RNA–Protein interactions for RNA: ENST00000357890.9

RNF40-202, Transcript of ring finger protein 40, humanhuman

TSL 2 BASIC

Gene RNF40, Length 3,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-202ENST00000357890 IL27Q8NEV9 243 aa13.5□□□□□ -0.25
RNF40-202ENST00000357890 SLC4A1APQ9BWU0 796 aaKnown RBP13.5□□□□□ -0.25
RNF40-202ENST00000357890 ZNF777Q9ULD5 760 aaPredicted RBP13.5□□□□□ -0.25
RNF40-202ENST00000357890 NEFMP07197 916 aa13.49□□□□□ -0.25
RNF40-202ENST00000357890 MPHOSPH9Q99550 1183 aa13.49□□□□□ -0.25
RNF40-202ENST00000357890 NAIPQ13075 1403 aa13.48□□□□□ -0.25
RNF40-202ENST00000357890 EHBP1L1Q8N3D4 1523 aa13.48□□□□□ -0.25
RNF40-202ENST00000357890 THOC2Q8NI27 1593 aaKnown RBP13.47□□□□□ -0.25
RNF40-202ENST00000357890 SNAPC4Q5SXM2 1469 aa13.46□□□□□ -0.25
RNF40-202ENST00000357890 CTTNBP2Q8WZ74 1663 aa13.46□□□□□ -0.25
RNF40-202ENST00000357890 ZNF608Q9ULD9 1512 aaPredicted RBP13.46□□□□□ -0.26
RNF40-202ENST00000357890 ARXQ96QS3 562 aa13.45□□□□□ -0.26
RNF40-202ENST00000357890 PTPRKQ15262 1439 aa13.45□□□□□ -0.26
RNF40-202ENST00000357890 TARBP1Q13395 1621 aaKnown RBP13.44□□□□□ -0.26
RNF40-202ENST00000357890 SUPT6HQ7KZ85 1726 aaKnown RBP13.44□□□□□ -0.26
RNF40-202ENST00000357890 PAK3O75914 559 aaPredicted RBP13.44□□□□□ -0.26
RNF40-202ENST00000357890 L3MBTL2Q969R5 705 aa13.44□□□□□ -0.26
RNF40-202ENST00000357890 CFDP1Q9UEE9 299 aaPredicted RBP13.44□□□□□ -0.26
RNF40-202ENST00000357890 MAGI1Q96QZ7 1491 aaPredicted RBP13.42□□□□□ -0.26
RNF40-202ENST00000357890 PTPN23Q9H3S7 1636 aa13.41□□□□□ -0.26
RNF40-202ENST00000357890 ABCA5Q8WWZ7 1642 aa13.41□□□□□ -0.26
RNF40-202ENST00000357890 MIA2Q96PC5 1412 aa13.39□□□□□ -0.27
RNF40-202ENST00000357890 HECW1Q76N89 1606 aa13.38□□□□□ -0.27
RNF40-202ENST00000357890 ERICH6BQ5W0A0 696 aa13.38□□□□□ -0.27
RNF40-202ENST00000357890 EPRSP07814 1512 aaKnown RBP13.38□□□□□ -0.27
RNF40-202ENST00000357890 TMC1Q8TDI8 760 aa13.37□□□□□ -0.27
RNF40-202ENST00000357890 SYNJ2O15056 1496 aa13.37□□□□□ -0.27
RNF40-202ENST00000357890 WASHC2AQ641Q2 1341 aa13.36□□□□□ -0.27
RNF40-202ENST00000357890 KDM2AQ9Y2K7 1162 aa13.36□□□□□ -0.27
RNF40-202ENST00000357890 SAMD9Q5K651 1589 aa13.36□□□□□ -0.27
RNF40-202ENST00000357890 PLEKHD1A6NEE1 506 aa13.35□□□□□ -0.27
RNF40-202ENST00000357890 UGGT2Q9NYU1 1516 aa13.35□□□□□ -0.27
RNF40-202ENST00000357890 IQGAP2Q13576 1575 aa13.35□□□□□ -0.27
RNF40-202ENST00000357890 EIF4G3O43432 1585 aaKnown RBP13.35□□□□□ -0.27
RNF40-202ENST00000357890 TSPY4P0CV99 314 aa13.35□□□□□ -0.27
RNF40-202ENST00000357890 TSPY10P0CW01 314 aa13.35□□□□□ -0.27
RNF40-202ENST00000357890 IPO9Q96P70 1041 aaKnown RBP13.34□□□□□ -0.27
RNF40-202ENST00000357890 ZNF644Q9H582 1327 aaPredicted RBP13.34□□□□□ -0.27
RNF40-202ENST00000357890 CDK13Q14004 1512 aaKnown RBP13.34□□□□□ -0.27
RNF40-202ENST00000357890 CARMIL2Q6F5E8 1435 aa13.33□□□□□ -0.28
RNF40-202ENST00000357890 PRKRIP1Q9H875 184 aaPredicted RBP13.33□□□□□ -0.28
RNF40-202ENST00000357890 JPH4Q96JJ6 628 aa13.32□□□□□ -0.28
RNF40-202ENST00000357890 GRIN2AQ12879 1464 aa13.32□□□□□ -0.28
RNF40-202ENST00000357890 CCDC184Q52MB2 194 aa13.32□□□□□ -0.28
RNF40-202ENST00000357890 ADAMTS12P58397 1594 aa13.32□□□□□ -0.28
RNF40-202ENST00000357890 GLIPR1L2Q4G1C9 344 aa13.32□□□□□ -0.28
RNF40-202ENST00000357890 PBRM1Q86U86 1689 aa13.31□□□□□ -0.28
RNF40-202ENST00000357890 AKNAQ7Z591 1439 aa13.31□□□□□ -0.28
RNF40-202ENST00000357890 KIAA0586Q9BVV6 1533 aa13.31□□□□□ -0.28
RNF40-202ENST00000357890 PKD2Q13563 968 aa13.3□□□□□ -0.28
RNF40-202ENST00000357890 TCOF1Q13428 1488 aaKnown RBP13.29□□□□□ -0.28
RNF40-202ENST00000357890 CCDC7Q96M83 1385 aa13.29□□□□□ -0.28
RNF40-202ENST00000357890 CNTLNQ9NXG0 1405 aa13.28□□□□□ -0.28
RNF40-202ENST00000357890 DAPK1P53355 1430 aa13.28□□□□□ -0.28
RNF40-202ENST00000357890 ROCK1Q13464 1354 aa13.28□□□□□ -0.28
RNF40-202ENST00000357890 ANKRD30AQ9BXX3 1397 aa13.27□□□□□ -0.28
RNF40-202ENST00000357890 PPM1GO15355 546 aaPredicted RBP13.26□□□□□ -0.29
RNF40-202ENST00000357890 NBPF8Q3BBV2 869 aa13.26□□□□□ -0.29
RNF40-202ENST00000357890 MAGI3Q5TCQ9 1506 aa13.26□□□□□ -0.29
RNF40-202ENST00000357890 BRPF3Q9ULD4 1205 aa13.25□□□□□ -0.29
RNF40-202ENST00000357890 CARD11Q9BXL7 1154 aa13.25□□□□□ -0.29
RNF40-202ENST00000357890 ANKRD30BQ9BXX2 1392 aa13.24□□□□□ -0.29
RNF40-202ENST00000357890 ABCC5O15440 1437 aa13.24□□□□□ -0.29
RNF40-202ENST00000357890 OSCARQ8IYS5 282 aa13.24□□□□□ -0.29
RNF40-202ENST00000357890 KIF7Q2M1P5 1343 aa13.23□□□□□ -0.29
RNF40-202ENST00000357890 C11orf95C9JLR9 678 aaPredicted RBP13.23□□□□□ -0.29
RNF40-202ENST00000357890 NUP155O75694 1391 aa13.23□□□□□ -0.29
RNF40-202ENST00000357890 TROQ12816 1431 aaPredicted RBP13.22□□□□□ -0.29
RNF40-202ENST00000357890 PRG4Q92954 1404 aaPredicted RBP13.22□□□□□ -0.29
RNF40-202ENST00000357890 ZBED9Q6R2W3 1325 aa13.22□□□□□ -0.29
RNF40-202ENST00000357890 ARHGEF11O15085 1522 aa13.22□□□□□ -0.29
RNF40-202ENST00000357890 RGL3Q3MIN7 710 aa13.21□□□□□ -0.3
RNF40-202ENST00000357890 RPRD2Q5VT52 1461 aaKnown RBP13.2□□□□□ -0.3
RNF40-202ENST00000357890 SLC4A3P48751 1232 aa13.2□□□□□ -0.3
RNF40-202ENST00000357890 ARID4BQ4LE39 1312 aaPredicted RBP13.2□□□□□ -0.3
RNF40-202ENST00000357890 NAP1L5Q96NT1 182 aaPredicted RBP13.2□□□□□ -0.3
RNF40-202ENST00000357890 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.2□□□□□ -0.36e-7■■□□□ 13.6
RNF40-202ENST00000357890 NUP160Q12769 1436 aa13.19□□□□□ -0.3
RNF40-202ENST00000357890 USP47Q96K76 1375 aa13.19□□□□□ -0.3
RNF40-202ENST00000357890 DCAF11Q8TEB1 546 aa13.19□□□□□ -0.3
RNF40-202ENST00000357890 NCOA1Q15788 1441 aa13.18□□□□□ -0.3
RNF40-202ENST00000357890 NUP153P49790 1475 aaKnown RBP13.17□□□□□ -0.3
RNF40-202ENST00000357890 ANKRD50Q9ULJ7 1429 aa13.17□□□□□ -0.3
RNF40-202ENST00000357890 NUDCQ9Y266 331 aa13.17□□□□□ -0.3
RNF40-202ENST00000357890 KIAA1107Q9UPP5 1409 aa13.16□□□□□ -0.3
RNF40-202ENST00000357890 GCC2Q8IWJ2 1684 aa13.16□□□□□ -0.3
RNF40-202ENST00000357890 HNRNPMP52272 730 aaKnown RBP eCLIP13.16□□□□□ -0.3
RNF40-202ENST00000357890 PTPRGP23470 1445 aa13.15□□□□□ -0.3
RNF40-202ENST00000357890 VSIG10Q8N0Z9 540 aa13.15□□□□□ -0.3
RNF40-202ENST00000357890 CAMSAP2Q08AD1 1489 aa13.14□□□□□ -0.31
RNF40-202ENST00000357890 PLB1Q6P1J6 1458 aa13.14□□□□□ -0.31
RNF40-202ENST00000357890 LRRIQ1Q96JM4 1722 aa13.14□□□□□ -0.31
RNF40-202ENST00000357890 ROCK2O75116 1388 aaKnown RBP13.14□□□□□ -0.31
RNF40-202ENST00000357890 KIAA0556O60303 1618 aa13.13□□□□□ -0.31
RNF40-202ENST00000357890 DDRGK1Q96HY6 314 aa13.13□□□□□ -0.31
RNF40-202ENST00000357890 DISP1Q96F81 1524 aa13.13□□□□□ -0.31
RNF40-202ENST00000357890 NPM1P06748 294 aaKnown RBP eCLIP13.13□□□□□ -0.31
RNF40-202ENST00000357890 RAPGEF6Q8TEU7 1601 aa13.13□□□□□ -0.31
RNF40-202ENST00000357890 KDM6BO15054 1643 aa13.12□□□□□ -0.31
RNF40-202ENST00000357890 GSE1Q14687 1217 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms