RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 PCF11O94913 1555 aaKnown RBP24.49■■□□□ 1.51
SMPD1-201ENST00000342245 RRP1P56182 461 aaKnown RBP24.47■■□□□ 1.51
SMPD1-201ENST00000342245 FYCO1Q9BQS8 1478 aa24.47■■□□□ 1.51
SMPD1-201ENST00000342245 NAIPQ13075 1403 aa24.46■■□□□ 1.51
SMPD1-201ENST00000342245 RAD54L2Q9Y4B4 1467 aa24.46■■□□□ 1.51
SMPD1-201ENST00000342245 VSIG10Q8N0Z9 540 aa24.45■■□□□ 1.51
SMPD1-201ENST00000342245 P3H3Q8IVL6 736 aa24.45■■□□□ 1.5
SMPD1-201ENST00000342245 HECW1Q76N89 1606 aa24.45■■□□□ 1.5
SMPD1-201ENST00000342245 NESP48681 1621 aa24.43■■□□□ 1.5
SMPD1-201ENST00000342245 AQRO60306 1485 aaKnown RBP eCLIP24.43■■□□□ 1.5
SMPD1-201ENST00000342245 RRP9O43818 475 aaKnown RBP24.4■■□□□ 1.5
SMPD1-201ENST00000342245 EXOC6Q8TAG9 804 aa24.38■■□□□ 1.49
SMPD1-201ENST00000342245 DNMBPQ6XZF7 1577 aa24.38■■□□□ 1.49
SMPD1-201ENST00000342245 KIF7Q2M1P5 1343 aa24.38■■□□□ 1.49
SMPD1-201ENST00000342245 TOPBP1Q92547 1522 aa24.37■■□□□ 1.49
SMPD1-201ENST00000342245 CASKIN1Q8WXD9 1431 aa24.36■■□□□ 1.49
SMPD1-201ENST00000342245 POLA1P09884 1462 aaPredicted RBP24.36■■□□□ 1.49
SMPD1-201ENST00000342245 DCAF11Q8TEB1 546 aa24.36■■□□□ 1.49
SMPD1-201ENST00000342245 PODXL2Q9NZ53 605 aa24.35■■□□□ 1.49
SMPD1-201ENST00000342245 L1TD1Q5T7N2 865 aaKnown RBP24.35■■□□□ 1.49
SMPD1-201ENST00000342245 SPATA31E1Q6ZUB1 1445 aa24.35■■□□□ 1.49
SMPD1-201ENST00000342245 ATP1B4Q9UN42 357 aaPredicted RBP24.35■■□□□ 1.49
SMPD1-201ENST00000342245 PTPRKQ15262 1439 aa24.34■■□□□ 1.49
SMPD1-201ENST00000342245 ABCA10Q8WWZ4 1543 aa24.33■■□□□ 1.49
SMPD1-201ENST00000342245 DHX29Q7Z478 1369 aaKnown RBP24.33■■□□□ 1.49
SMPD1-201ENST00000342245 HSP90AA2PQ14568 343 aaPredicted RBP24.32■■□□□ 1.48
SMPD1-201ENST00000342245 PNISRQ8TF01 805 aaKnown RBP24.32■■□□□ 1.48
SMPD1-201ENST00000342245 RCAN3Q9UKA8 241 aa24.31■■□□□ 1.48
SMPD1-201ENST00000342245 MIA2Q96PC5 1412 aa24.3■■□□□ 1.48
SMPD1-201ENST00000342245 EFCAB5A4FU69 1503 aa24.3■■□□□ 1.48
SMPD1-201ENST00000342245 GCC2Q8IWJ2 1684 aa24.3■■□□□ 1.48
SMPD1-201ENST00000342245 PDE3BQ13370 1112 aa24.3■■□□□ 1.48
SMPD1-201ENST00000342245 FHOD3Q2V2M9 1422 aa24.3■■□□□ 1.48
SMPD1-201ENST00000342245 ARID4BQ4LE39 1312 aaPredicted RBP24.29■■□□□ 1.48
SMPD1-201ENST00000342245 RRAGDQ9NQL2 400 aaPredicted RBP24.27■■□□□ 1.48
SMPD1-201ENST00000342245 LRPPRCP42704 1394 aaKnown RBP24.27■■□□□ 1.48
SMPD1-201ENST00000342245 HSP90AA1P07900 732 aaKnown RBP24.26■■□□□ 1.47
SMPD1-201ENST00000342245 FRAT2O75474 233 aaPredicted RBP24.25■■□□□ 1.47
SMPD1-201ENST00000342245 L3MBTL2Q969R5 705 aa24.25■■□□□ 1.47
SMPD1-201ENST00000342245 KTN1Q86UP2 1357 aaKnown RBP24.24■■□□□ 1.47
SMPD1-201ENST00000342245 TMC1Q8TDI8 760 aa24.23■■□□□ 1.47
SMPD1-201ENST00000342245 DENND4BO75064 1496 aaPredicted RBP24.22■■□□□ 1.47
SMPD1-201ENST00000342245 MYOM3Q5VTT5 1437 aa24.21■■□□□ 1.47
SMPD1-201ENST00000342245 ROCK2O75116 1388 aaKnown RBP24.2■■□□□ 1.47
SMPD1-201ENST00000342245 URB2Q14146 1524 aaKnown RBP24.2■■□□□ 1.46
SMPD1-201ENST00000342245 FAM161AQ3B820 660 aa24.19■■□□□ 1.46
SMPD1-201ENST00000342245 BRD4O60885 1362 aaPredicted RBP24.19■■□□□ 1.46
SMPD1-201ENST00000342245 PNNQ9H307 717 aaKnown RBP24.19■■□□□ 1.46
SMPD1-201ENST00000342245 RPRD2Q5VT52 1461 aaKnown RBP24.18■■□□□ 1.46
SMPD1-201ENST00000342245 DNAJC5BQ9UF47 199 aa24.18■■□□□ 1.46
SMPD1-201ENST00000342245 CLCN1P35523 988 aa24.17■■□□□ 1.46
SMPD1-201ENST00000342245 NAP1L5Q96NT1 182 aaPredicted RBP24.17■■□□□ 1.46
SMPD1-201ENST00000342245 SLC4A3P48751 1232 aa24.16■■□□□ 1.46
SMPD1-201ENST00000342245 CUL7Q14999 1698 aa24.16■■□□□ 1.46
SMPD1-201ENST00000342245 TDRD9Q8NDG6 1382 aaKnown RBP24.16■■□□□ 1.46
SMPD1-201ENST00000342245 TEX14Q8IWB6 1497 aa24.15■■□□□ 1.46
SMPD1-201ENST00000342245 MTUS2Q5JR59 1369 aa24.15■■□□□ 1.46
SMPD1-201ENST00000342245 SUPT6HQ7KZ85 1726 aaKnown RBP24.12■■□□□ 1.45
SMPD1-201ENST00000342245 LAMC3Q9Y6N6 1575 aa24.12■■□□□ 1.45
SMPD1-201ENST00000342245 CENPQQ7L2Z9 268 aaPredicted RBP24.11■■□□□ 1.45
SMPD1-201ENST00000342245 MPHOSPH9Q99550 1183 aa24.11■■□□□ 1.45
SMPD1-201ENST00000342245 CTTNBP2Q8WZ74 1663 aa24.1■■□□□ 1.45
SMPD1-201ENST00000342245 KIF15Q9NS87 1388 aa24.1■■□□□ 1.45
SMPD1-201ENST00000342245 PLEKHG5O94827 1062 aa24.1■■□□□ 1.45
SMPD1-201ENST00000342245 NBPF8Q3BBV2 869 aa24.1■■□□□ 1.45
SMPD1-201ENST00000342245 SLC24A1O60721 1099 aa24.09■■□□□ 1.45
SMPD1-201ENST00000342245 RALBP1Q15311 655 aa24.08■■□□□ 1.45
SMPD1-201ENST00000342245 KDM2BQ8NHM5 1336 aa24.08■■□□□ 1.44
SMPD1-201ENST00000342245 MYBBP1AQ9BQG0 1328 aaKnown RBP24.07■■□□□ 1.44
SMPD1-201ENST00000342245 TCOF1Q13428 1488 aaKnown RBP24.07■■□□□ 1.44
SMPD1-201ENST00000342245 CENPJQ9HC77 1338 aaPredicted RBP24.07■■□□□ 1.44
SMPD1-201ENST00000342245 INSRP06213 1382 aa24.06■■□□□ 1.44
SMPD1-201ENST00000342245 C8orf34Q49A92 452 aa24.06■■□□□ 1.44
SMPD1-201ENST00000342245 THOC2Q8NI27 1593 aaKnown RBP24.05■■□□□ 1.44
SMPD1-201ENST00000342245 ANKRD30BQ9BXX2 1392 aa24.05■■□□□ 1.44
SMPD1-201ENST00000342245 EHBP1L1Q8N3D4 1523 aa24.05■■□□□ 1.44
SMPD1-201ENST00000342245 SNAPC4Q5SXM2 1469 aa24.03■■□□□ 1.44
SMPD1-201ENST00000342245 ZMYM4Q5VZL5 1548 aa24.03■■□□□ 1.44
SMPD1-201ENST00000342245 GAPVD1Q14C86 1478 aa24.03■■□□□ 1.44
SMPD1-201ENST00000342245 POGKQ9P215 609 aa24.02■■□□□ 1.44
SMPD1-201ENST00000342245 CRBNQ96SW2 442 aa24.02■■□□□ 1.44
SMPD1-201ENST00000342245 BCORL1Q5H9F3 1711 aa24.01■■□□□ 1.43
SMPD1-201ENST00000342245 BECN1Q14457 450 aa24.01■■□□□ 1.43
SMPD1-201ENST00000342245 PDS5BQ9NTI5 1447 aa24■■□□□ 1.43
SMPD1-201ENST00000342245 UGGT2Q9NYU1 1516 aa23.99■■□□□ 1.43
SMPD1-201ENST00000342245 PLEKHH2Q8IVE3 1493 aa23.98■■□□□ 1.43
SMPD1-201ENST00000342245 ARHGEF11O15085 1522 aa23.98■■□□□ 1.43
SMPD1-201ENST00000342245 GOLGA6L3A6NEY3 463 aa23.98■■□□□ 1.43
SMPD1-201ENST00000342245 USP47Q96K76 1375 aa23.98■■□□□ 1.43
SMPD1-201ENST00000342245 RRP7BPQ9NSQ0 103 aa23.97■■□□□ 1.43
SMPD1-201ENST00000342245 VIRMAQ69YN4 1812 aaKnown RBP23.97■■□□□ 1.43
SMPD1-201ENST00000342245 TPM2P07951 284 aa23.96■■□□□ 1.43
SMPD1-201ENST00000342245 KDM5CP41229 1560 aa23.95■■□□□ 1.42
SMPD1-201ENST00000342245 KDM6BO15054 1643 aa23.94■■□□□ 1.42
SMPD1-201ENST00000342245 KIF14Q15058 1648 aa23.94■■□□□ 1.42
SMPD1-201ENST00000342245 PDCL3Q9H2J4 239 aa23.94■■□□□ 1.42
SMPD1-201ENST00000342245 KIF21AQ7Z4S6 1674 aa23.94■■□□□ 1.42
SMPD1-201ENST00000342245 FSD2A1L4K1 749 aa23.94■■□□□ 1.42
SMPD1-201ENST00000342245 CALD1Q05682 793 aaKnown RBP23.94■■□□□ 1.42
SMPD1-201ENST00000342245 SAMD9Q5K651 1589 aa23.93■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms