RBP11.95□□□□□ -0.5
RFX3-202ENST00000358730 ADCY10Q96PN6 1610 aa11.95□□□□□ -0.5
RFX3-202ENST00000358730 HNRNPUQ00839 825 aaKnown RBP eCLIP11.95□□□□□ -0.5
RFX3-202ENST00000358730 NCOA1Q15788 1441 aa11.95□□□□□ -0.5
RFX3-202ENST00000358730 CFDP1Q9UEE9 299 aaPredicted RBP11.95□□□□□ -0.5
RFX3-202ENST00000358730 CROCC2H7BZ55 1655 aa11.94□□□□□ -0.5
RFX3-202ENST00000358730 GPATCH8Q9UKJ3 1502 aaKnown RBP11.94□□□□□ -0.5
RFX3-202ENST00000358730 CCDC7Q96M83 1385 aa11.93□□□□□ -0.5
RFX3-202ENST00000358730 PZPP20742 1482 aa11.93□□□□□ -0.5
RFX3-202ENST00000358730 FBLN2P98095 1184 aa11.93□□□□□ -0.5
RFX3-202ENST00000358730 NBPF8Q3BBV2 869 aa11.93□□□□□ -0.5
RFX3-202ENST00000358730 CARMIL2Q6F5E8 1435 aa11.92□□□□□ -0.5
RFX3-202ENST00000358730 ZNF777Q9ULD5 760 aaPredicted RBP11.92□□□□□ -0.5
RFX3-202ENST00000358730 POLR1AO95602 1720 aaPredicted RBP11.92□□□□□ -0.5
RFX3-202ENST00000358730 C11orf95C9JLR9 678 aaPredicted RBP11.91□□□□□ -0.5
RFX3-202ENST00000358730 ADGRL2O95490 1459 aa11.91□□□□□ -0.5
RFX3-202ENST00000358730 NUP160Q12769 1436 aa11.9□□□□□ -0.5
RFX3-202ENST00000358730 SPATA31E1Q6ZUB1 1445 aa11.88□□□□□ -0.51
RFX3-202ENST00000358730 CDC42BPAQ5VT25 1732 aa11.88□□□□□ -0.51
RFX3-202ENST00000358730 KIAA1107Q9UPP5 1409 aa11.88□□□□□ -0.51
RFX3-202ENST00000358730 ANKRD30AQ9BXX3 1397 aa11.88□□□□□ -0.51
RFX3-202ENST00000358730 JPH4Q96JJ6 628 aa11.88□□□□□ -0.51
RFX3-202ENST00000358730 PRKRIP1Q9H875 184 aaPredicted RBP11.88□□□□□ -0.51
RFX3-202ENST00000358730 KIF7Q2M1P5 1343 aa11.87□□□□□ -0.51
RFX3-202ENST00000358730 MBD5Q9P267 1494 aa11.87□□□□□ -0.51
RFX3-202ENST00000358730 CCDC184Q52MB2 194 aa11.87□□□□□ -0.51
RFX3-202ENST00000358730 ABCA8O94911 1581 aa11.86□□□□□ -0.51
RFX3-202ENST00000358730 ANKRD50Q9ULJ7 1429 aa11.86□□□□□ -0.51
RFX3-202ENST00000358730 PKD2Q13563 968 aa11.85□□□□□ -0.51
RFX3-202ENST00000358730 MRS2Q9HD23 443 aa11.85□□□□□ -0.51
RFX3-202ENST00000358730 PLEKHD1A6NEE1 506 aa11.84□□□□□ -0.51
RFX3-202ENST00000358730 SHANK2Q9UPX8 1470 aa11.84□□□□□ -0.51
RFX3-202ENST00000358730 C9orf84Q5VXU9 1444 aa11.84□□□□□ -0.51
RFX3-202ENST00000358730 ZNF326Q5BKZ1 582 aaKnown RBP11.84□□□□□ -0.51
RFX3-202ENST00000358730 ABCC10Q5T3U5 1492 aa11.84□□□□□ -0.51
RFX3-202ENST00000358730 FAM9BQ8IZU0 186 aa11.83□□□□□ -0.52
RFX3-202ENST00000358730 USP47Q96K76 1375 aa11.83□□□□□ -0.52
RFX3-202ENST00000358730 ATP10BO94823 1461 aa11.83□□□□□ -0.52
RFX3-202ENST00000358730 IRX6P78412 446 aaPredicted RBP11.82□□□□□ -0.52
RFX3-202ENST00000358730 BCORL1Q5H9F3 1711 aa11.81□□□□□ -0.52
RFX3-202ENST00000358730 KDM5CP41229 1560 aa11.81□□□□□ -0.52
RFX3-202ENST00000358730 NUP155O75694 1391 aa11.8□□□□□ -0.52
RFX3-202ENST00000358730 POLR3GLQ9BT43 218 aa11.79□□□□□ -0.52
RFX3-202ENST00000358730 ZBED9Q6R2W3 1325 aa11.79□□□□□ -0.52
RFX3-202ENST00000358730 KDM5DQ9BY66 1539 aa11.78□□□□□ -0.52
RFX3-202ENST00000358730 RBM19Q9Y4C8 960 aaKnown RBP11.78□□□□□ -0.52
RFX3-202ENST00000358730 KIF15Q9NS87 1388 aa11.78□□□□□ -0.52
RFX3-202ENST00000358730 TSPY4P0CV99 314 aa11.78□□□□□ -0.52
RFX3-202ENST00000358730 TSPY10P0CW01 314 aa11.78□□□□□ -0.52
RFX3-202ENST00000358730 RALGAPBQ86X10 1494 aa11.78□□□□□ -0.52
RFX3-202ENST00000358730 ARHGEF12Q9NZN5 1544 aa11.77□□□□□ -0.52
RFX3-202ENST00000358730 ARHGEF5Q12774 1597 aa11.77□□□□□ -0.53
RFX3-202ENST00000358730 DHX29Q7Z478 1369 aaKnown RBP11.77□□□□□ -0.53
RFX3-202ENST00000358730 UHRF1BP1Q6BDS2 1440 aa11.76□□□□□ -0.53
RFX3-202ENST00000358730 CNGB1Q14028 1251 aaPredicted RBP11.76□□□□□ -0.53
RFX3-202ENST00000358730 PREX2Q70Z35 1606 aa11.75□□□□□ -0.53
RFX3-202ENST00000358730 HNRNPMP52272 730 aaKnown RBP eCLIP11.75□□□□□ -0.53
RFX3-202ENST00000358730 SAMD9LQ8IVG5 1584 aa11.75□□□□□ -0.53
RFX3-202ENST00000358730 PTPRGP23470 1445 aa11.75□□□□□ -0.53
RFX3-202ENST00000358730 CDC42BPBQ9Y5S2 1711 aa11.75□□□□□ -0.53
RFX3-202ENST00000358730 CCDC141Q6ZP82 1450 aa11.74□□□□□ -0.53
RFX3-202ENST00000358730 ANP32EQ9BTT0 268 aa11.74□□□□□ -0.53
RFX3-202ENST00000358730 ERICH6BQ5W0A0 696 aa11.73□□□□□ -0.53
RFX3-202ENST00000358730 CARD11Q9BXL7 1154 aa11.73□□□□□ -0.53
RFX3-202ENST00000358730 ARID4BQ4LE39 1312 aaPredicted RBP11.73□□□□□ -0.53
RFX3-202ENST00000358730 ROCK2O75116 1388 aaKnown RBP11.72□□□□□ -0.53
RFX3-202ENST00000358730 FAM135AQ9P2D6 1515 aa11.72□□□□□ -0.53
RFX3-202ENST00000358730 KDM2AQ9Y2K7 1162 aa11.71□□□□□ -0.53
RFX3-202ENST00000358730 PPP4R2Q9NY27 417 aa11.71□□□□□ -0.54
RFX3-202ENST00000358730 CHD1O14646 1710 aa11.71□□□□□ -0.54
RFX3-202ENST00000358730 SYCP2Q9BX26 1530 aa11.7□□□□□ -0.54
RFX3-202ENST00000358730 DCAF11Q8TEB1 546 aa11.7□□□□□ -0.54
RFX3-202ENST00000358730 TTC37Q6PGP7 1564 aa11.7□□□□□ -0.54
RFX3-202ENST00000358730 ARHGAP5Q13017 1502 aa11.69□□□□□ -0.54
RFX3-202ENST00000358730 ST20-MTHFSA0A0A6YYL1 179 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms