RNA–Protein interactions for RNA: ENST00000327554.2

CCDC60-201, Transcript of coiled-coil domain containing 60, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC60, Length 2,450 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-201ENST00000327554 ARHGEF11O15085 1522 aa17.21■□□□□ 0.35
CCDC60-201ENST00000327554 EHBP1L1Q8N3D4 1523 aa17.21■□□□□ 0.35
CCDC60-201ENST00000327554 DHX29Q7Z478 1369 aaKnown RBP17.21■□□□□ 0.34
CCDC60-201ENST00000327554 NBPF8Q3BBV2 869 aa17.21■□□□□ 0.34
CCDC60-201ENST00000327554 TEX14Q8IWB6 1497 aa17.19■□□□□ 0.34
CCDC60-201ENST00000327554 NEFMP07197 916 aa17.19■□□□□ 0.34
CCDC60-201ENST00000327554 CC2D2AQ9P2K1 1620 aa17.19■□□□□ 0.34
CCDC60-201ENST00000327554 GRIN2BQ13224 1484 aa17.19■□□□□ 0.34
CCDC60-201ENST00000327554 TCOF1Q13428 1488 aaKnown RBP17.19■□□□□ 0.34
CCDC60-201ENST00000327554 CUL7Q14999 1698 aa17.18■□□□□ 0.34
CCDC60-201ENST00000327554 THOC2Q8NI27 1593 aaKnown RBP17.18■□□□□ 0.34
CCDC60-201ENST00000327554 LAS1LQ9Y4W2 734 aaKnown RBP17.18■□□□□ 0.34
CCDC60-201ENST00000327554 MPHOSPH9Q99550 1183 aa17.18■□□□□ 0.34
CCDC60-201ENST00000327554 SAMD9Q5K651 1589 aa17.17■□□□□ 0.34
CCDC60-201ENST00000327554 RPRD2Q5VT52 1461 aaKnown RBP17.17■□□□□ 0.34
CCDC60-201ENST00000327554 NPM2Q86SE8 214 aaKnown RBP17.16■□□□□ 0.34
CCDC60-201ENST00000327554 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.16■□□□□ 0.34
CCDC60-201ENST00000327554 CHIC2Q9UKJ5 165 aa17.15■□□□□ 0.34
CCDC60-201ENST00000327554 TCERG1O14776 1098 aaKnown RBP17.14■□□□□ 0.34
CCDC60-201ENST00000327554 MAGI3Q5TCQ9 1506 aa17.14■□□□□ 0.33
CCDC60-201ENST00000327554 BCORL1Q5H9F3 1711 aa17.14■□□□□ 0.33
CCDC60-201ENST00000327554 PDE4AP27815 886 aa17.13■□□□□ 0.33
CCDC60-201ENST00000327554 FOXD1Q16676 465 aa17.13■□□□□ 0.33
CCDC60-201ENST00000327554 ANKRD30BQ9BXX2 1392 aa17.13■□□□□ 0.33
CCDC60-201ENST00000327554 ABCA10Q8WWZ4 1543 aa17.12■□□□□ 0.33
CCDC60-201ENST00000327554 BACH2Q9BYV9 841 aa17.12■□□□□ 0.33
CCDC60-201ENST00000327554 PPM1GO15355 546 aaPredicted RBP17.11■□□□□ 0.33
CCDC60-201ENST00000327554 MIA2Q96PC5 1412 aa17.11■□□□□ 0.33
CCDC60-201ENST00000327554 CADPSQ9ULU8 1353 aa17.11■□□□□ 0.33
CCDC60-201ENST00000327554 PNISRQ8TF01 805 aaKnown RBP17.1■□□□□ 0.33
CCDC60-201ENST00000327554 UBE2Q2Q8WVN8 375 aa17.09■□□□□ 0.33
CCDC60-201ENST00000327554 RAD54L2Q9Y4B4 1467 aa17.09■□□□□ 0.33
CCDC60-201ENST00000327554 SENP3-EIF4A1A0A087X0R7 540 aa17.09■□□□□ 0.33
CCDC60-201ENST00000327554 RRP1P56182 461 aaKnown RBP17.08■□□□□ 0.33
CCDC60-201ENST00000327554 EXOC6Q8TAG9 804 aa17.08■□□□□ 0.33
CCDC60-201ENST00000327554 MS4A1P11836 297 aa17.08■□□□□ 0.32
CCDC60-201ENST00000327554 KIF21AQ7Z4S6 1674 aa17.07■□□□□ 0.32
CCDC60-201ENST00000327554 BRPF3Q9ULD4 1205 aa17.06■□□□□ 0.32
CCDC60-201ENST00000327554 LRPPRCP42704 1394 aaKnown RBP17.05■□□□□ 0.32
CCDC60-201ENST00000327554 CNGB1Q14028 1251 aaPredicted RBP17.05■□□□□ 0.32
CCDC60-201ENST00000327554 DNMBPQ6XZF7 1577 aa17.04■□□□□ 0.32
CCDC60-201ENST00000327554 MBD5Q9P267 1494 aa17.03■□□□□ 0.32
CCDC60-201ENST00000327554 POLA1P09884 1462 aaPredicted RBP17.02■□□□□ 0.32
CCDC60-201ENST00000327554 GSE1Q14687 1217 aa17.02■□□□□ 0.32
CCDC60-201ENST00000327554 KDM5CP41229 1560 aa17.02■□□□□ 0.32
CCDC60-201ENST00000327554 TMC1Q8TDI8 760 aa17.01■□□□□ 0.31
CCDC60-201ENST00000327554 USP47Q96K76 1375 aa17■□□□□ 0.31
CCDC60-201ENST00000327554 RCAN3Q9UKA8 241 aa16.99■□□□□ 0.31
CCDC60-201ENST00000327554 KIF14Q15058 1648 aa16.99■□□□□ 0.31
CCDC60-201ENST00000327554 ARID4BQ4LE39 1312 aaPredicted RBP16.99■□□□□ 0.31
CCDC60-201ENST00000327554 DDRGK1Q96HY6 314 aa16.98■□□□□ 0.31
CCDC60-201ENST00000327554 FANCD2Q9BXW9 1451 aa16.98■□□□□ 0.31
CCDC60-201ENST00000327554 NFKBIBQ15653 356 aa16.97■□□□□ 0.31
CCDC60-201ENST00000327554 POLR3GLQ9BT43 218 aa16.97■□□□□ 0.31
CCDC60-201ENST00000327554 TOPBP1Q92547 1522 aa16.97■□□□□ 0.31
CCDC60-201ENST00000327554 ROCK1Q13464 1354 aa16.96■□□□□ 0.31
CCDC60-201ENST00000327554 BRD4O60885 1362 aaPredicted RBP16.96■□□□□ 0.31
CCDC60-201ENST00000327554 ROCK2O75116 1388 aaKnown RBP16.95■□□□□ 0.3
CCDC60-201ENST00000327554 FRAT1Q92837 279 aaPredicted RBP16.94■□□□□ 0.3
CCDC60-201ENST00000327554 DNMT1P26358 1616 aaKnown RBP16.94■□□□□ 0.3
CCDC60-201ENST00000327554 NESP48681 1621 aa16.94■□□□□ 0.3
CCDC60-201ENST00000327554 DAPK1P53355 1430 aa16.94■□□□□ 0.3
CCDC60-201ENST00000327554 KIF15Q9NS87 1388 aa16.93■□□□□ 0.3
CCDC60-201ENST00000327554 E9PCH4 1651 aa16.93■□□□□ 0.3
CCDC60-201ENST00000327554 SLC4A1APQ9BWU0 796 aaKnown RBP16.93■□□□□ 0.3
CCDC60-201ENST00000327554 PZPP20742 1482 aa16.92■□□□□ 0.3
CCDC60-201ENST00000327554 MYBBP1AQ9BQG0 1328 aaKnown RBP16.91■□□□□ 0.3
CCDC60-201ENST00000327554 EPRSP07814 1512 aaKnown RBP16.91■□□□□ 0.3
CCDC60-201ENST00000327554 SKAP1Q86WV1 359 aa16.91■□□□□ 0.3
CCDC60-201ENST00000327554 KTN1Q86UP2 1357 aaKnown RBP16.9■□□□□ 0.3
CCDC60-201ENST00000327554 ABCC5O15440 1437 aa16.89■□□□□ 0.29
CCDC60-201ENST00000327554 PDE3BQ13370 1112 aa16.89■□□□□ 0.29
CCDC60-201ENST00000327554 CDK13Q14004 1512 aaKnown RBP16.89■□□□□ 0.29
CCDC60-201ENST00000327554 SLC4A3P48751 1232 aa16.87■□□□□ 0.29
CCDC60-201ENST00000327554 EIF5BO60841 1220 aaKnown RBP16.87■□□□□ 0.29
CCDC60-201ENST00000327554 RALBP1Q15311 655 aa16.87■□□□□ 0.29
CCDC60-201ENST00000327554 RALGAPBQ86X10 1494 aa16.86■□□□□ 0.29
CCDC60-201ENST00000327554 LAMC3Q9Y6N6 1575 aa16.86■□□□□ 0.29
CCDC60-201ENST00000327554 ZNF326Q5BKZ1 582 aaKnown RBP16.85■□□□□ 0.29
CCDC60-201ENST00000327554 UHRF1BP1Q6BDS2 1440 aa16.85■□□□□ 0.29
CCDC60-201ENST00000327554 PLIN1O60240 522 aa16.84■□□□□ 0.29
CCDC60-201ENST00000327554 CDCA7LQ96GN5 454 aa16.84■□□□□ 0.29
CCDC60-201ENST00000327554 CRBNQ96SW2 442 aa16.84■□□□□ 0.29
CCDC60-201ENST00000327554 KIAA1107Q9UPP5 1409 aa16.83■□□□□ 0.28
CCDC60-201ENST00000327554 WDR62O43379 1518 aa16.83■□□□□ 0.28
CCDC60-201ENST00000327554 FAM43AQ8N2R8 423 aa16.82■□□□□ 0.28
CCDC60-201ENST00000327554 KDM2BQ8NHM5 1336 aa16.81■□□□□ 0.28
CCDC60-201ENST00000327554 RSPH6AQ9H0K4 717 aa16.81■□□□□ 0.28
CCDC60-201ENST00000327554 PARD3Q8TEW0 1356 aa16.8■□□□□ 0.28
CCDC60-201ENST00000327554 ADGBQ8N7X0 1667 aa16.79■□□□□ 0.28
CCDC60-201ENST00000327554 FRAT2O75474 233 aaPredicted RBP16.79■□□□□ 0.28
CCDC60-201ENST00000327554 NLRP13Q86W25 1043 aa16.79■□□□□ 0.28
CCDC60-201ENST00000327554 DCAF11Q8TEB1 546 aa16.79■□□□□ 0.28
CCDC60-201ENST00000327554 GAPVD1Q14C86 1478 aa16.79■□□□□ 0.28
CCDC60-201ENST00000327554 ZNF644Q9H582 1327 aaPredicted RBP16.78■□□□□ 0.28
CCDC60-201ENST00000327554 DAXXQ9UER7 740 aaPredicted RBP16.78■□□□□ 0.28
CCDC60-201ENST00000327554 TDRD9Q8NDG6 1382 aaKnown RBP16.78■□□□□ 0.28
CCDC60-201ENST00000327554 C8orf34Q49A92 452 aa16.77■□□□□ 0.28
CCDC60-201ENST00000327554 BLMP54132 1417 aaPredicted RBP16.77■□□□□ 0.27
CCDC60-201ENST00000327554 CARD11Q9BXL7 1154 aa16.77■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms