RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 JPH4Q96JJ6 628 aa22.01■■□□□ 1.11
UPF3B-202ENST00000345865 CDK11AQ9UQ88 783 aaPredicted RBP22.01■■□□□ 1.11
UPF3B-202ENST00000345865 TROQ12816 1431 aaPredicted RBP21.99■■□□□ 1.11
UPF3B-202ENST00000345865 MPHOSPH9Q99550 1183 aa21.99■■□□□ 1.11
UPF3B-202ENST00000345865 ROCK1Q13464 1354 aa21.98■■□□□ 1.11
UPF3B-202ENST00000345865 KIF14Q15058 1648 aa21.95■■□□□ 1.1
UPF3B-202ENST00000345865 CARMIL2Q6F5E8 1435 aa21.95■■□□□ 1.1
UPF3B-202ENST00000345865 FOXD1Q16676 465 aa21.95■■□□□ 1.1
UPF3B-202ENST00000345865 GPATCH8Q9UKJ3 1502 aaKnown RBP21.92■■□□□ 1.1
UPF3B-202ENST00000345865 CAMSAP2Q08AD1 1489 aa21.91■■□□□ 1.1
UPF3B-202ENST00000345865 PELP1Q8IZL8 1130 aaKnown RBP21.91■■□□□ 1.1
UPF3B-202ENST00000345865 ADCY10Q96PN6 1610 aa21.91■■□□□ 1.1
UPF3B-202ENST00000345865 CFDP1Q9UEE9 299 aaPredicted RBP21.89■■□□□ 1.1
UPF3B-202ENST00000345865 ITSN2Q9NZM3 1697 aa21.88■■□□□ 1.09
UPF3B-202ENST00000345865 ABCA8O94911 1581 aa21.87■■□□□ 1.09
UPF3B-202ENST00000345865 ANKRD30BQ9BXX2 1392 aa21.86■■□□□ 1.09
UPF3B-202ENST00000345865 L3MBTL2Q969R5 705 aa21.85■■□□□ 1.09
UPF3B-202ENST00000345865 ZNF777Q9ULD5 760 aaPredicted RBP21.84■■□□□ 1.09
UPF3B-202ENST00000345865 ATP10BO94823 1461 aa21.83■■□□□ 1.09
UPF3B-202ENST00000345865 NCOA1Q15788 1441 aa21.83■■□□□ 1.09
UPF3B-202ENST00000345865 RPRD2Q5VT52 1461 aaKnown RBP21.8■■□□□ 1.08
UPF3B-202ENST00000345865 HSPA5P11021 654 aaKnown RBP21.8■■□□□ 1.08
UPF3B-202ENST00000345865 SLC4A1APQ9BWU0 796 aaKnown RBP21.8■■□□□ 1.08
UPF3B-202ENST00000345865 CROCC2H7BZ55 1655 aa21.8■■□□□ 1.08
UPF3B-202ENST00000345865 ADGBQ8N7X0 1667 aa21.8■■□□□ 1.08
UPF3B-202ENST00000345865 CDC42BPAQ5VT25 1732 aa21.79■■□□□ 1.08
UPF3B-202ENST00000345865 ANP32CO43423 234 aa21.79■■□□□ 1.08
UPF3B-202ENST00000345865 PLEKHD1A6NEE1 506 aa21.79■■□□□ 1.08
UPF3B-202ENST00000345865 PZPP20742 1482 aa21.79■■□□□ 1.08
UPF3B-202ENST00000345865 ABCC10Q5T3U5 1492 aa21.79■■□□□ 1.08
UPF3B-202ENST00000345865 CCER2I3L3R5 266 aa21.78■■□□□ 1.08
UPF3B-202ENST00000345865 ADGRL2O95490 1459 aa21.77■■□□□ 1.08
UPF3B-202ENST00000345865 TEX14Q8IWB6 1497 aa21.76■■□□□ 1.07
UPF3B-202ENST00000345865 WASHC2AQ641Q2 1341 aa21.76■■□□□ 1.07
UPF3B-202ENST00000345865 SUPT16HQ9Y5B9 1047 aaKnown RBP21.75■■□□□ 1.07
UPF3B-202ENST00000345865 NBPF8Q3BBV2 869 aa21.74■■□□□ 1.07
UPF3B-202ENST00000345865 EIF4G2P78344 907 aaKnown RBP eCLIP21.72■■□□□ 1.072e-9■■■■■ 39.4
UPF3B-202ENST00000345865 PTPRGP23470 1445 aa21.71■■□□□ 1.07
UPF3B-202ENST00000345865 CHD1O14646 1710 aa21.71■■□□□ 1.07
UPF3B-202ENST00000345865 ANKRD30AQ9BXX3 1397 aa21.7■■□□□ 1.06
UPF3B-202ENST00000345865 C11orf95C9JLR9 678 aaPredicted RBP21.67■■□□□ 1.06
UPF3B-202ENST00000345865 ANKRD50Q9ULJ7 1429 aa21.67■■□□□ 1.06
UPF3B-202ENST00000345865 C9orf84Q5VXU9 1444 aa21.65■■□□□ 1.06
UPF3B-202ENST00000345865 KIAA1107Q9UPP5 1409 aa21.65■■□□□ 1.06
UPF3B-202ENST00000345865 SHANK2Q9UPX8 1470 aa21.64■■□□□ 1.05
UPF3B-202ENST00000345865 PKD2Q13563 968 aa21.63■■□□□ 1.05
UPF3B-202ENST00000345865 HNRNPMP52272 730 aaKnown RBP eCLIP21.62■■□□□ 1.05
UPF3B-202ENST00000345865 SPATA31E1Q6ZUB1 1445 aa21.61■■□□□ 1.05
UPF3B-202ENST00000345865 MBD5Q9P267 1494 aa21.6■■□□□ 1.05
UPF3B-202ENST00000345865 CDC42BPBQ9Y5S2 1711 aa21.6■■□□□ 1.05
UPF3B-202ENST00000345865 SHROOM2Q13796 1616 aa21.6■■□□□ 1.05
UPF3B-202ENST00000345865 CCDC7Q96M83 1385 aa21.59■■□□□ 1.05
UPF3B-202ENST00000345865 ERCC6L2Q5T890 1561 aa21.58■■□□□ 1.05
UPF3B-202ENST00000345865 SAMD9LQ8IVG5 1584 aa21.58■■□□□ 1.04
UPF3B-202ENST00000345865 ARHGEF5Q12774 1597 aa21.57■■□□□ 1.04
UPF3B-202ENST00000345865 CNTLNQ9NXG0 1405 aa21.57■■□□□ 1.04
UPF3B-202ENST00000345865 TSPY4P0CV99 314 aa21.57■■□□□ 1.04
UPF3B-202ENST00000345865 TSPY10P0CW01 314 aa21.57■■□□□ 1.04
UPF3B-202ENST00000345865 NUP155O75694 1391 aa21.57■■□□□ 1.04
UPF3B-202ENST00000345865 PREX2Q70Z35 1606 aa21.56■■□□□ 1.04
UPF3B-202ENST00000345865 KIF15Q9NS87 1388 aa21.54■■□□□ 1.04
UPF3B-202ENST00000345865 KDM5DQ9BY66 1539 aa21.52■■□□□ 1.04
UPF3B-202ENST00000345865 KIF7Q2M1P5 1343 aa21.51■■□□□ 1.03
UPF3B-202ENST00000345865 TTC37Q6PGP7 1564 aa21.51■■□□□ 1.03
UPF3B-202ENST00000345865 CCDC141Q6ZP82 1450 aa21.5■■□□□ 1.03
UPF3B-202ENST00000345865 POLR1AO95602 1720 aaPredicted RBP21.5■■□□□ 1.03
UPF3B-202ENST00000345865 CCDC184Q52MB2 194 aa21.49■■□□□ 1.03
UPF3B-202ENST00000345865 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.48■■□□□ 1.03
UPF3B-202ENST00000345865 ZNF326Q5BKZ1 582 aaKnown RBP21.47■■□□□ 1.03
UPF3B-202ENST00000345865 ABCC2Q92887 1545 aa21.47■■□□□ 1.03
UPF3B-202ENST00000345865 SYCP2Q9BX26 1530 aa21.46■■□□□ 1.03
UPF3B-202ENST00000345865 FKBP8Q14318 412 aa21.45■■□□□ 1.02
UPF3B-202ENST00000345865 PRKRIP1Q9H875 184 aaPredicted RBP21.45■■□□□ 1.02
UPF3B-202ENST00000345865 BCORL1Q5H9F3 1711 aa21.44■■□□□ 1.02
UPF3B-202ENST00000345865 ARHGAP5Q13017 1502 aa21.43■■□□□ 1.02
UPF3B-202ENST00000345865 USP47Q96K76 1375 aa21.43■■□□□ 1.02
UPF3B-202ENST00000345865 UHRF1BP1Q6BDS2 1440 aa21.42■■□□□ 1.02
UPF3B-202ENST00000345865 HNRNPUQ00839 825 aaKnown RBP eCLIP21.42■■□□□ 1.02
UPF3B-202ENST00000345865 RSPH4AQ5TD94 716 aa21.42■■□□□ 1.02
UPF3B-202ENST00000345865 BCANQ96GW7 911 aa21.41■■□□□ 1.02
UPF3B-202ENST00000345865 KDM5CP41229 1560 aa21.41■■□□□ 1.02
UPF3B-202ENST00000345865 FAM135AQ9P2D6 1515 aa21.4■■□□□ 1.02
UPF3B-202ENST00000345865 MYO5CQ9NQX4 1742 aa21.39■■□□□ 1.01
UPF3B-202ENST00000345865 MAST1Q9Y2H9 1570 aa21.38■■□□□ 1.01
UPF3B-202ENST00000345865 CLASP1Q7Z460 1538 aa21.38■■□□□ 1.01
UPF3B-202ENST00000345865 ARHGEF12Q9NZN5 1544 aa21.38■■□□□ 1.01
UPF3B-202ENST00000345865 RALGAPBQ86X10 1494 aa21.37■■□□□ 1.01
UPF3B-202ENST00000345865 KDM2AQ9Y2K7 1162 aa21.35■■□□□ 1.01
UPF3B-202ENST00000345865 ZCCHC11Q5TAX3 1644 aaKnown RBP21.35■■□□□ 1.01
UPF3B-202ENST00000345865 DHX29Q7Z478 1369 aaKnown RBP21.33■■□□□ 1.01
UPF3B-202ENST00000345865 DCAF11Q8TEB1 546 aa21.33■■□□□ 1
UPF3B-202ENST00000345865 UNC13BO14795 1591 aa21.33■■□□□ 1
UPF3B-202ENST00000345865 CARD11Q9BXL7 1154 aa21.31■■□□□ 1
UPF3B-202ENST00000345865 MRS2Q9HD23 443 aa21.31■■□□□ 1
UPF3B-202ENST00000345865 PLXNC1O60486 1568 aa21.31■■□□□ 1
UPF3B-202ENST00000345865 PLEKHH2Q8IVE3 1493 aa21.31■■□□□ 1
UPF3B-202ENST00000345865 PLA2R1Q13018 1463 aa21.3■■□□□ 1
UPF3B-202ENST00000345865 PLCH2O75038 1416 aa21.29■■□□□ 1
UPF3B-202ENST00000345865 NEFLP07196 543 aa21.29■■□□□ 1
UPF3B-202ENST00000345865 FAM9BQ8IZU0 186 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms