RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 DDX10Q13206 875 aaKnown RBP21.22■□□□□ 0.99
CLCNKA-201ENST00000331433 DNMT1P26358 1616 aaKnown RBP21.22■□□□□ 0.99
CLCNKA-201ENST00000331433 KIF14Q15058 1648 aa21.2■□□□□ 0.98
CLCNKA-201ENST00000331433 ROCK1Q13464 1354 aa21.19■□□□□ 0.98
CLCNKA-201ENST00000331433 MPHOSPH9Q99550 1183 aa21.18■□□□□ 0.98
CLCNKA-201ENST00000331433 KDM5BQ9UGL1 1544 aa21.18■□□□□ 0.98
CLCNKA-201ENST00000331433 CFDP1Q9UEE9 299 aaPredicted RBP21.17■□□□□ 0.98
CLCNKA-201ENST00000331433 CAMSAP2Q08AD1 1489 aa21.16■□□□□ 0.98
CLCNKA-201ENST00000331433 GPATCH8Q9UKJ3 1502 aaKnown RBP21.16■□□□□ 0.98
CLCNKA-201ENST00000331433 FOXD1Q16676 465 aa21.15■□□□□ 0.98
CLCNKA-201ENST00000331433 ADCY10Q96PN6 1610 aa21.14■□□□□ 0.97
CLCNKA-201ENST00000331433 KCNH8Q96L42 1107 aa21.14■□□□□ 0.97
CLCNKA-201ENST00000331433 ZNF777Q9ULD5 760 aaPredicted RBP21.14■□□□□ 0.97
CLCNKA-201ENST00000331433 ITSN2Q9NZM3 1697 aa21.14■□□□□ 0.97
CLCNKA-201ENST00000331433 ABCA8O94911 1581 aa21.13■□□□□ 0.97
CLCNKA-201ENST00000331433 ATP10BO94823 1461 aa21.09■□□□□ 0.97
CLCNKA-201ENST00000331433 PLEKHD1A6NEE1 506 aa21.09■□□□□ 0.97
CLCNKA-201ENST00000331433 NCOA1Q15788 1441 aa21.05■□□□□ 0.96
CLCNKA-201ENST00000331433 CHD1O14646 1710 aa21.04■□□□□ 0.96
CLCNKA-201ENST00000331433 SLC4A1APQ9BWU0 796 aaKnown RBP21.04■□□□□ 0.96
CLCNKA-201ENST00000331433 CDC42BPAQ5VT25 1732 aa21.03■□□□□ 0.96
CLCNKA-201ENST00000331433 ANKRD30BQ9BXX2 1392 aa21.03■□□□□ 0.96
CLCNKA-201ENST00000331433 PTPRGP23470 1445 aa21.03■□□□□ 0.96
CLCNKA-201ENST00000331433 L3MBTL2Q969R5 705 aa21.03■□□□□ 0.96
CLCNKA-201ENST00000331433 ABCC10Q5T3U5 1492 aa21.03■□□□□ 0.96
CLCNKA-201ENST00000331433 ADGBQ8N7X0 1667 aa21.02■□□□□ 0.96
CLCNKA-201ENST00000331433 CROCC2H7BZ55 1655 aa21.01■□□□□ 0.95
CLCNKA-201ENST00000331433 ADGRL2O95490 1459 aa20.99■□□□□ 0.95
CLCNKA-201ENST00000331433 PZPP20742 1482 aa20.98■□□□□ 0.95
CLCNKA-201ENST00000331433 RPRD2Q5VT52 1461 aaKnown RBP20.98■□□□□ 0.95
CLCNKA-201ENST00000331433 HSPA5P11021 654 aaKnown RBP20.97■□□□□ 0.95
CLCNKA-201ENST00000331433 ANKRD30AQ9BXX3 1397 aa20.97■□□□□ 0.95
CLCNKA-201ENST00000331433 ANP32CO43423 234 aa20.96■□□□□ 0.95
CLCNKA-201ENST00000331433 TEX14Q8IWB6 1497 aa20.93■□□□□ 0.94
CLCNKA-201ENST00000331433 C9orf84Q5VXU9 1444 aa20.92■□□□□ 0.94
CLCNKA-201ENST00000331433 ANKRD50Q9ULJ7 1429 aa20.92■□□□□ 0.94
CLCNKA-201ENST00000331433 EIF4G2P78344 907 aaKnown RBP eCLIP20.9■□□□□ 0.94
CLCNKA-201ENST00000331433 NBPF8Q3BBV2 869 aa20.9■□□□□ 0.94
CLCNKA-201ENST00000331433 SHROOM2Q13796 1616 aa20.9■□□□□ 0.94
CLCNKA-201ENST00000331433 HNRNPMP52272 730 aaKnown RBP eCLIP20.89■□□□□ 0.94
CLCNKA-201ENST00000331433 WASHC2AQ641Q2 1341 aa20.89■□□□□ 0.94
CLCNKA-201ENST00000331433 SHANK2Q9UPX8 1470 aa20.89■□□□□ 0.93
CLCNKA-201ENST00000331433 ERCC6L2Q5T890 1561 aa20.88■□□□□ 0.93
CLCNKA-201ENST00000331433 CCER2I3L3R5 266 aa20.88■□□□□ 0.93
CLCNKA-201ENST00000331433 TSPY4P0CV99 314 aa20.87■□□□□ 0.93
CLCNKA-201ENST00000331433 TSPY10P0CW01 314 aa20.87■□□□□ 0.93
CLCNKA-201ENST00000331433 PKD2Q13563 968 aa20.87■□□□□ 0.93
CLCNKA-201ENST00000331433 KIAA1107Q9UPP5 1409 aa20.87■□□□□ 0.93
CLCNKA-201ENST00000331433 CDC42BPBQ9Y5S2 1711 aa20.84■□□□□ 0.93
CLCNKA-201ENST00000331433 MBD5Q9P267 1494 aa20.84■□□□□ 0.93
CLCNKA-201ENST00000331433 SAMD9LQ8IVG5 1584 aa20.83■□□□□ 0.93
CLCNKA-201ENST00000331433 PREX2Q70Z35 1606 aa20.82■□□□□ 0.92
CLCNKA-201ENST00000331433 NUP155O75694 1391 aa20.82■□□□□ 0.92
CLCNKA-201ENST00000331433 KIF15Q9NS87 1388 aa20.82■□□□□ 0.92
CLCNKA-201ENST00000331433 ARHGEF5Q12774 1597 aa20.81■□□□□ 0.92
CLCNKA-201ENST00000331433 PELP1Q8IZL8 1130 aaKnown RBP20.81■□□□□ 0.92
CLCNKA-201ENST00000331433 C11orf95C9JLR9 678 aaPredicted RBP20.8■□□□□ 0.92
CLCNKA-201ENST00000331433 TTC37Q6PGP7 1564 aa20.79■□□□□ 0.92
CLCNKA-201ENST00000331433 ABCC2Q92887 1545 aa20.79■□□□□ 0.92
CLCNKA-201ENST00000331433 CCDC141Q6ZP82 1450 aa20.78■□□□□ 0.92
CLCNKA-201ENST00000331433 SUPT16HQ9Y5B9 1047 aaKnown RBP20.78■□□□□ 0.92
CLCNKA-201ENST00000331433 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.76■□□□□ 0.91
CLCNKA-201ENST00000331433 ARHGAP5Q13017 1502 aa20.75■□□□□ 0.91
CLCNKA-201ENST00000331433 SYCP2Q9BX26 1530 aa20.75■□□□□ 0.91
CLCNKA-201ENST00000331433 CCDC7Q96M83 1385 aa20.75■□□□□ 0.91
CLCNKA-201ENST00000331433 ZNF326Q5BKZ1 582 aaKnown RBP20.75■□□□□ 0.91
CLCNKA-201ENST00000331433 SPATA31E1Q6ZUB1 1445 aa20.74■□□□□ 0.91
CLCNKA-201ENST00000331433 KDM5DQ9BY66 1539 aa20.73■□□□□ 0.91
CLCNKA-201ENST00000331433 CNTLNQ9NXG0 1405 aa20.73■□□□□ 0.91
CLCNKA-201ENST00000331433 CLASP1Q7Z460 1538 aa20.71■□□□□ 0.91
CLCNKA-201ENST00000331433 RSPH4AQ5TD94 716 aa20.7■□□□□ 0.9
CLCNKA-201ENST00000331433 MYO5CQ9NQX4 1742 aa20.68■□□□□ 0.9
CLCNKA-201ENST00000331433 KIF7Q2M1P5 1343 aa20.68■□□□□ 0.9
CLCNKA-201ENST00000331433 ZCCHC11Q5TAX3 1644 aaKnown RBP20.66■□□□□ 0.9
CLCNKA-201ENST00000331433 FAM135AQ9P2D6 1515 aa20.65■□□□□ 0.9
CLCNKA-201ENST00000331433 USP47Q96K76 1375 aa20.64■□□□□ 0.89
CLCNKA-201ENST00000331433 MAST1Q9Y2H9 1570 aa20.63■□□□□ 0.89
CLCNKA-201ENST00000331433 POLR1AO95602 1720 aaPredicted RBP20.63■□□□□ 0.89
CLCNKA-201ENST00000331433 ARHGEF12Q9NZN5 1544 aa20.62■□□□□ 0.89
CLCNKA-201ENST00000331433 UHRF1BP1LA0JNW5 1464 aa20.61■□□□□ 0.89
CLCNKA-201ENST00000331433 UHRF1BP1Q6BDS2 1440 aa20.61■□□□□ 0.89
CLCNKA-201ENST00000331433 KDM2AQ9Y2K7 1162 aa20.61■□□□□ 0.89
CLCNKA-201ENST00000331433 PLEKHH2Q8IVE3 1493 aa20.6■□□□□ 0.89
CLCNKA-201ENST00000331433 CCDC184Q52MB2 194 aa20.6■□□□□ 0.89
CLCNKA-201ENST00000331433 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.6■□□□□ 0.89
CLCNKA-201ENST00000331433 PRKRIP1Q9H875 184 aaPredicted RBP20.6■□□□□ 0.89
CLCNKA-201ENST00000331433 PLCH2O75038 1416 aa20.59■□□□□ 0.89
CLCNKA-201ENST00000331433 KDM5CP41229 1560 aa20.58■□□□□ 0.89
CLCNKA-201ENST00000331433 BCORL1Q5H9F3 1711 aa20.58■□□□□ 0.89
CLCNKA-201ENST00000331433 RALGAPBQ86X10 1494 aa20.58■□□□□ 0.88
CLCNKA-201ENST00000331433 HNRNPUQ00839 825 aaKnown RBP eCLIP20.58■□□□□ 0.88
CLCNKA-201ENST00000331433 DCAF11Q8TEB1 546 aa20.58■□□□□ 0.88
CLCNKA-201ENST00000331433 PLXNC1O60486 1568 aa20.57■□□□□ 0.88
CLCNKA-201ENST00000331433 UNC13BO14795 1591 aa20.57■□□□□ 0.88
CLCNKA-201ENST00000331433 POLR3GLQ9BT43 218 aa20.56■□□□□ 0.88
CLCNKA-201ENST00000331433 EFCAB2Q5VUJ9 269 aa20.55■□□□□ 0.88
CLCNKA-201ENST00000331433 FKBP8Q14318 412 aa20.55■□□□□ 0.88
CLCNKA-201ENST00000331433 CARD11Q9BXL7 1154 aa20.55■□□□□ 0.88
CLCNKA-201ENST00000331433 CCDC144AA2RUR9 1427 aa20.53■□□□□ 0.88
CLCNKA-201ENST00000331433 BCANQ96GW7 911 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms