RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 NWD1Q149M9 1564 aa3.75□□□□□ -1.81
LINC00643-201ENST00000334389 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.75□□□□□ -1.81
LINC00643-201ENST00000334389 PLXNC1O60486 1568 aa3.75□□□□□ -1.81
LINC00643-201ENST00000334389 FGD5Q6ZNL6 1462 aa3.75□□□□□ -1.81
LINC00643-201ENST00000334389 SHPRHQ149N8 1683 aa3.74□□□□□ -1.81
LINC00643-201ENST00000334389 HECW1Q76N89 1606 aa3.74□□□□□ -1.81
LINC00643-201ENST00000334389 EIF2AK4Q9P2K8 1649 aaKnown RBP3.73□□□□□ -1.81
LINC00643-201ENST00000334389 ABCC3O15438 1527 aa3.73□□□□□ -1.81
LINC00643-201ENST00000334389 KIF21BO75037 1637 aa3.73□□□□□ -1.81
LINC00643-201ENST00000334389 ADGBQ8N7X0 1667 aa3.73□□□□□ -1.81
LINC00643-201ENST00000334389 ITSN2Q9NZM3 1697 aa3.72□□□□□ -1.81
LINC00643-201ENST00000334389 ALKQ9UM73 1620 aa3.72□□□□□ -1.81
LINC00643-201ENST00000334389 MED14O60244 1454 aa3.72□□□□□ -1.81
LINC00643-201ENST00000334389 PRAG1Q86YV5 1406 aa3.71□□□□□ -1.81
LINC00643-201ENST00000334389 MADDQ8WXG6 1647 aa3.71□□□□□ -1.82
LINC00643-201ENST00000334389 MED1Q15648 1581 aaPredicted RBP3.71□□□□□ -1.82
LINC00643-201ENST00000334389 CDK13Q14004 1512 aaKnown RBP3.71□□□□□ -1.82
LINC00643-201ENST00000334389 C3P01024 1663 aa3.7□□□□□ -1.82
LINC00643-201ENST00000334389 FANCAO15360 1455 aa3.7□□□□□ -1.82
LINC00643-201ENST00000334389 GOLGA3Q08378 1498 aa3.7□□□□□ -1.82
LINC00643-201ENST00000334389 SOCS7O14512 581 aa3.7□□□□□ -1.82
LINC00643-201ENST00000334389 KDM5DQ9BY66 1539 aa3.7□□□□□ -1.82
LINC00643-201ENST00000334389 NCOA2Q15596 1464 aa3.7□□□□□ -1.82
LINC00643-201ENST00000334389 LRRC9Q6ZRR7 1453 aa3.7□□□□□ -1.82
LINC00643-201ENST00000334389 MROH1Q8NDA8 1641 aa3.7□□□□□ -1.82
LINC00643-201ENST00000334389 MYO3AQ8NEV4 1616 aa3.7□□□□□ -1.82
LINC00643-201ENST00000334389 PTPRMP28827 1452 aa3.69□□□□□ -1.82
LINC00643-201ENST00000334389 UNC13BO14795 1591 aa3.69□□□□□ -1.82
LINC00643-201ENST00000334389 SETD1BQ9UPS6 1966 aaKnown RBP3.69□□□□□ -1.82
LINC00643-201ENST00000334389 CNTLNQ9NXG0 1405 aa3.69□□□□□ -1.82
LINC00643-201ENST00000334389 TCOF1Q13428 1488 aaKnown RBP3.68□□□□□ -1.82
LINC00643-201ENST00000334389 NEXMIFQ5QGS0 1516 aa3.68□□□□□ -1.82
LINC00643-201ENST00000334389 VWDEQ8N2E2 1590 aa3.68□□□□□ -1.82
LINC00643-201ENST00000334389 COL22A1Q8NFW1 1626 aaPredicted RBP3.68□□□□□ -1.82
LINC00643-201ENST00000334389 RIMS1Q86UR5 1692 aaKnown RBP3.68□□□□□ -1.82
LINC00643-201ENST00000334389 QSER1Q2KHR3 1735 aa3.68□□□□□ -1.82
LINC00643-201ENST00000334389 MYO5CQ9NQX4 1742 aa3.68□□□□□ -1.82
LINC00643-201ENST00000334389 SOGA1O94964 1423 aa3.68□□□□□ -1.82
LINC00643-201ENST00000334389 MAST1Q9Y2H9 1570 aa3.67□□□□□ -1.82
LINC00643-201ENST00000334389 FGD6Q6ZV73 1430 aa3.67□□□□□ -1.82
LINC00643-201ENST00000334389 NCOA3Q9Y6Q9 1424 aa3.67□□□□□ -1.82
LINC00643-201ENST00000334389 DISP1Q96F81 1524 aa3.67□□□□□ -1.82
LINC00643-201ENST00000334389 DIP2AQ14689 1571 aa3.66□□□□□ -1.82
LINC00643-201ENST00000334389 INO80Q9ULG1 1556 aaPredicted RBP3.66□□□□□ -1.82
LINC00643-201ENST00000334389 AKT1S1Q96B36 256 aa3.66□□□□□ -1.82
LINC00643-201ENST00000334389 ABCA6Q8N139 1617 aa3.66□□□□□ -1.82
LINC00643-201ENST00000334389 FXR2P51116 673 aaKnown RBP eCLIP3.65□□□□□ -1.82
LINC00643-201ENST00000334389 SIGLEC1Q9BZZ2 1709 aa3.65□□□□□ -1.82
LINC00643-201ENST00000334389 MARF1Q9Y4F3 1742 aaKnown RBP3.65□□□□□ -1.83
LINC00643-201ENST00000334389 HAX1O00165 279 aa3.65□□□□□ -1.83
LINC00643-201ENST00000334389 CNKSR2Q8WXI2 1034 aa3.65□□□□□ -1.83
LINC00643-201ENST00000334389 PREX2Q70Z35 1606 aa3.65□□□□□ -1.83
LINC00643-201ENST00000334389 SUPT6HQ7KZ85 1726 aaKnown RBP3.65□□□□□ -1.83
LINC00643-201ENST00000334389 ZFYVE16Q7Z3T8 1539 aa3.65□□□□□ -1.83
LINC00643-201ENST00000334389 PIP4P2Q8N4L2 257 aa3.65□□□□□ -1.83
LINC00643-201ENST00000334389 XIRP1Q702N8 1843 aaKnown RBP3.64□□□□□ -1.83
LINC00643-201ENST00000334389 RAD54L2Q9Y4B4 1467 aa3.64□□□□□ -1.83
LINC00643-201ENST00000334389 ARHGAP23Q9P227 1491 aa3.64□□□□□ -1.83
LINC00643-201ENST00000334389 AHDC1Q5TGY3 1603 aaPredicted RBP3.64□□□□□ -1.83
LINC00643-201ENST00000334389 GRWD1Q9BQ67 446 aaKnown RBP eCLIP3.64□□□□□ -1.83
LINC00643-201ENST00000334389 TNIKQ9UKE5 1360 aa3.64□□□□□ -1.83
LINC00643-201ENST00000334389 MLH3Q9UHC1 1453 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 POTEMA6NI47 508 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 ATP10BO94823 1461 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 NCOA1Q15788 1441 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 CD109Q6YHK3 1445 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 UACAQ9BZF9 1416 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 UGGT1Q9NYU2 1555 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 RAPGEF2Q9Y4G8 1499 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 RAPGEF6Q8TEU7 1601 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 NEURL4Q96JN8 1562 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 WRNQ14191 1432 aaPredicted RBP eCLIP3.63□□□□□ -1.83
LINC00643-201ENST00000334389 POGZQ7Z3K3 1410 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 KDM4FA0A1W2PPD8 638 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 DNMT1P26358 1616 aaKnown RBP3.62□□□□□ -1.83
LINC00643-201ENST00000334389 DIP2CQ9Y2E4 1556 aa3.62□□□□□ -1.83
LINC00643-201ENST00000334389 ATP7AQ04656 1500 aa3.62□□□□□ -1.83
LINC00643-201ENST00000334389 CARMIL2Q6F5E8 1435 aa3.61□□□□□ -1.83
LINC00643-201ENST00000334389 ZNF219Q9P2Y4 722 aaPredicted RBP3.61□□□□□ -1.83
LINC00643-201ENST00000334389 IQGAP3Q86VI3 1631 aa3.6□□□□□ -1.83
LINC00643-201ENST00000334389 C9orf84Q5VXU9 1444 aa3.6□□□□□ -1.83
LINC00643-201ENST00000334389 ASXL2Q76L83 1435 aa3.6□□□□□ -1.83
LINC00643-201ENST00000334389 YEATS2Q9ULM3 1422 aa3.6□□□□□ -1.83
LINC00643-201ENST00000334389 POTEGQ6S5H5 508 aa3.6□□□□□ -1.83
LINC00643-201ENST00000334389 ILDR1Q86SU0 546 aaPredicted RBP3.6□□□□□ -1.83
LINC00643-201ENST00000334389 LRP6O75581 1613 aa3.59□□□□□ -1.83
LINC00643-201ENST00000334389 CEP170BQ9Y4F5 1589 aaPredicted RBP3.59□□□□□ -1.84
LINC00643-201ENST00000334389 IQGAP1P46940 1657 aa3.59□□□□□ -1.84
LINC00643-201ENST00000334389 CAPN15O75808 1086 aa3.59□□□□□ -1.84
LINC00643-201ENST00000334389 SLIT1O75093 1534 aa3.58□□□□□ -1.84
LINC00643-201ENST00000334389 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.58□□□□□ -1.84
LINC00643-201ENST00000334389 AKNAQ7Z591 1439 aa3.58□□□□□ -1.84
LINC00643-201ENST00000334389 C19orf67A6NJJ6 358 aa3.58□□□□□ -1.84
LINC00643-201ENST00000334389 PRG4Q92954 1404 aaPredicted RBP3.58□□□□□ -1.84
LINC00643-201ENST00000334389 RREB1Q92766 1687 aa3.58□□□□□ -1.84
LINC00643-201ENST00000334389 EFCAB6Q5THR3 1501 aa3.57□□□□□ -1.84
LINC00643-201ENST00000334389 TET3O43151 1660 aa3.57□□□□□ -1.84
LINC00643-201ENST00000334389 TIAM1Q13009 1591 aa3.57□□□□□ -1.84
LINC00643-201ENST00000334389 LMTK2Q8IWU2 1503 aa3.57□□□□□ -1.84
LINC00643-201ENST00000334389 PTPRKQ15262 1439 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms