RNA–Protein interactions for RNA: ENST00000349124.2

PTP4A3-202, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

TSL 1 (best) BASIC

Gene PTP4A3, Length 2,710 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-202ENST00000349124 ADAMTS12P58397 1594 aa25.1■■□□□ 1.61
PTP4A3-202ENST00000349124 PBRM1Q86U86 1689 aa25.09■■□□□ 1.61
PTP4A3-202ENST00000349124 FAM9BQ8IZU0 186 aa25.09■■□□□ 1.61
PTP4A3-202ENST00000349124 DAPK1P53355 1430 aa25.08■■□□□ 1.61
PTP4A3-202ENST00000349124 GCC2Q8IWJ2 1684 aa25.08■■□□□ 1.61
PTP4A3-202ENST00000349124 CNGB1Q14028 1251 aaPredicted RBP25.08■■□□□ 1.61
PTP4A3-202ENST00000349124 ANP32EQ9BTT0 268 aa25.06■■□□□ 1.6
PTP4A3-202ENST00000349124 PRKRIP1Q9H875 184 aaPredicted RBP25.06■■□□□ 1.6
PTP4A3-202ENST00000349124 CCDC7Q96M83 1385 aa25.06■■□□□ 1.6
PTP4A3-202ENST00000349124 ZNF777Q9ULD5 760 aaPredicted RBP25.05■■□□□ 1.6
PTP4A3-202ENST00000349124 CNTLNQ9NXG0 1405 aa25.03■■□□□ 1.6
PTP4A3-202ENST00000349124 DISP1Q96F81 1524 aa25.03■■□□□ 1.6
PTP4A3-202ENST00000349124 MRC2Q9UBG0 1479 aa25.03■■□□□ 1.6
PTP4A3-202ENST00000349124 NUP153P49790 1475 aaKnown RBP25.02■■□□□ 1.6
PTP4A3-202ENST00000349124 MRS2Q9HD23 443 aa25.01■■□□□ 1.59
PTP4A3-202ENST00000349124 NCOA1Q15788 1441 aa25.01■■□□□ 1.59
PTP4A3-202ENST00000349124 PRG4Q92954 1404 aaPredicted RBP25.01■■□□□ 1.59
PTP4A3-202ENST00000349124 KIF7Q2M1P5 1343 aa25■■□□□ 1.59
PTP4A3-202ENST00000349124 ROCK1Q13464 1354 aa24.99■■□□□ 1.59
PTP4A3-202ENST00000349124 CFDP1Q9UEE9 299 aaPredicted RBP24.99■■□□□ 1.59
PTP4A3-202ENST00000349124 RPRD2Q5VT52 1461 aaKnown RBP24.99■■□□□ 1.59
PTP4A3-202ENST00000349124 ZNF326Q5BKZ1 582 aaKnown RBP24.98■■□□□ 1.59
PTP4A3-202ENST00000349124 FBLN2P98095 1184 aa24.98■■□□□ 1.59
PTP4A3-202ENST00000349124 CDK11AQ9UQ88 783 aaPredicted RBP24.98■■□□□ 1.59
PTP4A3-202ENST00000349124 KIAA0586Q9BVV6 1533 aa24.97■■□□□ 1.59
PTP4A3-202ENST00000349124 POLR3GLQ9BT43 218 aa24.96■■□□□ 1.59
PTP4A3-202ENST00000349124 TEX14Q8IWB6 1497 aa24.94■■□□□ 1.58
PTP4A3-202ENST00000349124 SENP3-EIF4A1A0A087X0R7 540 aa24.92■■□□□ 1.58
PTP4A3-202ENST00000349124 SPATA31E1Q6ZUB1 1445 aa24.91■■□□□ 1.58
PTP4A3-202ENST00000349124 KIAA0556O60303 1618 aa24.91■■□□□ 1.58
PTP4A3-202ENST00000349124 IFT140Q96RY7 1462 aa24.9■■□□□ 1.58
PTP4A3-202ENST00000349124 CHMP7Q8WUX9 453 aaPredicted RBP24.9■■□□□ 1.58
PTP4A3-202ENST00000349124 PLB1Q6P1J6 1458 aa24.9■■□□□ 1.58
PTP4A3-202ENST00000349124 PKD2Q13563 968 aa24.89■■□□□ 1.57
PTP4A3-202ENST00000349124 DNMT1P26358 1616 aaKnown RBP24.88■■□□□ 1.57
PTP4A3-202ENST00000349124 PZPP20742 1482 aa24.87■■□□□ 1.57
PTP4A3-202ENST00000349124 GRIN2AQ12879 1464 aa24.87■■□□□ 1.57
PTP4A3-202ENST00000349124 RAPGEF6Q8TEU7 1601 aa24.84■■□□□ 1.57
PTP4A3-202ENST00000349124 TROQ12816 1431 aaPredicted RBP24.84■■□□□ 1.57
PTP4A3-202ENST00000349124 MSH5O43196 834 aa24.84■■□□□ 1.57
PTP4A3-202ENST00000349124 CAMSAP2Q08AD1 1489 aa24.83■■□□□ 1.56
PTP4A3-202ENST00000349124 GPATCH8Q9UKJ3 1502 aaKnown RBP24.82■■□□□ 1.56
PTP4A3-202ENST00000349124 B4GALNT3Q6L9W6 998 aa24.81■■□□□ 1.56
PTP4A3-202ENST00000349124 JPH4Q96JJ6 628 aa24.8■■□□□ 1.56
PTP4A3-202ENST00000349124 ZBED9Q6R2W3 1325 aa24.79■■□□□ 1.56
PTP4A3-202ENST00000349124 PPP4R2Q9NY27 417 aa24.77■■□□□ 1.56
PTP4A3-202ENST00000349124 USP47Q96K76 1375 aa24.76■■□□□ 1.55
PTP4A3-202ENST00000349124 KDM2AQ9Y2K7 1162 aa24.76■■□□□ 1.55
PTP4A3-202ENST00000349124 KIAA1107Q9UPP5 1409 aa24.75■■□□□ 1.55
PTP4A3-202ENST00000349124 KIF14Q15058 1648 aa24.74■■□□□ 1.55
PTP4A3-202ENST00000349124 DHX29Q7Z478 1369 aaKnown RBP24.74■■□□□ 1.55
PTP4A3-202ENST00000349124 EIF4G3O43432 1585 aaKnown RBP24.73■■□□□ 1.55
PTP4A3-202ENST00000349124 PLEKHD1A6NEE1 506 aa24.71■■□□□ 1.55
PTP4A3-202ENST00000349124 ANKRD30AQ9BXX3 1397 aa24.71■■□□□ 1.55
PTP4A3-202ENST00000349124 NUP155O75694 1391 aa24.71■■□□□ 1.55
PTP4A3-202ENST00000349124 ANKRD50Q9ULJ7 1429 aa24.7■■□□□ 1.55
PTP4A3-202ENST00000349124 CEP170Q5SW79 1584 aa24.69■■□□□ 1.54
PTP4A3-202ENST00000349124 HNRNPMP52272 730 aaKnown RBP eCLIP24.69■■□□□ 1.544e-8■■■■■ 28.3
PTP4A3-202ENST00000349124 MBD5Q9P267 1494 aa24.67■■□□□ 1.54
PTP4A3-202ENST00000349124 CARD11Q9BXL7 1154 aa24.67■■□□□ 1.54
PTP4A3-202ENST00000349124 ERICH6BQ5W0A0 696 aa24.66■■□□□ 1.54
PTP4A3-202ENST00000349124 BCORL1Q5H9F3 1711 aa24.65■■□□□ 1.54
PTP4A3-202ENST00000349124 ERCC6Q03468 1493 aa24.64■■□□□ 1.53
PTP4A3-202ENST00000349124 ST20-MTHFSA0A0A6YYL1 179 aa24.63■■□□□ 1.53
PTP4A3-202ENST00000349124 ADGRL2O95490 1459 aa24.63■■□□□ 1.53
PTP4A3-202ENST00000349124 TSPY4P0CV99 314 aa24.63■■□□□ 1.53
PTP4A3-202ENST00000349124 TSPY10P0CW01 314 aa24.63■■□□□ 1.53
PTP4A3-202ENST00000349124 DCAF11Q8TEB1 546 aa24.63■■□□□ 1.53
PTP4A3-202ENST00000349124 CARMIL2Q6F5E8 1435 aa24.62■■□□□ 1.53
PTP4A3-202ENST00000349124 SYNJ2O15056 1496 aa24.62■■□□□ 1.53
PTP4A3-202ENST00000349124 MAGI1Q96QZ7 1491 aaPredicted RBP24.6■■□□□ 1.53
PTP4A3-202ENST00000349124 ATP10BO94823 1461 aa24.59■■□□□ 1.53
PTP4A3-202ENST00000349124 FANCIQ9NVI1 1328 aa24.59■■□□□ 1.53
PTP4A3-202ENST00000349124 PNISRQ8TF01 805 aaKnown RBP24.58■■□□□ 1.53
PTP4A3-202ENST00000349124 C9orf84Q5VXU9 1444 aa24.58■■□□□ 1.53
PTP4A3-202ENST00000349124 TMC1Q8TDI8 760 aa24.57■■□□□ 1.52
PTP4A3-202ENST00000349124 NUDCQ9Y266 331 aa24.54■■□□□ 1.52
PTP4A3-202ENST00000349124 ITSN2Q9NZM3 1697 aa24.54■■□□□ 1.52
PTP4A3-202ENST00000349124 NUP160Q12769 1436 aa24.53■■□□□ 1.52
PTP4A3-202ENST00000349124 KIF15Q9NS87 1388 aa24.53■■□□□ 1.52
PTP4A3-202ENST00000349124 ABCC10Q5T3U5 1492 aa24.53■■□□□ 1.52
PTP4A3-202ENST00000349124 RGL3Q3MIN7 710 aa24.52■■□□□ 1.52
PTP4A3-202ENST00000349124 ADGBQ8N7X0 1667 aa24.52■■□□□ 1.52
PTP4A3-202ENST00000349124 SMG6Q86US8 1419 aaKnown RBP24.52■■□□□ 1.52
PTP4A3-202ENST00000349124 KDM5CP41229 1560 aa24.52■■□□□ 1.52
PTP4A3-202ENST00000349124 UHRF1BP1Q6BDS2 1440 aa24.5■■□□□ 1.51
PTP4A3-202ENST00000349124 SALL2Q9Y467 1007 aaPredicted RBP24.49■■□□□ 1.51
PTP4A3-202ENST00000349124 POLR1AO95602 1720 aaPredicted RBP24.49■■□□□ 1.51
PTP4A3-202ENST00000349124 ADCY10Q96PN6 1610 aa24.49■■□□□ 1.51
PTP4A3-202ENST00000349124 ARID4BQ4LE39 1312 aaPredicted RBP24.48■■□□□ 1.51
PTP4A3-202ENST00000349124 CROCC2H7BZ55 1655 aa24.48■■□□□ 1.51
PTP4A3-202ENST00000349124 NBPF1Q3BBV0 1214 aa24.47■■□□□ 1.51
PTP4A3-202ENST00000349124 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.47■■□□□ 1.51
PTP4A3-202ENST00000349124 RALGAPBQ86X10 1494 aa24.47■■□□□ 1.51
PTP4A3-202ENST00000349124 CDC42BPAQ5VT25 1732 aa24.45■■□□□ 1.5
PTP4A3-202ENST00000349124 ABCA8O94911 1581 aa24.44■■□□□ 1.5
PTP4A3-202ENST00000349124 ROCK2O75116 1388 aaKnown RBP24.44■■□□□ 1.5
PTP4A3-202ENST00000349124 ERICH6Q7L0X2 663 aa24.43■■□□□ 1.5
PTP4A3-202ENST00000349124 CCDC136Q96JN2 1154 aa24.42■■□□□ 1.5
PTP4A3-202ENST00000349124 RNF123Q5XPI4 1314 aa24.42■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms