RNA–Protein interactions for RNA: ENST00000331920.10

PTCH1-201, Transcript of patched 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTCH1, Length 8,057 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-201ENST00000331920 DCAF8Q5TAQ9 597 aa20.71■□□□□ 0.91
PTCH1-201ENST00000331920 CCAR2Q8N163 923 aaKnown RBP20.71■□□□□ 0.91
PTCH1-201ENST00000331920 ABCC9O60706 1549 aa20.7■□□□□ 0.9
PTCH1-201ENST00000331920 MTUS2Q5JR59 1369 aa20.7■□□□□ 0.9
PTCH1-201ENST00000331920 CDCA8Q53HL2 280 aa20.69■□□□□ 0.9
PTCH1-201ENST00000331920 CNKSR2Q8WXI2 1034 aa20.69■□□□□ 0.9
PTCH1-201ENST00000331920 SLKQ9H2G2 1235 aaPredicted RBP20.69■□□□□ 0.9
PTCH1-201ENST00000331920 PPP4R2Q9NY27 417 aa20.69■□□□□ 0.9
PTCH1-201ENST00000331920 MS4A1P11836 297 aa20.68■□□□□ 0.9
PTCH1-201ENST00000331920 TPM3P06753 285 aa20.68■□□□□ 0.9
PTCH1-201ENST00000331920 GBP4Q96PP9 640 aa20.68■□□□□ 0.9
PTCH1-201ENST00000331920 NOL8Q76FK4 1167 aaKnown RBP20.68■□□□□ 0.9
PTCH1-201ENST00000331920 CARD11Q9BXL7 1154 aa20.67■□□□□ 0.9
PTCH1-201ENST00000331920 GORABQ5T7V8 394 aa20.66■□□□□ 0.9
PTCH1-201ENST00000331920 MARCH6O60337 910 aa20.66■□□□□ 0.9
PTCH1-201ENST00000331920 RTF1Q92541 710 aaKnown RBP20.65■□□□□ 0.9
PTCH1-201ENST00000331920 HTATSF1O43719 755 aaKnown RBP20.65■□□□□ 0.9
PTCH1-201ENST00000331920 SYAP1Q96A49 352 aaPredicted RBP20.65■□□□□ 0.9
PTCH1-201ENST00000331920 FOXD4L1Q9NU39 408 aa20.64■□□□□ 0.9
PTCH1-201ENST00000331920 USP35Q9P2H5 1018 aa20.64■□□□□ 0.89
PTCH1-201ENST00000331920 FOXD4L5Q5VV16 416 aaPredicted RBP20.62■□□□□ 0.89
PTCH1-201ENST00000331920 FOXD4L4Q8WXT5 416 aaPredicted RBP20.62■□□□□ 0.89
PTCH1-201ENST00000331920 TPD52L1Q16890 204 aaPredicted RBP20.62■□□□□ 0.89
PTCH1-201ENST00000331920 RRP12Q5JTH9 1297 aaKnown RBP20.61■□□□□ 0.89
PTCH1-201ENST00000331920 TRIM6-TRIM34B2RNG4 842 aa20.61■□□□□ 0.89
PTCH1-201ENST00000331920 CCDC34Q96HJ3 373 aa20.59■□□□□ 0.89
PTCH1-201ENST00000331920 SAFB2Q14151 953 aaKnown RBP eCLIP20.59■□□□□ 0.89
PTCH1-201ENST00000331920 PAK3O75914 559 aaPredicted RBP20.57■□□□□ 0.88
PTCH1-201ENST00000331920 TOMM22Q9NS69 142 aa20.57■□□□□ 0.88
PTCH1-201ENST00000331920 CHMP7Q8WUX9 453 aaPredicted RBP20.55■□□□□ 0.88
PTCH1-201ENST00000331920 CCDC9Q9Y3X0 531 aaKnown RBP20.55■□□□□ 0.88
PTCH1-201ENST00000331920 TSR1Q2NL82 804 aaKnown RBP20.54■□□□□ 0.88
PTCH1-201ENST00000331920 SRPK2P78362 688 aaKnown RBP20.53■□□□□ 0.88
PTCH1-201ENST00000331920 ZNF771Q7L3S4 317 aaPredicted RBP20.53■□□□□ 0.88
PTCH1-201ENST00000331920 GOLGA6L3A6NEY3 463 aa20.52■□□□□ 0.88
PTCH1-201ENST00000331920 ITPRIPQ8IWB1 547 aa20.52■□□□□ 0.88
PTCH1-201ENST00000331920 FRAT2O75474 233 aaPredicted RBP20.52■□□□□ 0.88
PTCH1-201ENST00000331920 MFAP1P55081 439 aaKnown RBP20.51■□□□□ 0.87
PTCH1-201ENST00000331920 CFAP44Q96MT7 982 aa20.51■□□□□ 0.87
PTCH1-201ENST00000331920 RAD21O60216 631 aa20.51■□□□□ 0.87
PTCH1-201ENST00000331920 TCEAL9Q9UHQ7 104 aa20.51■□□□□ 0.87
PTCH1-201ENST00000331920 CSB-PGBD3P0DP91 1061 aa20.5■□□□□ 0.87
PTCH1-201ENST00000331920 GPATCH3Q96I76 525 aa20.5■□□□□ 0.87
PTCH1-201ENST00000331920 SF3A1Q15459 793 aaKnown RBP20.5■□□□□ 0.87
PTCH1-201ENST00000331920 HSP90AA2PQ14568 343 aaPredicted RBP20.49■□□□□ 0.87
PTCH1-201ENST00000331920 FOXD4L6Q3SYB3 417 aaPredicted RBP20.49■□□□□ 0.87
PTCH1-201ENST00000331920 FOXD4L3Q6VB84 417 aaPredicted RBP20.49■□□□□ 0.87
PTCH1-201ENST00000331920 ZNF592Q92610 1267 aa20.49■□□□□ 0.87
PTCH1-201ENST00000331920 CALD1Q05682 793 aaKnown RBP20.48■□□□□ 0.87
PTCH1-201ENST00000331920 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.47■□□□□ 0.876e-10■■■■■ 141.3
PTCH1-201ENST00000331920 CSPP1Q1MSJ5 1256 aa20.47■□□□□ 0.87
PTCH1-201ENST00000331920 PCMTD1Q96MG8 357 aaPredicted RBP20.46■□□□□ 0.87
PTCH1-201ENST00000331920 CCDC70Q6NSX1 233 aa20.46■□□□□ 0.87
PTCH1-201ENST00000331920 MLECQ14165 292 aa20.46■□□□□ 0.87
PTCH1-201ENST00000331920 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.44■□□□□ 0.86
PTCH1-201ENST00000331920 BCL11BQ9C0K0 894 aaPredicted RBP20.43■□□□□ 0.86
PTCH1-201ENST00000331920 TPM2P07951 284 aa20.43■□□□□ 0.86
PTCH1-201ENST00000331920 PHF14O94880 888 aa20.43■□□□□ 0.86
PTCH1-201ENST00000331920 MORC1Q86VD1 984 aa20.42■□□□□ 0.86
PTCH1-201ENST00000331920 H3BQV1 296 aa20.42■□□□□ 0.86
PTCH1-201ENST00000331920 IFFO2Q5TF58 517 aa20.42■□□□□ 0.86
PTCH1-201ENST00000331920 STK26Q9P289 416 aa20.4■□□□□ 0.86
PTCH1-201ENST00000331920 GPS2Q13227 327 aa20.4■□□□□ 0.86
PTCH1-201ENST00000331920 SLC4A10Q6U841 1118 aa20.39■□□□□ 0.85
PTCH1-201ENST00000331920 KIF16BQ96L93 1317 aa20.39■□□□□ 0.85
PTCH1-201ENST00000331920 GOLGA6L19H0YKK7 550 aa20.39■□□□□ 0.85
PTCH1-201ENST00000331920 VSIG10Q8N0Z9 540 aa20.39■□□□□ 0.85
PTCH1-201ENST00000331920 IPO8O15397 1037 aaKnown RBP20.37■□□□□ 0.85
PTCH1-201ENST00000331920 MAP7D2Q96T17 732 aa20.37■□□□□ 0.85
PTCH1-201ENST00000331920 TPM1P09493 284 aa20.37■□□□□ 0.85
PTCH1-201ENST00000331920 TRHP20396 242 aaPredicted RBP20.36■□□□□ 0.85
PTCH1-201ENST00000331920 GTF2E1P29083 439 aaPredicted RBP20.35■□□□□ 0.85
PTCH1-201ENST00000331920 RBM19Q9Y4C8 960 aaKnown RBP20.35■□□□□ 0.85
PTCH1-201ENST00000331920 CTDP1Q9Y5B0 961 aaPredicted RBP20.34■□□□□ 0.85
PTCH1-201ENST00000331920 PLEKHD1A6NEE1 506 aa20.34■□□□□ 0.85
PTCH1-201ENST00000331920 MCTP1Q6DN14 999 aa20.32■□□□□ 0.84
PTCH1-201ENST00000331920 TMF1P82094 1093 aa20.32■□□□□ 0.84
PTCH1-201ENST00000331920 PLCD4Q9BRC7 762 aa20.32■□□□□ 0.84
PTCH1-201ENST00000331920 AKAP17AQ02040 695 aaKnown RBP20.32■□□□□ 0.84
PTCH1-201ENST00000331920 NAP1L1P55209 391 aaKnown RBP20.31■□□□□ 0.84
PTCH1-201ENST00000331920 FBXW7Q969H0 707 aa20.31■□□□□ 0.84
PTCH1-201ENST00000331920 FAM184AQ8NB25 1140 aa20.31■□□□□ 0.84
PTCH1-201ENST00000331920 TRIM34Q9BYJ4 488 aa20.31■□□□□ 0.84
PTCH1-201ENST00000331920 BECN2A8MW95 431 aa20.3■□□□□ 0.84
PTCH1-201ENST00000331920 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.3■□□□□ 0.84
PTCH1-201ENST00000331920 SAMD1Q6SPF0 538 aaPredicted RBP20.3■□□□□ 0.84
PTCH1-201ENST00000331920 SKIDA1Q1XH10 827 aa20.29■□□□□ 0.84
PTCH1-201ENST00000331920 RWDD1Q9H446 243 aaPredicted RBP20.29■□□□□ 0.84
PTCH1-201ENST00000331920 ODF2Q5BJF6 829 aa20.29■□□□□ 0.84
PTCH1-201ENST00000331920 RUFY1Q96T51 708 aa20.29■□□□□ 0.84
PTCH1-201ENST00000331920 TEX35Q5T0J7 233 aa20.28■□□□□ 0.84
PTCH1-201ENST00000331920 DCAF11Q8TEB1 546 aa20.28■□□□□ 0.84
PTCH1-201ENST00000331920 CWC22Q9HCG8 908 aaKnown RBP20.28■□□□□ 0.84
PTCH1-201ENST00000331920 MSH5O43196 834 aa20.27■□□□□ 0.84
PTCH1-201ENST00000331920 CFDP1Q9UEE9 299 aaPredicted RBP20.27■□□□□ 0.84
PTCH1-201ENST00000331920 CT47A1Q5JQC4 288 aaPredicted RBP20.27■□□□□ 0.84
PTCH1-201ENST00000331920 STK31Q9BXU1 1019 aa20.27■□□□□ 0.84
PTCH1-201ENST00000331920 APPP05067 770 aa20.27■□□□□ 0.83
PTCH1-201ENST00000331920 ZFYVE27Q5T4F4 411 aa20.26■□□□□ 0.83
PTCH1-201ENST00000331920 HOMER1Q86YM7 354 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms