RNA–Protein interactions for RNA: ENST00000347635.8

NUP50-201, Transcript of nucleoporin 50, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP50, Length 5,233 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-201ENST00000347635 LRRC9Q6ZRR7 1453 aa19.4■□□□□ 0.7
NUP50-201ENST00000347635 PHLDB1Q86UU1 1377 aa19.38■□□□□ 0.69
NUP50-201ENST00000347635 L3MBTL2Q969R5 705 aa19.38■□□□□ 0.69
NUP50-201ENST00000347635 PPM1GO15355 546 aaPredicted RBP19.37■□□□□ 0.69
NUP50-201ENST00000347635 PRXQ9BXM0 1461 aa19.37■□□□□ 0.69
NUP50-201ENST00000347635 EIF5BO60841 1220 aaKnown RBP19.36■□□□□ 0.69
NUP50-201ENST00000347635 DEKP35659 375 aaKnown RBP19.36■□□□□ 0.69
NUP50-201ENST00000347635 POLA1P09884 1462 aaPredicted RBP19.36■□□□□ 0.69
NUP50-201ENST00000347635 CUX1P39880 1505 aa19.36■□□□□ 0.69
NUP50-201ENST00000347635 LAS1LQ9Y4W2 734 aaKnown RBP19.32■□□□□ 0.68
NUP50-201ENST00000347635 KNSTRNQ9Y448 316 aa19.32■□□□□ 0.68
NUP50-201ENST00000347635 DCAF11Q8TEB1 546 aa19.31■□□□□ 0.68
NUP50-201ENST00000347635 PKD2Q13563 968 aa19.3■□□□□ 0.68
NUP50-201ENST00000347635 NUDCQ9Y266 331 aa19.3■□□□□ 0.68
NUP50-201ENST00000347635 FGD6Q6ZV73 1430 aa19.29■□□□□ 0.68
NUP50-201ENST00000347635 SPAG9O60271 1321 aaKnown RBP19.29■□□□□ 0.68
NUP50-201ENST00000347635 CC2D1BQ5T0F9 858 aaKnown RBP19.29■□□□□ 0.68
NUP50-201ENST00000347635 UACAQ9BZF9 1416 aa19.27■□□□□ 0.68
NUP50-201ENST00000347635 PRKRIP1Q9H875 184 aaPredicted RBP19.26■□□□□ 0.67
NUP50-201ENST00000347635 BECN1Q14457 450 aa19.25■□□□□ 0.67
NUP50-201ENST00000347635 FANCIQ9NVI1 1328 aa19.25■□□□□ 0.67
NUP50-201ENST00000347635 NUP155O75694 1391 aa19.24■□□□□ 0.67
NUP50-201ENST00000347635 GGT6Q6P531 493 aa19.24■□□□□ 0.67
NUP50-201ENST00000347635 EFCAB5A4FU69 1503 aa19.24■□□□□ 0.67
NUP50-201ENST00000347635 ABCA10Q8WWZ4 1543 aa19.24■□□□□ 0.67
NUP50-201ENST00000347635 HSP90AA1P07900 732 aaKnown RBP19.24■□□□□ 0.67
NUP50-201ENST00000347635 ZBED9Q6R2W3 1325 aa19.24■□□□□ 0.67
NUP50-201ENST00000347635 RALBP1Q15311 655 aa19.23■□□□□ 0.67
NUP50-201ENST00000347635 KTN1Q86UP2 1357 aaKnown RBP19.23■□□□□ 0.67
NUP50-201ENST00000347635 HNRNPMP52272 730 aaKnown RBP eCLIP19.23■□□□□ 0.67
NUP50-201ENST00000347635 CASKIN1Q8WXD9 1431 aa19.22■□□□□ 0.67
NUP50-201ENST00000347635 TIAM1Q13009 1591 aa19.22■□□□□ 0.67
NUP50-201ENST00000347635 C14orf37Q86TY3 774 aa19.21■□□□□ 0.67
NUP50-201ENST00000347635 RCAN3Q9UKA8 241 aa19.21■□□□□ 0.67
NUP50-201ENST00000347635 TMF1P82094 1093 aa19.2■□□□□ 0.66
NUP50-201ENST00000347635 MYOM3Q5VTT5 1437 aa19.2■□□□□ 0.66
NUP50-201ENST00000347635 POGKQ9P215 609 aa19.19■□□□□ 0.66
NUP50-201ENST00000347635 FYCO1Q9BQS8 1478 aa19.19■□□□□ 0.66
NUP50-201ENST00000347635 IPO9Q96P70 1041 aaKnown RBP19.19■□□□□ 0.66
NUP50-201ENST00000347635 ROCK2O75116 1388 aaKnown RBP19.18■□□□□ 0.66
NUP50-201ENST00000347635 TCERG1O14776 1098 aaKnown RBP19.18■□□□□ 0.66
NUP50-201ENST00000347635 CYB5RLQ6IPT4 315 aa19.18■□□□□ 0.66
NUP50-201ENST00000347635 ANP32BQ92688 251 aaKnown RBP19.18■□□□□ 0.66
NUP50-201ENST00000347635 MLECQ14165 292 aa19.17■□□□□ 0.66
NUP50-201ENST00000347635 DNAJC5BQ9UF47 199 aa19.17■□□□□ 0.66
NUP50-201ENST00000347635 SNAPC4Q5SXM2 1469 aa19.17■□□□□ 0.66
NUP50-201ENST00000347635 KIF3BO15066 747 aa19.17■□□□□ 0.66
NUP50-201ENST00000347635 ARXQ96QS3 562 aa19.17■□□□□ 0.66
NUP50-201ENST00000347635 RGS3P49796 1198 aa19.16■□□□□ 0.66
NUP50-201ENST00000347635 WDR97A6NE52 1622 aa19.16■□□□□ 0.66
NUP50-201ENST00000347635 CFAP53Q96M91 514 aa19.15■□□□□ 0.66
NUP50-201ENST00000347635 CNTLNQ9NXG0 1405 aa19.15■□□□□ 0.66
NUP50-201ENST00000347635 PRG4Q92954 1404 aaPredicted RBP19.14■□□□□ 0.65
NUP50-201ENST00000347635 SYNJ2O15056 1496 aa19.13■□□□□ 0.65
NUP50-201ENST00000347635 CCDC7Q96M83 1385 aa19.12■□□□□ 0.65
NUP50-201ENST00000347635 KIF15Q9NS87 1388 aa19.12■□□□□ 0.65
NUP50-201ENST00000347635 NCOA2Q15596 1464 aa19.12■□□□□ 0.65
NUP50-201ENST00000347635 RTN4Q9NQC3 1192 aaKnown RBP19.11■□□□□ 0.65
NUP50-201ENST00000347635 WASHC2AQ641Q2 1341 aa19.1■□□□□ 0.65
NUP50-201ENST00000347635 KIAA0586Q9BVV6 1533 aa19.1■□□□□ 0.65
NUP50-201ENST00000347635 CUL7Q14999 1698 aa19.08■□□□□ 0.65
NUP50-201ENST00000347635 MYBBP1AQ9BQG0 1328 aaKnown RBP19.08■□□□□ 0.64
NUP50-201ENST00000347635 WASHC2CQ9Y4E1 1318 aa19.08■□□□□ 0.64
NUP50-201ENST00000347635 PDE3BQ13370 1112 aa19.08■□□□□ 0.64
NUP50-201ENST00000347635 USP47Q96K76 1375 aa19.07■□□□□ 0.64
NUP50-201ENST00000347635 NLRP13Q86W25 1043 aa19.07■□□□□ 0.64
NUP50-201ENST00000347635 PRDM2Q13029 1718 aa19.06■□□□□ 0.64
NUP50-201ENST00000347635 MAGI1Q96QZ7 1491 aaPredicted RBP19.06■□□□□ 0.64
NUP50-201ENST00000347635 KIF7Q2M1P5 1343 aa19.04■□□□□ 0.64
NUP50-201ENST00000347635 HFM1A2PYH4 1435 aa19.04■□□□□ 0.64
NUP50-201ENST00000347635 NEUROD2Q15784 382 aa19.04■□□□□ 0.64
NUP50-201ENST00000347635 FRAT1Q92837 279 aaPredicted RBP19.03■□□□□ 0.64
NUP50-201ENST00000347635 GLIPR1L2Q4G1C9 344 aa19.03■□□□□ 0.64
NUP50-201ENST00000347635 SENP3Q9H4L4 574 aaPredicted RBP19.02■□□□□ 0.64
NUP50-201ENST00000347635 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.02■□□□□ 0.64
NUP50-201ENST00000347635 FTSJ3Q8IY81 847 aaKnown RBP19.01■□□□□ 0.63
NUP50-201ENST00000347635 MAP3K1Q13233 1512 aa19.01■□□□□ 0.63
NUP50-201ENST00000347635 URB2Q14146 1524 aaKnown RBP19.01■□□□□ 0.63
NUP50-201ENST00000347635 BIVM-ERCC5R4GMW8 1640 aa19■□□□□ 0.63
NUP50-201ENST00000347635 ST20-MTHFSA0A0A6YYL1 179 aa19■□□□□ 0.63
NUP50-201ENST00000347635 EIF3AQ14152 1382 aaKnown RBP19■□□□□ 0.63
NUP50-201ENST00000347635 RRP1P56182 461 aaKnown RBP19■□□□□ 0.63
NUP50-201ENST00000347635 MYH16Q9H6N6 1097 aa18.98■□□□□ 0.63
NUP50-201ENST00000347635 FAM69CQ0P6D2 419 aa18.97■□□□□ 0.63
NUP50-201ENST00000347635 HECW1Q76N89 1606 aa18.97■□□□□ 0.63
NUP50-201ENST00000347635 EHBP1L1Q8N3D4 1523 aa18.97■□□□□ 0.63
NUP50-201ENST00000347635 PCF11O94913 1555 aaKnown RBP18.97■□□□□ 0.63
NUP50-201ENST00000347635 EID1Q9Y6B2 187 aa18.96■□□□□ 0.63
NUP50-201ENST00000347635 EXOC6Q8TAG9 804 aa18.96■□□□□ 0.63
NUP50-201ENST00000347635 IQGAP2Q13576 1575 aa18.95■□□□□ 0.62
NUP50-201ENST00000347635 PLEKHH2Q8IVE3 1493 aa18.95■□□□□ 0.62
NUP50-201ENST00000347635 CCDC144AA2RUR9 1427 aa18.95■□□□□ 0.62
NUP50-201ENST00000347635 TNNT2P45379 298 aaPredicted RBP18.94■□□□□ 0.62
NUP50-201ENST00000347635 PNNQ9H307 717 aaKnown RBP18.94■□□□□ 0.62
NUP50-201ENST00000347635 HAP1P54257 671 aaPredicted RBP18.94■□□□□ 0.62
NUP50-201ENST00000347635 PDE4AP27815 886 aa18.94■□□□□ 0.62
NUP50-201ENST00000347635 TROQ12816 1431 aaPredicted RBP18.93■□□□□ 0.62
NUP50-201ENST00000347635 GRIN2AQ12879 1464 aa18.92■□□□□ 0.62
NUP50-201ENST00000347635 MIA2Q96PC5 1412 aa18.92■□□□□ 0.62
NUP50-201ENST00000347635 SRPK2P78362 688 aaKnown RBP18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms