RNA–Protein interactions for RNA: ENST00000330188.13

TPM3-206, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-206ENST00000330188 PRG4Q92954 1404 aaPredicted RBP20.79■□□□□ 0.92
TPM3-206ENST00000330188 JPH4Q96JJ6 628 aa20.78■□□□□ 0.92
TPM3-206ENST00000330188 ITSN2Q9NZM3 1697 aa20.78■□□□□ 0.92
TPM3-206ENST00000330188 DDX10Q13206 875 aaKnown RBP20.76■□□□□ 0.91
TPM3-206ENST00000330188 TRIM52Q96A61 297 aa20.76■□□□□ 0.91
TPM3-206ENST00000330188 KIF14Q15058 1648 aa20.75■□□□□ 0.91
TPM3-206ENST00000330188 ZNF644Q9H582 1327 aaPredicted RBP20.75■□□□□ 0.91
TPM3-206ENST00000330188 HIRIP3Q9BW71 556 aaPredicted RBP20.74■□□□□ 0.91
TPM3-206ENST00000330188 ABCA8O94911 1581 aa20.73■□□□□ 0.91
TPM3-206ENST00000330188 MPHOSPH9Q99550 1183 aa20.72■□□□□ 0.91
TPM3-206ENST00000330188 CAMSAP2Q08AD1 1489 aa20.72■□□□□ 0.91
TPM3-206ENST00000330188 GPATCH8Q9UKJ3 1502 aaKnown RBP20.71■□□□□ 0.91
TPM3-206ENST00000330188 ADGBQ8N7X0 1667 aa20.68■□□□□ 0.9
TPM3-206ENST00000330188 CROCC2H7BZ55 1655 aa20.68■□□□□ 0.9
TPM3-206ENST00000330188 KCNH8Q96L42 1107 aa20.66■□□□□ 0.9
TPM3-206ENST00000330188 PELP1Q8IZL8 1130 aaKnown RBP20.66■□□□□ 0.9
TPM3-206ENST00000330188 CFDP1Q9UEE9 299 aaPredicted RBP20.66■□□□□ 0.9
TPM3-206ENST00000330188 CDC42BPAQ5VT25 1732 aa20.64■□□□□ 0.89
TPM3-206ENST00000330188 ATP10BO94823 1461 aa20.63■□□□□ 0.89
TPM3-206ENST00000330188 ADGRL2O95490 1459 aa20.62■□□□□ 0.89
TPM3-206ENST00000330188 ANKRD30BQ9BXX2 1392 aa20.62■□□□□ 0.89
TPM3-206ENST00000330188 ABCC10Q5T3U5 1492 aa20.61■□□□□ 0.89
TPM3-206ENST00000330188 FOXD1Q16676 465 aa20.61■□□□□ 0.89
TPM3-206ENST00000330188 NCOA1Q15788 1441 aa20.61■□□□□ 0.89
TPM3-206ENST00000330188 RPRD2Q5VT52 1461 aaKnown RBP20.6■□□□□ 0.89
TPM3-206ENST00000330188 CHD1O14646 1710 aa20.58■□□□□ 0.89
TPM3-206ENST00000330188 PLEKHD1A6NEE1 506 aa20.58■□□□□ 0.89
TPM3-206ENST00000330188 PZPP20742 1482 aa20.57■□□□□ 0.88
TPM3-206ENST00000330188 ZNF777Q9ULD5 760 aaPredicted RBP20.57■□□□□ 0.88
TPM3-206ENST00000330188 L3MBTL2Q969R5 705 aa20.56■□□□□ 0.88
TPM3-206ENST00000330188 TEX14Q8IWB6 1497 aa20.55■□□□□ 0.88
TPM3-206ENST00000330188 CCER2I3L3R5 266 aa20.54■□□□□ 0.88
TPM3-206ENST00000330188 ANP32CO43423 234 aa20.54■□□□□ 0.88
TPM3-206ENST00000330188 SLC4A1APQ9BWU0 796 aaKnown RBP20.54■□□□□ 0.88
TPM3-206ENST00000330188 PTPRGP23470 1445 aa20.53■□□□□ 0.88
TPM3-206ENST00000330188 HSPA5P11021 654 aaKnown RBP20.53■□□□□ 0.88
TPM3-206ENST00000330188 ANKRD30AQ9BXX3 1397 aa20.52■□□□□ 0.88
TPM3-206ENST00000330188 SHANK2Q9UPX8 1470 aa20.52■□□□□ 0.88
TPM3-206ENST00000330188 SHROOM2Q13796 1616 aa20.5■□□□□ 0.87
TPM3-206ENST00000330188 EIF4G2P78344 907 aaKnown RBP eCLIP20.48■□□□□ 0.87
TPM3-206ENST00000330188 WASHC2AQ641Q2 1341 aa20.47■□□□□ 0.87
TPM3-206ENST00000330188 C9orf84Q5VXU9 1444 aa20.46■□□□□ 0.87
TPM3-206ENST00000330188 ANKRD50Q9ULJ7 1429 aa20.46■□□□□ 0.87
TPM3-206ENST00000330188 KIAA1107Q9UPP5 1409 aa20.46■□□□□ 0.87
TPM3-206ENST00000330188 ARHGEF5Q12774 1597 aa20.45■□□□□ 0.86
TPM3-206ENST00000330188 NBPF8Q3BBV2 869 aa20.45■□□□□ 0.86
TPM3-206ENST00000330188 PREX2Q70Z35 1606 aa20.44■□□□□ 0.86
TPM3-206ENST00000330188 CDC42BPBQ9Y5S2 1711 aa20.44■□□□□ 0.86
TPM3-206ENST00000330188 SUPT16HQ9Y5B9 1047 aaKnown RBP20.42■□□□□ 0.86
TPM3-206ENST00000330188 SAMD9LQ8IVG5 1584 aa20.41■□□□□ 0.86
TPM3-206ENST00000330188 MBD5Q9P267 1494 aa20.41■□□□□ 0.86
TPM3-206ENST00000330188 KDM5DQ9BY66 1539 aa20.4■□□□□ 0.86
TPM3-206ENST00000330188 PKD2Q13563 968 aa20.38■□□□□ 0.85
TPM3-206ENST00000330188 POLR1AO95602 1720 aaPredicted RBP20.38■□□□□ 0.85
TPM3-206ENST00000330188 ERCC6L2Q5T890 1561 aa20.38■□□□□ 0.85
TPM3-206ENST00000330188 SPATA31E1Q6ZUB1 1445 aa20.37■□□□□ 0.85
TPM3-206ENST00000330188 TSPY4P0CV99 314 aa20.37■□□□□ 0.85
TPM3-206ENST00000330188 TSPY10P0CW01 314 aa20.37■□□□□ 0.85
TPM3-206ENST00000330188 CNTLNQ9NXG0 1405 aa20.37■□□□□ 0.85
TPM3-206ENST00000330188 HNRNPMP52272 730 aaKnown RBP eCLIP20.36■□□□□ 0.857e-7■■■□□ 16.5
TPM3-206ENST00000330188 CCDC141Q6ZP82 1450 aa20.36■□□□□ 0.85
TPM3-206ENST00000330188 CCDC7Q96M83 1385 aa20.35■□□□□ 0.85
TPM3-206ENST00000330188 KIF15Q9NS87 1388 aa20.35■□□□□ 0.85
TPM3-206ENST00000330188 ABCC2Q92887 1545 aa20.35■□□□□ 0.85
TPM3-206ENST00000330188 TTC37Q6PGP7 1564 aa20.35■□□□□ 0.85
TPM3-206ENST00000330188 C11orf95C9JLR9 678 aaPredicted RBP20.35■□□□□ 0.85
TPM3-206ENST00000330188 NUP155O75694 1391 aa20.34■□□□□ 0.85
TPM3-206ENST00000330188 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.33■□□□□ 0.843e-7■□□□□ 8.5
TPM3-206ENST00000330188 SYCP2Q9BX26 1530 aa20.3■□□□□ 0.84
TPM3-206ENST00000330188 MYO5CQ9NQX4 1742 aa20.29■□□□□ 0.84
TPM3-206ENST00000330188 MAST1Q9Y2H9 1570 aa20.29■□□□□ 0.84
TPM3-206ENST00000330188 ARHGAP5Q13017 1502 aa20.29■□□□□ 0.84
TPM3-206ENST00000330188 RSPH4AQ5TD94 716 aa20.29■□□□□ 0.84
TPM3-206ENST00000330188 CLASP1Q7Z460 1538 aa20.28■□□□□ 0.84
TPM3-206ENST00000330188 UHRF1BP1Q6BDS2 1440 aa20.26■□□□□ 0.83
TPM3-206ENST00000330188 KIF7Q2M1P5 1343 aa20.25■□□□□ 0.83
TPM3-206ENST00000330188 ARHGEF12Q9NZN5 1544 aa20.25■□□□□ 0.83
TPM3-206ENST00000330188 KDM5CP41229 1560 aa20.24■□□□□ 0.83
TPM3-206ENST00000330188 FAM135AQ9P2D6 1515 aa20.24■□□□□ 0.83
TPM3-206ENST00000330188 ZCCHC11Q5TAX3 1644 aaKnown RBP20.23■□□□□ 0.83
TPM3-206ENST00000330188 BCORL1Q5H9F3 1711 aa20.22■□□□□ 0.83
TPM3-206ENST00000330188 UNC13BO14795 1591 aa20.22■□□□□ 0.83
TPM3-206ENST00000330188 RALGAPBQ86X10 1494 aa20.22■□□□□ 0.83
TPM3-206ENST00000330188 PLXNC1O60486 1568 aa20.22■□□□□ 0.83
TPM3-206ENST00000330188 USP47Q96K76 1375 aa20.21■□□□□ 0.83
TPM3-206ENST00000330188 PLEKHH2Q8IVE3 1493 aa20.21■□□□□ 0.83
TPM3-206ENST00000330188 UHRF1BP1LA0JNW5 1464 aa20.2■□□□□ 0.82
TPM3-206ENST00000330188 ZNF326Q5BKZ1 582 aaKnown RBP20.2■□□□□ 0.82
TPM3-206ENST00000330188 PRKRIP1Q9H875 184 aaPredicted RBP20.2■□□□□ 0.82
TPM3-206ENST00000330188 CCDC184Q52MB2 194 aa20.15■□□□□ 0.82
TPM3-206ENST00000330188 FKBP8Q14318 412 aa20.15■□□□□ 0.82
TPM3-206ENST00000330188 PLCH2O75038 1416 aa20.14■□□□□ 0.82
TPM3-206ENST00000330188 HNRNPUQ00839 825 aaKnown RBP eCLIP20.14■□□□□ 0.81
TPM3-206ENST00000330188 IQGAP3Q86VI3 1631 aa20.14■□□□□ 0.81
TPM3-206ENST00000330188 DUOX2Q9NRD8 1548 aa20.12■□□□□ 0.81
TPM3-206ENST00000330188 ABCC1P33527 1531 aa20.11■□□□□ 0.81
TPM3-206ENST00000330188 ARID4BQ4LE39 1312 aaPredicted RBP20.11■□□□□ 0.81
TPM3-206ENST00000330188 DHX29Q7Z478 1369 aaKnown RBP20.1■□□□□ 0.81
TPM3-206ENST00000330188 MAGI2Q86UL8 1455 aa20.09■□□□□ 0.81
TPM3-206ENST00000330188 NEFLP07196 543 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms