RNA–Protein interactions for RNA: ENST00000347559.6

LMNA-201, Transcript of lamin A/C, humanhuman

TSL 5 BASIC

Gene LMNA, Length 3,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-201ENST00000347559 SKAP1Q86WV1 359 aa20.44■□□□□ 0.86
LMNA-201ENST00000347559 TMC1Q8TDI8 760 aa20.44■□□□□ 0.86
LMNA-201ENST00000347559 FRAT1Q92837 279 aaPredicted RBP20.42■□□□□ 0.86
LMNA-201ENST00000347559 MPHOSPH9Q99550 1183 aa20.42■□□□□ 0.86
LMNA-201ENST00000347559 RRP1P56182 461 aaKnown RBP20.41■□□□□ 0.86
LMNA-201ENST00000347559 NFKBIBQ15653 356 aa20.41■□□□□ 0.86
LMNA-201ENST00000347559 DAXXQ9UER7 740 aaPredicted RBP20.4■□□□□ 0.86
LMNA-201ENST00000347559 FYCO1Q9BQS8 1478 aa20.4■□□□□ 0.86
LMNA-201ENST00000347559 ZNF326Q5BKZ1 582 aaKnown RBP20.39■□□□□ 0.85
LMNA-201ENST00000347559 CASKIN1Q8WXD9 1431 aa20.39■□□□□ 0.85
LMNA-201ENST00000347559 PNISRQ8TF01 805 aaKnown RBP20.36■□□□□ 0.85
LMNA-201ENST00000347559 DDRGK1Q96HY6 314 aa20.36■□□□□ 0.85
LMNA-201ENST00000347559 RCAN3Q9UKA8 241 aa20.35■□□□□ 0.85
LMNA-201ENST00000347559 FGD5Q6ZNL6 1462 aa20.34■□□□□ 0.85
LMNA-201ENST00000347559 MS4A1P11836 297 aa20.34■□□□□ 0.85
LMNA-201ENST00000347559 DENND4BO75064 1496 aaPredicted RBP20.32■□□□□ 0.84
LMNA-201ENST00000347559 MYOM3Q5VTT5 1437 aa20.32■□□□□ 0.84
LMNA-201ENST00000347559 DHX29Q7Z478 1369 aaKnown RBP20.31■□□□□ 0.84
LMNA-201ENST00000347559 PLIN1O60240 522 aa20.31■□□□□ 0.84
LMNA-201ENST00000347559 CFTRP13569 1480 aa20.25■□□□□ 0.83
LMNA-201ENST00000347559 SPATA31E1Q6ZUB1 1445 aa20.25■□□□□ 0.83
LMNA-201ENST00000347559 FRAT2O75474 233 aaPredicted RBP20.25■□□□□ 0.83
LMNA-201ENST00000347559 RSPH6AQ9H0K4 717 aa20.24■□□□□ 0.83
LMNA-201ENST00000347559 SLC4A1APQ9BWU0 796 aaKnown RBP20.23■□□□□ 0.83
LMNA-201ENST00000347559 KDM6BO15054 1643 aa20.22■□□□□ 0.83
LMNA-201ENST00000347559 CDCA7LQ96GN5 454 aa20.21■□□□□ 0.83
LMNA-201ENST00000347559 ARID3CA6NKF2 412 aa20.21■□□□□ 0.83
LMNA-201ENST00000347559 DCAF11Q8TEB1 546 aa20.2■□□□□ 0.82
LMNA-201ENST00000347559 CRBNQ96SW2 442 aa20.2■□□□□ 0.82
LMNA-201ENST00000347559 USP47Q96K76 1375 aa20.18■□□□□ 0.82
LMNA-201ENST00000347559 FAM43AQ8N2R8 423 aa20.18■□□□□ 0.82
LMNA-201ENST00000347559 ANKRD30BQ9BXX2 1392 aa20.17■□□□□ 0.82
LMNA-201ENST00000347559 HECW1Q76N89 1606 aa20.17■□□□□ 0.82
LMNA-201ENST00000347559 EFCAB5A4FU69 1503 aa20.16■□□□□ 0.82
LMNA-201ENST00000347559 RPRD2Q5VT52 1461 aaKnown RBP20.16■□□□□ 0.82
LMNA-201ENST00000347559 SNAPC4Q5SXM2 1469 aa20.15■□□□□ 0.82
LMNA-201ENST00000347559 PKNOX2Q96KN3 472 aa20.14■□□□□ 0.82
LMNA-201ENST00000347559 TEX14Q8IWB6 1497 aa20.14■□□□□ 0.81
LMNA-201ENST00000347559 ABCA5Q8WWZ7 1642 aa20.13■□□□□ 0.81
LMNA-201ENST00000347559 ARXQ96QS3 562 aa20.12■□□□□ 0.81
LMNA-201ENST00000347559 MYBBP1AQ9BQG0 1328 aaKnown RBP20.11■□□□□ 0.81
LMNA-201ENST00000347559 LRPPRCP42704 1394 aaKnown RBP20.1■□□□□ 0.81
LMNA-201ENST00000347559 SUPT6HQ7KZ85 1726 aaKnown RBP20.1■□□□□ 0.81
LMNA-201ENST00000347559 RGS3P49796 1198 aa20.1■□□□□ 0.81
LMNA-201ENST00000347559 MIA2Q96PC5 1412 aa20.1■□□□□ 0.81
LMNA-201ENST00000347559 C20orf194Q5TEA3 1177 aa20.09■□□□□ 0.81
LMNA-201ENST00000347559 KIF15Q9NS87 1388 aa20.09■□□□□ 0.81
LMNA-201ENST00000347559 BRD4O60885 1362 aaPredicted RBP20.07■□□□□ 0.8
LMNA-201ENST00000347559 RAD54L2Q9Y4B4 1467 aa20.06■□□□□ 0.8
LMNA-201ENST00000347559 BCORL1Q5H9F3 1711 aa20.06■□□□□ 0.8
LMNA-201ENST00000347559 PDE3BQ13370 1112 aa20.06■□□□□ 0.8
LMNA-201ENST00000347559 FAM161AQ3B820 660 aa20.06■□□□□ 0.8
LMNA-201ENST00000347559 CARD11Q9BXL7 1154 aa20.06■□□□□ 0.8
LMNA-201ENST00000347559 POGKQ9P215 609 aa20.06■□□□□ 0.8
LMNA-201ENST00000347559 GCC2Q8IWJ2 1684 aa20.05■□□□□ 0.8
LMNA-201ENST00000347559 POLR1AO95602 1720 aaPredicted RBP20.05■□□□□ 0.8
LMNA-201ENST00000347559 RALBP1Q15311 655 aa20.05■□□□□ 0.8
LMNA-201ENST00000347559 HMGXB3Q12766 1538 aa20.04■□□□□ 0.8
LMNA-201ENST00000347559 EHBP1L1Q8N3D4 1523 aa20.04■□□□□ 0.8
LMNA-201ENST00000347559 RRAGDQ9NQL2 400 aaPredicted RBP20.04■□□□□ 0.8
LMNA-201ENST00000347559 UGGT2Q9NYU1 1516 aa20.03■□□□□ 0.8
LMNA-201ENST00000347559 KDM2AQ9Y2K7 1162 aa20.03■□□□□ 0.8
LMNA-201ENST00000347559 C8orf34Q49A92 452 aa20.02■□□□□ 0.8
LMNA-201ENST00000347559 ST20-MTHFSA0A0A6YYL1 179 aa20.02■□□□□ 0.79
LMNA-201ENST00000347559 GLIPR1L2Q4G1C9 344 aa20.02■□□□□ 0.79
LMNA-201ENST00000347559 VSIG10Q8N0Z9 540 aa20.02■□□□□ 0.79
LMNA-201ENST00000347559 LRRIQ1Q96JM4 1722 aa20.01■□□□□ 0.79
LMNA-201ENST00000347559 ROCK2O75116 1388 aaKnown RBP20.01■□□□□ 0.79
LMNA-201ENST00000347559 GRIN2BQ13224 1484 aa20■□□□□ 0.79
LMNA-201ENST00000347559 NLRP13Q86W25 1043 aa20■□□□□ 0.79
LMNA-201ENST00000347559 MAGI3Q5TCQ9 1506 aa20■□□□□ 0.79
LMNA-201ENST00000347559 NAP1L5Q96NT1 182 aaPredicted RBP20■□□□□ 0.79
LMNA-201ENST00000347559 ARID4BQ4LE39 1312 aaPredicted RBP19.99■□□□□ 0.79
LMNA-201ENST00000347559 KTN1Q86UP2 1357 aaKnown RBP19.99■□□□□ 0.79
LMNA-201ENST00000347559 SLKQ9H2G2 1235 aaPredicted RBP19.98■□□□□ 0.79
LMNA-201ENST00000347559 CENPQQ7L2Z9 268 aaPredicted RBP19.98■□□□□ 0.79
LMNA-201ENST00000347559 ZNF644Q9H582 1327 aaPredicted RBP19.98■□□□□ 0.79
LMNA-201ENST00000347559 TCOF1Q13428 1488 aaKnown RBP19.97■□□□□ 0.79
LMNA-201ENST00000347559 CC2D1BQ5T0F9 858 aaKnown RBP19.96■□□□□ 0.79
LMNA-201ENST00000347559 CADPSQ9ULU8 1353 aa19.96■□□□□ 0.79
LMNA-201ENST00000347559 KDM2BQ8NHM5 1336 aa19.96■□□□□ 0.79
LMNA-201ENST00000347559 PKD2Q13563 968 aa19.94■□□□□ 0.78
LMNA-201ENST00000347559 CTTNBP2Q8WZ74 1663 aa19.93■□□□□ 0.78
LMNA-201ENST00000347559 ZMYND15Q9H091 742 aa19.93■□□□□ 0.78
LMNA-201ENST00000347559 ARHGEF11O15085 1522 aa19.9■□□□□ 0.78
LMNA-201ENST00000347559 L1TD1Q5T7N2 865 aaKnown RBP19.89■□□□□ 0.77
LMNA-201ENST00000347559 PNNQ9H307 717 aaKnown RBP19.89■□□□□ 0.77
LMNA-201ENST00000347559 DAPK1P53355 1430 aa19.88■□□□□ 0.77
LMNA-201ENST00000347559 HSP90AA2PQ14568 343 aaPredicted RBP19.88■□□□□ 0.77
LMNA-201ENST00000347559 KDM5CP41229 1560 aa19.87■□□□□ 0.77
LMNA-201ENST00000347559 GZF1Q9H116 711 aaPredicted RBP19.87■□□□□ 0.77
LMNA-201ENST00000347559 HSP90AA1P07900 732 aaKnown RBP19.84■□□□□ 0.77
LMNA-201ENST00000347559 ABCC5O15440 1437 aa19.84■□□□□ 0.77
LMNA-201ENST00000347559 CDK13Q14004 1512 aaKnown RBP19.84■□□□□ 0.77
LMNA-201ENST00000347559 ABCA10Q8WWZ4 1543 aa19.84■□□□□ 0.77
LMNA-201ENST00000347559 TDRD9Q8NDG6 1382 aaKnown RBP19.84■□□□□ 0.77
LMNA-201ENST00000347559 MBD5Q9P267 1494 aa19.83■□□□□ 0.77
LMNA-201ENST00000347559 ROCK1Q13464 1354 aa19.83■□□□□ 0.76
LMNA-201ENST00000347559 BECN1Q14457 450 aa19.82■□□□□ 0.76
LMNA-201ENST00000347559 ZNF777Q9ULD5 760 aaPredicted RBP19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms