RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 HDAC5Q9UQL6 1122 aa17.88■□□□□ 0.45
COL7A1-201ENST00000328333 TPRNQ4KMQ1 711 aa17.88■□□□□ 0.45
COL7A1-201ENST00000328333 GPATCH3Q96I76 525 aa17.88■□□□□ 0.45
COL7A1-201ENST00000328333 TPM3P06753 285 aa17.87■□□□□ 0.45
COL7A1-201ENST00000328333 TNIKQ9UKE5 1360 aa17.87■□□□□ 0.45
COL7A1-201ENST00000328333 RB1CC1Q8TDY2 1594 aa17.87■□□□□ 0.45
COL7A1-201ENST00000328333 MAP7D2Q96T17 732 aa17.86■□□□□ 0.45
COL7A1-201ENST00000328333 KIF16BQ96L93 1317 aa17.86■□□□□ 0.45
COL7A1-201ENST00000328333 NAP1L2Q9ULW6 460 aaPredicted RBP17.85■□□□□ 0.45
COL7A1-201ENST00000328333 PMFBP1Q8TBY8 1022 aa17.85■□□□□ 0.45
COL7A1-201ENST00000328333 EIF3AQ14152 1382 aaKnown RBP17.84■□□□□ 0.45
COL7A1-201ENST00000328333 KIF27Q86VH2 1401 aa17.84■□□□□ 0.45
COL7A1-201ENST00000328333 ROCK2O75116 1388 aaKnown RBP17.83■□□□□ 0.44
COL7A1-201ENST00000328333 ST18O60284 1047 aa17.83■□□□□ 0.44
COL7A1-201ENST00000328333 CCNB3Q8WWL7 1395 aa17.82■□□□□ 0.44
COL7A1-201ENST00000328333 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.82■□□□□ 0.44
COL7A1-201ENST00000328333 RALBP1Q15311 655 aa17.81■□□□□ 0.44
COL7A1-201ENST00000328333 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.81■□□□□ 0.44
COL7A1-201ENST00000328333 TMF1P82094 1093 aa17.8■□□□□ 0.44
COL7A1-201ENST00000328333 PABPN1Q86U42 306 aaKnown RBP eCLIP17.79■□□□□ 0.448e-7■■■■□ 25.2
COL7A1-201ENST00000328333 BAZ1AQ9NRL2 1556 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-201ENST00000328333 KANK1Q14678 1352 aa17.78■□□□□ 0.44
COL7A1-201ENST00000328333 KAT6BQ8WYB5 2073 aa17.78■□□□□ 0.44
COL7A1-201ENST00000328333 ARHGAP35Q9NRY4 1499 aa17.78■□□□□ 0.44
COL7A1-201ENST00000328333 TULP1O00294 542 aaPredicted RBP17.78■□□□□ 0.44
COL7A1-201ENST00000328333 TPM1P09493 284 aa17.77■□□□□ 0.44
COL7A1-201ENST00000328333 TSR1Q2NL82 804 aaKnown RBP17.77■□□□□ 0.43
COL7A1-201ENST00000328333 RCAN3Q9UKA8 241 aa17.76■□□□□ 0.43
COL7A1-201ENST00000328333 CLSTN1O94985 981 aa17.76■□□□□ 0.43
COL7A1-201ENST00000328333 CWC15Q9P013 229 aaKnown RBP17.76■□□□□ 0.43
COL7A1-201ENST00000328333 GSE1Q14687 1217 aa17.76■□□□□ 0.43
COL7A1-201ENST00000328333 GZF1Q9H116 711 aaPredicted RBP17.76■□□□□ 0.43
COL7A1-201ENST00000328333 HMMRO75330 724 aa17.76■□□□□ 0.43
COL7A1-201ENST00000328333 PDE3BQ13370 1112 aa17.75■□□□□ 0.43
COL7A1-201ENST00000328333 C14orf37Q86TY3 774 aa17.75■□□□□ 0.43
COL7A1-201ENST00000328333 RRP7BPQ9NSQ0 103 aa17.74■□□□□ 0.43
COL7A1-201ENST00000328333 ZNF771Q7L3S4 317 aaPredicted RBP17.74■□□□□ 0.43
COL7A1-201ENST00000328333 HIRIP3Q9BW71 556 aaPredicted RBP17.74■□□□□ 0.43
COL7A1-201ENST00000328333 SLKQ9H2G2 1235 aaPredicted RBP17.73■□□□□ 0.43
COL7A1-201ENST00000328333 MYO15BQ96JP2 1530 aa17.73■□□□□ 0.43
COL7A1-201ENST00000328333 ACBD3Q9H3P7 528 aa17.73■□□□□ 0.43
COL7A1-201ENST00000328333 CEP89Q96ST8 783 aa17.72■□□□□ 0.43
COL7A1-201ENST00000328333 A0A0G2JS52 829 aa17.71■□□□□ 0.43
COL7A1-201ENST00000328333 FANCIQ9NVI1 1328 aa17.71■□□□□ 0.42
COL7A1-201ENST00000328333 CCDC66A2RUB6 948 aa17.7■□□□□ 0.42
COL7A1-201ENST00000328333 SETD5Q9C0A6 1442 aa17.7■□□□□ 0.42
COL7A1-201ENST00000328333 CDR1P51861 262 aa17.7■□□□□ 0.42
COL7A1-201ENST00000328333 ARGLU1Q9NWB6 273 aaPredicted RBP17.7■□□□□ 0.42
COL7A1-201ENST00000328333 VSIG10Q8N0Z9 540 aa17.7■□□□□ 0.42
COL7A1-201ENST00000328333 WRNQ14191 1432 aaPredicted RBP eCLIP17.69■□□□□ 0.421e-6■■■■■ 58.5
COL7A1-201ENST00000328333 GOLGA6L19H0YKK7 550 aa17.69■□□□□ 0.42
COL7A1-201ENST00000328333 PLEKHD1A6NEE1 506 aa17.68■□□□□ 0.42
COL7A1-201ENST00000328333 NEUROD2Q15784 382 aa17.68■□□□□ 0.42
COL7A1-201ENST00000328333 NPHP1O15259 732 aa17.68■□□□□ 0.42
COL7A1-201ENST00000328333 ARID3AQ99856 593 aa17.68■□□□□ 0.42
COL7A1-201ENST00000328333 CFDP1Q9UEE9 299 aaPredicted RBP17.67■□□□□ 0.42
COL7A1-201ENST00000328333 RRP12Q5JTH9 1297 aaKnown RBP17.67■□□□□ 0.42
COL7A1-201ENST00000328333 NACADO15069 1562 aa17.67■□□□□ 0.42
COL7A1-201ENST00000328333 TPM2P07951 284 aa17.67■□□□□ 0.42
COL7A1-201ENST00000328333 IPO7O95373 1038 aaKnown RBP17.66■□□□□ 0.42
COL7A1-201ENST00000328333 SPRYD3Q8NCJ5 442 aa17.65■□□□□ 0.42
COL7A1-201ENST00000328333 AK7Q96M32 723 aa17.64■□□□□ 0.42
COL7A1-201ENST00000328333 TAF3Q5VWG9 929 aa17.64■□□□□ 0.41
COL7A1-201ENST00000328333 POGKQ9P215 609 aa17.64■□□□□ 0.41
COL7A1-201ENST00000328333 DCTN1Q14203 1278 aa17.64■□□□□ 0.41
COL7A1-201ENST00000328333 HOOK1Q9UJC3 728 aaKnown RBP17.63■□□□□ 0.41
COL7A1-201ENST00000328333 CENPQQ7L2Z9 268 aaPredicted RBP17.63■□□□□ 0.41
COL7A1-201ENST00000328333 RTF1Q92541 710 aaKnown RBP17.62■□□□□ 0.41
COL7A1-201ENST00000328333 SPAG9O60271 1321 aaKnown RBP17.62■□□□□ 0.41
COL7A1-201ENST00000328333 U2SURPO15042 1029 aaKnown RBP17.62■□□□□ 0.41
COL7A1-201ENST00000328333 ITPRIPQ8IWB1 547 aa17.62■□□□□ 0.41
COL7A1-201ENST00000328333 HSP90B2PQ58FF3 399 aa17.61■□□□□ 0.41
COL7A1-201ENST00000328333 ANKRD20A12PQ8NF67 263 aa17.61■□□□□ 0.41
COL7A1-201ENST00000328333 CC2D1BQ5T0F9 858 aaKnown RBP17.61■□□□□ 0.41
COL7A1-201ENST00000328333 VPS8Q8N3P4 1428 aa17.6■□□□□ 0.41
COL7A1-201ENST00000328333 TSHZ2Q9NRE2 1034 aa17.6■□□□□ 0.41
COL7A1-201ENST00000328333 DHX8Q14562 1220 aaKnown RBP17.59■□□□□ 0.41
COL7A1-201ENST00000328333 CCDC191Q8NCU4 936 aa17.59■□□□□ 0.41
COL7A1-201ENST00000328333 BAZ1BQ9UIG0 1483 aaKnown RBP17.59■□□□□ 0.41
COL7A1-201ENST00000328333 FAM43AQ8N2R8 423 aa17.59■□□□□ 0.41
COL7A1-201ENST00000328333 FAM161AQ3B820 660 aa17.58■□□□□ 0.41
COL7A1-201ENST00000328333 MORC1Q86VD1 984 aa17.58■□□□□ 0.41
COL7A1-201ENST00000328333 DIAPH3Q9NSV4 1193 aa17.58■□□□□ 0.41
COL7A1-201ENST00000328333 CHMP7Q8WUX9 453 aaPredicted RBP17.58■□□□□ 0.41
COL7A1-201ENST00000328333 HDGFP51858 240 aaKnown RBP17.58■□□□□ 0.4
COL7A1-201ENST00000328333 BECN2A8MW95 431 aa17.58■□□□□ 0.4
COL7A1-201ENST00000328333 AAMPQ13685 434 aa17.58■□□□□ 0.4
COL7A1-201ENST00000328333 PLPPR3Q6T4P5 718 aa17.57■□□□□ 0.4
COL7A1-201ENST00000328333 APPP05067 770 aa17.57■□□□□ 0.4
COL7A1-201ENST00000328333 HSP90B1P14625 803 aaKnown RBP17.57■□□□□ 0.4
COL7A1-201ENST00000328333 LMOD3Q0VAK6 560 aa17.57■□□□□ 0.4
COL7A1-201ENST00000328333 RUFY1Q96T51 708 aa17.57■□□□□ 0.4
COL7A1-201ENST00000328333 HMGN5P82970 282 aaKnown RBP17.57■□□□□ 0.4
COL7A1-201ENST00000328333 ZBTB7CA1YPR0 619 aa17.57■□□□□ 0.4
COL7A1-201ENST00000328333 RASSF8Q8NHQ8 419 aa17.56■□□□□ 0.4
COL7A1-201ENST00000328333 LRRFIP1Q32MZ4 808 aaKnown RBP17.56■□□□□ 0.4
COL7A1-201ENST00000328333 RGL3Q3MIN7 710 aa17.56■□□□□ 0.4
COL7A1-201ENST00000328333 REC8O95072 547 aa17.56■□□□□ 0.4
COL7A1-201ENST00000328333 TAOK2Q9UL54 1235 aa17.55■□□□□ 0.4
COL7A1-201ENST00000328333 MFAP1P55081 439 aaKnown RBP17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms