RNA–Protein interactions for RNA: ENST00000334218.9

CDC42BPA-201, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5 BASIC

Gene CDC42BPA, Length 10,134 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-201ENST00000334218 AK7Q96M32 723 aa7.63□□□□□ -1.19
CDC42BPA-201ENST00000334218 IRX3P78415 501 aaPredicted RBP7.63□□□□□ -1.19
CDC42BPA-201ENST00000334218 ZRSR2Q15696 482 aaKnown RBP7.63□□□□□ -1.19
CDC42BPA-201ENST00000334218 SWAP70Q9UH65 585 aa7.63□□□□□ -1.19
CDC42BPA-201ENST00000334218 CSPP1Q1MSJ5 1256 aa7.62□□□□□ -1.19
CDC42BPA-201ENST00000334218 GOLGA6L10A0A0M3HER8 536 aa7.62□□□□□ -1.19
CDC42BPA-201ENST00000334218 SEPT14Q6ZU15 432 aa7.62□□□□□ -1.19
CDC42BPA-201ENST00000334218 MRVI1Q9Y6F6 885 aa7.62□□□□□ -1.19
CDC42BPA-201ENST00000334218 TPM2P07951 284 aa7.61□□□□□ -1.19
CDC42BPA-201ENST00000334218 MPHOSPH10O00566 681 aaKnown RBP7.61□□□□□ -1.19
CDC42BPA-201ENST00000334218 DZIP1Q86YF9 867 aaKnown RBP7.61□□□□□ -1.19
CDC42BPA-201ENST00000334218 RASSF8Q8NHQ8 419 aa7.61□□□□□ -1.19
CDC42BPA-201ENST00000334218 CTR9Q6PD62 1173 aa7.61□□□□□ -1.19
CDC42BPA-201ENST00000334218 ERCC6Q03468 1493 aa7.61□□□□□ -1.19
CDC42BPA-201ENST00000334218 HMGB3O15347 200 aaKnown RBP7.6□□□□□ -1.19
CDC42BPA-201ENST00000334218 DCTN1Q14203 1278 aa7.6□□□□□ -1.19
CDC42BPA-201ENST00000334218 FAM193AP78312 1265 aa7.6□□□□□ -1.19
CDC42BPA-201ENST00000334218 CALD1Q05682 793 aaKnown RBP7.6□□□□□ -1.19
CDC42BPA-201ENST00000334218 LIG1P18858 919 aa7.6□□□□□ -1.19
CDC42BPA-201ENST00000334218 CCP110O43303 1012 aa7.6□□□□□ -1.19
CDC42BPA-201ENST00000334218 SARNPP82979 210 aaKnown RBP7.59□□□□□ -1.19
CDC42BPA-201ENST00000334218 TIMELESSQ9UNS1 1208 aa7.58□□□□□ -1.2
CDC42BPA-201ENST00000334218 ACBD3Q9H3P7 528 aa7.58□□□□□ -1.2
CDC42BPA-201ENST00000334218 VGFO15240 615 aaPredicted RBP7.58□□□□□ -1.2
CDC42BPA-201ENST00000334218 NOC3LQ8WTT2 800 aaKnown RBP7.58□□□□□ -1.2
CDC42BPA-201ENST00000334218 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.58□□□□□ -1.2
CDC42BPA-201ENST00000334218 CHMP7Q8WUX9 453 aaPredicted RBP7.57□□□□□ -1.2
CDC42BPA-201ENST00000334218 CDR1P51861 262 aa7.57□□□□□ -1.2
CDC42BPA-201ENST00000334218 SYAP1Q96A49 352 aaPredicted RBP7.57□□□□□ -1.2
CDC42BPA-201ENST00000334218 CENPHQ9H3R5 247 aa7.57□□□□□ -1.2
CDC42BPA-201ENST00000334218 HSP90AB1P08238 724 aaKnown RBP7.57□□□□□ -1.2
CDC42BPA-201ENST00000334218 GORABQ5T7V8 394 aa7.57□□□□□ -1.2
CDC42BPA-201ENST00000334218 PLCB2Q00722 1185 aa7.57□□□□□ -1.2
CDC42BPA-201ENST00000334218 FAM107BQ9H098 131 aa7.56□□□□□ -1.2
CDC42BPA-201ENST00000334218 PDS5BQ9NTI5 1447 aa7.56□□□□□ -1.2
CDC42BPA-201ENST00000334218 MIPOL1Q8TD10 442 aa7.56□□□□□ -1.2
CDC42BPA-201ENST00000334218 BAZ1BQ9UIG0 1483 aaKnown RBP7.56□□□□□ -1.2
CDC42BPA-201ENST00000334218 TCHPQ9BT92 498 aa7.55□□□□□ -1.2
CDC42BPA-201ENST00000334218 CCDC70Q6NSX1 233 aa7.55□□□□□ -1.2
CDC42BPA-201ENST00000334218 DNAJC2Q99543 621 aaKnown RBP7.55□□□□□ -1.2
CDC42BPA-201ENST00000334218 POLR3GO15318 223 aaPredicted RBP7.55□□□□□ -1.2
CDC42BPA-201ENST00000334218 FKBP8Q14318 412 aa7.55□□□□□ -1.2
CDC42BPA-201ENST00000334218 TSPY4P0CV99 314 aa7.55□□□□□ -1.2
CDC42BPA-201ENST00000334218 TSPY10P0CW01 314 aa7.55□□□□□ -1.2
CDC42BPA-201ENST00000334218 KLHL34Q8N239 644 aa7.55□□□□□ -1.2
CDC42BPA-201ENST00000334218 ZNF622Q969S3 477 aaKnown RBP eCLIP7.55□□□□□ -1.23e-7■■□□□ 13.1
CDC42BPA-201ENST00000334218 GOLGA6L7A0A1B0GV03 622 aa7.54□□□□□ -1.2
CDC42BPA-201ENST00000334218 AEBP1Q8IUX7 1158 aa7.54□□□□□ -1.2
CDC42BPA-201ENST00000334218 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.54□□□□□ -1.2
CDC42BPA-201ENST00000334218 FAM50AQ14320 339 aaKnown RBP7.54□□□□□ -1.2
CDC42BPA-201ENST00000334218 NAP1L1P55209 391 aaKnown RBP7.54□□□□□ -1.2
CDC42BPA-201ENST00000334218 GPATCH11Q8N954 259 aa7.54□□□□□ -1.2
CDC42BPA-201ENST00000334218 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.54□□□□□ -1.2
CDC42BPA-201ENST00000334218 FBXW7Q969H0 707 aa7.53□□□□□ -1.2
CDC42BPA-201ENST00000334218 ARGLU1Q9NWB6 273 aaPredicted RBP7.53□□□□□ -1.2
CDC42BPA-201ENST00000334218 MCCP23508 829 aa7.53□□□□□ -1.2
CDC42BPA-201ENST00000334218 NOL8Q76FK4 1167 aaKnown RBP7.53□□□□□ -1.2
CDC42BPA-201ENST00000334218 IBSPP21815 317 aaPredicted RBP7.53□□□□□ -1.2
CDC42BPA-201ENST00000334218 SEPT11Q9NVA2 429 aaKnown RBP7.53□□□□□ -1.2
CDC42BPA-201ENST00000334218 SPATA24Q86W54 205 aa7.53□□□□□ -1.2
CDC42BPA-201ENST00000334218 FAM114A1Q8IWE2 563 aa7.53□□□□□ -1.2
CDC42BPA-201ENST00000334218 BAZ1AQ9NRL2 1556 aaPredicted RBP7.53□□□□□ -1.2
CDC42BPA-201ENST00000334218 TRIM6-TRIM34B2RNG4 842 aa7.52□□□□□ -1.2
CDC42BPA-201ENST00000334218 GBP2P32456 591 aaPredicted RBP7.52□□□□□ -1.2
CDC42BPA-201ENST00000334218 LEKR1Q6ZMV7 388 aa7.52□□□□□ -1.2
CDC42BPA-201ENST00000334218 TRIM34Q9BYJ4 488 aa7.52□□□□□ -1.2
CDC42BPA-201ENST00000334218 DDX11Q96FC9 970 aa7.52□□□□□ -1.21
CDC42BPA-201ENST00000334218 RBM25P49756 843 aaKnown RBP7.52□□□□□ -1.21
CDC42BPA-201ENST00000334218 RALBP1Q15311 655 aa7.52□□□□□ -1.21
CDC42BPA-201ENST00000334218 KNSTRNQ9Y448 316 aa7.52□□□□□ -1.21
CDC42BPA-201ENST00000334218 WWC1Q8IX03 1113 aa7.51□□□□□ -1.21
CDC42BPA-201ENST00000334218 FAM13BQ9NYF5 915 aa7.51□□□□□ -1.21
CDC42BPA-201ENST00000334218 CPSF2Q9P2I0 782 aaKnown RBP7.51□□□□□ -1.21
CDC42BPA-201ENST00000334218 LETM1O95202 739 aaPredicted RBP7.51□□□□□ -1.21
CDC42BPA-201ENST00000334218 ESF1Q9H501 851 aaKnown RBP7.51□□□□□ -1.21
CDC42BPA-201ENST00000334218 PAXIP1Q6ZW49 1069 aaPredicted RBP7.51□□□□□ -1.21
CDC42BPA-201ENST00000334218 GIMAP7Q8NHV1 300 aa7.51□□□□□ -1.21
CDC42BPA-201ENST00000334218 KIAA1328Q86T90 577 aa7.51□□□□□ -1.21
CDC42BPA-201ENST00000334218 UIMC1Q96RL1 719 aa7.51□□□□□ -1.21
CDC42BPA-201ENST00000334218 WDR66Q8TBY9 1149 aa7.5□□□□□ -1.21
CDC42BPA-201ENST00000334218 SHTN1A0MZ66 631 aa7.5□□□□□ -1.21
CDC42BPA-201ENST00000334218 PLEKHG5O94827 1062 aa7.5□□□□□ -1.21
CDC42BPA-201ENST00000334218 SMARCA2P51531 1590 aa7.5□□□□□ -1.21
CDC42BPA-201ENST00000334218 E9PSI1 815 aa7.5□□□□□ -1.21
CDC42BPA-201ENST00000334218 WDR70Q9NW82 654 aa7.5□□□□□ -1.21
CDC42BPA-201ENST00000334218 CALCOCO1Q9P1Z2 691 aa7.5□□□□□ -1.21
CDC42BPA-201ENST00000334218 ZNHIT6Q9NWK9 470 aaKnown RBP7.49□□□□□ -1.21
CDC42BPA-201ENST00000334218 CAVIN1Q6NZI2 390 aaKnown RBP7.49□□□□□ -1.21
CDC42BPA-201ENST00000334218 KIF16BQ96L93 1317 aa7.49□□□□□ -1.21
CDC42BPA-201ENST00000334218 GOLGA6L9A6NEM1 432 aa7.49□□□□□ -1.21
CDC42BPA-201ENST00000334218 ZBTB17Q13105 803 aa7.49□□□□□ -1.21
CDC42BPA-201ENST00000334218 GOLIM4O00461 696 aa7.49□□□□□ -1.21
CDC42BPA-201ENST00000334218 ITPRIPQ8IWB1 547 aa7.49□□□□□ -1.21
CDC42BPA-201ENST00000334218 CHMP4BQ9H444 224 aaKnown RBP7.49□□□□□ -1.21
CDC42BPA-201ENST00000334218 CECR2Q9BXF3 1484 aa7.48□□□□□ -1.21
CDC42BPA-201ENST00000334218 RNF168Q8IYW5 571 aaPredicted RBP7.48□□□□□ -1.21
CDC42BPA-201ENST00000334218 GBP4Q96PP9 640 aa7.48□□□□□ -1.21
CDC42BPA-201ENST00000334218 PDILTQ8N807 584 aa7.48□□□□□ -1.21
CDC42BPA-201ENST00000334218 NAP1L4Q99733 375 aaKnown RBP7.48□□□□□ -1.21
CDC42BPA-201ENST00000334218 CFAP57Q96MR6 1250 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms