RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 MIA2Q96PC5 1412 aa19.89■□□□□ 0.78
SSBP3-201ENST00000326956 SLC4A1APQ9BWU0 796 aaKnown RBP19.89■□□□□ 0.77
SSBP3-201ENST00000326956 CNGB1Q14028 1251 aaPredicted RBP19.88■□□□□ 0.77
SSBP3-201ENST00000326956 ABCA5Q8WWZ7 1642 aa19.88■□□□□ 0.77
SSBP3-201ENST00000326956 POLR3GLQ9BT43 218 aa19.88■□□□□ 0.77
SSBP3-201ENST00000326956 NBPF8Q3BBV2 869 aa19.87■□□□□ 0.77
SSBP3-201ENST00000326956 KIF7Q2M1P5 1343 aa19.87■□□□□ 0.77
SSBP3-201ENST00000326956 KIF21AQ7Z4S6 1674 aa19.87■□□□□ 0.77
SSBP3-201ENST00000326956 LAMC3Q9Y6N6 1575 aa19.86■□□□□ 0.77
SSBP3-201ENST00000326956 KDM6BO15054 1643 aa19.86■□□□□ 0.77
SSBP3-201ENST00000326956 SLC24A1O60721 1099 aa19.86■□□□□ 0.77
SSBP3-201ENST00000326956 EPRSP07814 1512 aaKnown RBP19.85■□□□□ 0.77
SSBP3-201ENST00000326956 ANKRD30BQ9BXX2 1392 aa19.84■□□□□ 0.77
SSBP3-201ENST00000326956 RPRD2Q5VT52 1461 aaKnown RBP19.83■□□□□ 0.76
SSBP3-201ENST00000326956 CDK13Q14004 1512 aaKnown RBP19.81■□□□□ 0.76
SSBP3-201ENST00000326956 PDS5BQ9NTI5 1447 aa19.8■□□□□ 0.76
SSBP3-201ENST00000326956 ZNF326Q5BKZ1 582 aaKnown RBP19.79■□□□□ 0.76
SSBP3-201ENST00000326956 ROCK1Q13464 1354 aa19.79■□□□□ 0.76
SSBP3-201ENST00000326956 CCDC136Q96JN2 1154 aa19.79■□□□□ 0.76
SSBP3-201ENST00000326956 NOP58Q9Y2X3 529 aaKnown RBP19.77■□□□□ 0.76
SSBP3-201ENST00000326956 DAPK1P53355 1430 aa19.77■□□□□ 0.76
SSBP3-201ENST00000326956 DNAJC5BQ9UF47 199 aa19.76■□□□□ 0.75
SSBP3-201ENST00000326956 NUDCQ9Y266 331 aa19.76■□□□□ 0.75
SSBP3-201ENST00000326956 TEX14Q8IWB6 1497 aa19.76■□□□□ 0.75
SSBP3-201ENST00000326956 IQGAP2Q13576 1575 aa19.75■□□□□ 0.75
SSBP3-201ENST00000326956 SPATA31E1Q6ZUB1 1445 aa19.74■□□□□ 0.75
SSBP3-201ENST00000326956 SMG6Q86US8 1419 aaKnown RBP19.74■□□□□ 0.75
SSBP3-201ENST00000326956 ANP32AP39687 249 aaKnown RBP19.73■□□□□ 0.75
SSBP3-201ENST00000326956 ZNF644Q9H582 1327 aaPredicted RBP19.72■□□□□ 0.75
SSBP3-201ENST00000326956 ABCC5O15440 1437 aa19.72■□□□□ 0.75
SSBP3-201ENST00000326956 PRKCSHP14314 528 aaPredicted RBP19.71■□□□□ 0.75
SSBP3-201ENST00000326956 DEKP35659 375 aaKnown RBP19.71■□□□□ 0.75
SSBP3-201ENST00000326956 TMC1Q8TDI8 760 aa19.71■□□□□ 0.75
SSBP3-201ENST00000326956 NBR1Q14596 966 aa19.7■□□□□ 0.74
SSBP3-201ENST00000326956 WDR62O43379 1518 aa19.69■□□□□ 0.74
SSBP3-201ENST00000326956 USP47Q96K76 1375 aa19.69■□□□□ 0.74
SSBP3-201ENST00000326956 SENP3-EIF4A1A0A087X0R7 540 aa19.66■□□□□ 0.74
SSBP3-201ENST00000326956 POLR1AO95602 1720 aaPredicted RBP19.66■□□□□ 0.74
SSBP3-201ENST00000326956 DNMT1P26358 1616 aaKnown RBP19.66■□□□□ 0.74
SSBP3-201ENST00000326956 CFDP1Q9UEE9 299 aaPredicted RBP19.65■□□□□ 0.74
SSBP3-201ENST00000326956 DHX29Q7Z478 1369 aaKnown RBP19.65■□□□□ 0.74
SSBP3-201ENST00000326956 ZNF777Q9ULD5 760 aaPredicted RBP19.65■□□□□ 0.74
SSBP3-201ENST00000326956 ARID4BQ4LE39 1312 aaPredicted RBP19.64■□□□□ 0.73
SSBP3-201ENST00000326956 PKD2Q13563 968 aa19.63■□□□□ 0.73
SSBP3-201ENST00000326956 ZBTB47Q9UFB7 747 aaPredicted RBP19.63■□□□□ 0.73
SSBP3-201ENST00000326956 PAK3O75914 559 aaPredicted RBP19.62■□□□□ 0.73
SSBP3-201ENST00000326956 RTL5Q5HYW3 569 aaPredicted RBP19.62■□□□□ 0.73
SSBP3-201ENST00000326956 TARBP1Q13395 1621 aaKnown RBP19.62■□□□□ 0.73
SSBP3-201ENST00000326956 RNF123Q5XPI4 1314 aa19.61■□□□□ 0.73
SSBP3-201ENST00000326956 ROCK2O75116 1388 aaKnown RBP19.61■□□□□ 0.73
SSBP3-201ENST00000326956 IPO9Q96P70 1041 aaKnown RBP19.61■□□□□ 0.73
SSBP3-201ENST00000326956 KIAA1107Q9UPP5 1409 aa19.6■□□□□ 0.73
SSBP3-201ENST00000326956 PNISRQ8TF01 805 aaKnown RBP19.6■□□□□ 0.73
SSBP3-201ENST00000326956 PBRM1Q86U86 1689 aa19.6■□□□□ 0.73
SSBP3-201ENST00000326956 CARD11Q9BXL7 1154 aa19.59■□□□□ 0.73
SSBP3-201ENST00000326956 PZPP20742 1482 aa19.59■□□□□ 0.73
SSBP3-201ENST00000326956 ADAMTS12P58397 1594 aa19.57■□□□□ 0.72
SSBP3-201ENST00000326956 KIF15Q9NS87 1388 aa19.56■□□□□ 0.72
SSBP3-201ENST00000326956 ANKRD30AQ9BXX3 1397 aa19.55■□□□□ 0.72
SSBP3-201ENST00000326956 NUP153P49790 1475 aaKnown RBP19.54■□□□□ 0.72
SSBP3-201ENST00000326956 CAMSAP2Q08AD1 1489 aa19.53■□□□□ 0.72
SSBP3-201ENST00000326956 KDM2AQ9Y2K7 1162 aa19.53■□□□□ 0.72
SSBP3-201ENST00000326956 MBD5Q9P267 1494 aa19.53■□□□□ 0.72
SSBP3-201ENST00000326956 BCORL1Q5H9F3 1711 aa19.52■□□□□ 0.72
SSBP3-201ENST00000326956 RALBP1Q15311 655 aa19.52■□□□□ 0.71
SSBP3-201ENST00000326956 MYBBP1AQ9BQG0 1328 aaKnown RBP19.51■□□□□ 0.71
SSBP3-201ENST00000326956 TROQ12816 1431 aaPredicted RBP19.51■□□□□ 0.71
SSBP3-201ENST00000326956 PRG4Q92954 1404 aaPredicted RBP19.51■□□□□ 0.71
SSBP3-201ENST00000326956 KIF14Q15058 1648 aa19.51■□□□□ 0.71
SSBP3-201ENST00000326956 NPM2Q86SE8 214 aaKnown RBP19.5■□□□□ 0.71
SSBP3-201ENST00000326956 KIAA0586Q9BVV6 1533 aa19.5■□□□□ 0.71
SSBP3-201ENST00000326956 SALL2Q9Y467 1007 aaPredicted RBP19.5■□□□□ 0.71
SSBP3-201ENST00000326956 RAPGEF6Q8TEU7 1601 aa19.49■□□□□ 0.71
SSBP3-201ENST00000326956 BRD4O60885 1362 aaPredicted RBP19.49■□□□□ 0.71
SSBP3-201ENST00000326956 KIAA0556O60303 1618 aa19.49■□□□□ 0.71
SSBP3-201ENST00000326956 NUP155O75694 1391 aa19.49■□□□□ 0.71
SSBP3-201ENST00000326956 ST20-MTHFSA0A0A6YYL1 179 aa19.49■□□□□ 0.71
SSBP3-201ENST00000326956 RRP1P56182 461 aaKnown RBP19.49■□□□□ 0.71
SSBP3-201ENST00000326956 KDM5CP41229 1560 aa19.48■□□□□ 0.71
SSBP3-201ENST00000326956 ANKRD50Q9ULJ7 1429 aa19.48■□□□□ 0.71
SSBP3-201ENST00000326956 RCAN3Q9UKA8 241 aa19.47■□□□□ 0.71
SSBP3-201ENST00000326956 KTN1Q86UP2 1357 aaKnown RBP19.47■□□□□ 0.71
SSBP3-201ENST00000326956 DISP1Q96F81 1524 aa19.47■□□□□ 0.71
SSBP3-201ENST00000326956 RALGAPBQ86X10 1494 aa19.46■□□□□ 0.71
SSBP3-201ENST00000326956 DCAF11Q8TEB1 546 aa19.46■□□□□ 0.71
SSBP3-201ENST00000326956 TCERG1O14776 1098 aaKnown RBP19.45■□□□□ 0.7
SSBP3-201ENST00000326956 EXOC6Q8TAG9 804 aa19.45■□□□□ 0.7
SSBP3-201ENST00000326956 ADGBQ8N7X0 1667 aa19.45■□□□□ 0.7
SSBP3-201ENST00000326956 ITSN2Q9NZM3 1697 aa19.44■□□□□ 0.7
SSBP3-201ENST00000326956 GPATCH8Q9UKJ3 1502 aaKnown RBP19.44■□□□□ 0.7
SSBP3-201ENST00000326956 UHRF1BP1Q6BDS2 1440 aa19.44■□□□□ 0.7
SSBP3-201ENST00000326956 TSPY4P0CV99 314 aa19.44■□□□□ 0.7
SSBP3-201ENST00000326956 TSPY10P0CW01 314 aa19.44■□□□□ 0.7
SSBP3-201ENST00000326956 ADGRL2O95490 1459 aa19.44■□□□□ 0.7
SSBP3-201ENST00000326956 MRC2Q9UBG0 1479 aa19.44■□□□□ 0.7
SSBP3-201ENST00000326956 LRPPRCP42704 1394 aaKnown RBP19.43■□□□□ 0.7
SSBP3-201ENST00000326956 PDE3BQ13370 1112 aa19.41■□□□□ 0.7
SSBP3-201ENST00000326956 NLRP13Q86W25 1043 aa19.41■□□□□ 0.7
SSBP3-201ENST00000326956 PLEKHD1A6NEE1 506 aa19.39■□□□□ 0.7
SSBP3-201ENST00000326956 PDE4AP27815 886 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms