RNA–Protein interactions for RNA: ENST00000323959.8

CSTF3-201, Transcript of cleavage stimulation factor subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSTF3, Length 2,797 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-201ENST00000323959 CAMSAP1Q5T5Y3 1602 aa12.39□□□□□ -0.43
CSTF3-201ENST00000323959 SCAF1Q9H7N4 1312 aaKnown RBP12.39□□□□□ -0.43
CSTF3-201ENST00000323959 PLA2R1Q13018 1463 aa12.39□□□□□ -0.43
CSTF3-201ENST00000323959 C3P01024 1663 aa12.37□□□□□ -0.43
CSTF3-201ENST00000323959 PIP4K2BP78356 416 aa12.37□□□□□ -0.43
CSTF3-201ENST00000323959 TRAPPC8Q9Y2L5 1435 aa12.37□□□□□ -0.43
CSTF3-201ENST00000323959 IFFO2Q5TF58 517 aa12.36□□□□□ -0.43
CSTF3-201ENST00000323959 C9orf84Q5VXU9 1444 aa12.36□□□□□ -0.43
CSTF3-201ENST00000323959 PKD2Q13563 968 aa12.35□□□□□ -0.43
CSTF3-201ENST00000323959 UPF1Q92900 1129 aaKnown RBP eCLIP12.35□□□□□ -0.43
CSTF3-201ENST00000323959 POTEAQ6S8J7 498 aa12.34□□□□□ -0.43
CSTF3-201ENST00000323959 ALKQ9UM73 1620 aa12.34□□□□□ -0.43
CSTF3-201ENST00000323959 IGF1RP08069 1367 aa12.33□□□□□ -0.43
CSTF3-201ENST00000323959 ATP10AO60312 1499 aa12.33□□□□□ -0.44
CSTF3-201ENST00000323959 ZNF142P52746 1687 aaPredicted RBP12.32□□□□□ -0.44
CSTF3-201ENST00000323959 TCOF1Q13428 1488 aaKnown RBP12.32□□□□□ -0.44
CSTF3-201ENST00000323959 CEBPAP49715 358 aaPredicted RBP12.31□□□□□ -0.44
CSTF3-201ENST00000323959 MLECQ14165 292 aa12.31□□□□□ -0.44
CSTF3-201ENST00000323959 NPATQ14207 1427 aa12.3□□□□□ -0.44
CSTF3-201ENST00000323959 HECW1Q76N89 1606 aa12.3□□□□□ -0.44
CSTF3-201ENST00000323959 REREQ9P2R6 1566 aa12.29□□□□□ -0.44
CSTF3-201ENST00000323959 RAPGEF2Q9Y4G8 1499 aa12.28□□□□□ -0.44
CSTF3-201ENST00000323959 FOXD1Q16676 465 aa12.27□□□□□ -0.45
CSTF3-201ENST00000323959 RNF17Q9BXT8 1623 aaKnown RBP12.26□□□□□ -0.45
CSTF3-201ENST00000323959 CNTLNQ9NXG0 1405 aa12.26□□□□□ -0.45
CSTF3-201ENST00000323959 AGLP35573 1532 aa12.26□□□□□ -0.45
CSTF3-201ENST00000323959 KIF27Q86VH2 1401 aa12.25□□□□□ -0.45
CSTF3-201ENST00000323959 GOLGA3Q08378 1498 aa12.25□□□□□ -0.45
CSTF3-201ENST00000323959 SHANK2Q9UPX8 1470 aa12.25□□□□□ -0.45
CSTF3-201ENST00000323959 MROH2AA6NES4 1674 aa12.25□□□□□ -0.45
CSTF3-201ENST00000323959 PPP6R1Q9UPN7 881 aa12.24□□□□□ -0.45
CSTF3-201ENST00000323959 NCKAP5LQ9HCH0 1330 aa12.24□□□□□ -0.45
CSTF3-201ENST00000323959 SUPT6HQ7KZ85 1726 aaKnown RBP12.23□□□□□ -0.45
CSTF3-201ENST00000323959 CARMIL1Q5VZK9 1371 aa12.23□□□□□ -0.45
CSTF3-201ENST00000323959 SYNMO15061 1565 aa12.21□□□□□ -0.46
CSTF3-201ENST00000323959 ATP10BO94823 1461 aa12.2□□□□□ -0.46
CSTF3-201ENST00000323959 CDK12Q9NYV4 1490 aaPredicted RBP12.2□□□□□ -0.46
CSTF3-201ENST00000323959 MYO3AQ8NEV4 1616 aa12.19□□□□□ -0.46
CSTF3-201ENST00000323959 POLR1AO95602 1720 aaPredicted RBP12.18□□□□□ -0.46
CSTF3-201ENST00000323959 CEP170BQ9Y4F5 1589 aaPredicted RBP12.17□□□□□ -0.46
CSTF3-201ENST00000323959 VWDEQ8N2E2 1590 aa12.17□□□□□ -0.46
CSTF3-201ENST00000323959 LRRC7Q96NW7 1537 aa12.17□□□□□ -0.46
CSTF3-201ENST00000323959 LRP5O75197 1615 aa12.14□□□□□ -0.47
CSTF3-201ENST00000323959 ESF1Q9H501 851 aaKnown RBP12.12□□□□□ -0.47
CSTF3-201ENST00000323959 NEURL4Q96JN8 1562 aa12.11□□□□□ -0.47
CSTF3-201ENST00000323959 FAM9AQ8IZU1 332 aaPredicted RBP12.11□□□□□ -0.47
CSTF3-201ENST00000323959 CDK13Q14004 1512 aaKnown RBP12.1□□□□□ -0.47
CSTF3-201ENST00000323959 DIP2CQ9Y2E4 1556 aa12.1□□□□□ -0.47
CSTF3-201ENST00000323959 ZRANB1Q9UGI0 708 aa12.1□□□□□ -0.47
CSTF3-201ENST00000323959 CTTNBP2Q8WZ74 1663 aa12.1□□□□□ -0.47
CSTF3-201ENST00000323959 KDM5CP41229 1560 aa12.08□□□□□ -0.47
CSTF3-201ENST00000323959 FAM135BQ49AJ0 1406 aa12.08□□□□□ -0.48
CSTF3-201ENST00000323959 RBM33Q96EV2 1170 aaKnown RBP12.07□□□□□ -0.48
CSTF3-201ENST00000323959 SCAPERQ9BY12 1400 aa12.07□□□□□ -0.48
CSTF3-201ENST00000323959 SETBP1Q9Y6X0 1596 aa12.06□□□□□ -0.48
CSTF3-201ENST00000323959 A2ML1A8K2U0 1454 aa12.06□□□□□ -0.48
CSTF3-201ENST00000323959 ZNF772Q68DY9 489 aaPredicted RBP12.06□□□□□ -0.48
CSTF3-201ENST00000323959 RAPGEF6Q8TEU7 1601 aa12.06□□□□□ -0.48
CSTF3-201ENST00000323959 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.05□□□□□ -0.48
CSTF3-201ENST00000323959 ZNF518AQ6AHZ1 1483 aa12.04□□□□□ -0.48
CSTF3-201ENST00000323959 DEPDC5O75140 1603 aa12.04□□□□□ -0.48
CSTF3-201ENST00000323959 DNMT1P26358 1616 aaKnown RBP12.03□□□□□ -0.48
CSTF3-201ENST00000323959 MED14O60244 1454 aa12.02□□□□□ -0.48
CSTF3-201ENST00000323959 ABCA6Q8N139 1617 aa12.02□□□□□ -0.49
CSTF3-201ENST00000323959 TRIM52Q96A61 297 aa11.99□□□□□ -0.49
CSTF3-201ENST00000323959 LRRC9Q6ZRR7 1453 aa11.99□□□□□ -0.49
CSTF3-201ENST00000323959 MLH3Q9UHC1 1453 aa11.99□□□□□ -0.49
CSTF3-201ENST00000323959 ZMYM3Q14202 1370 aa11.98□□□□□ -0.49
CSTF3-201ENST00000323959 STRCP1A6NGW2 1772 aa11.98□□□□□ -0.49
CSTF3-201ENST00000323959 PLCH2O75038 1416 aa11.98□□□□□ -0.49
CSTF3-201ENST00000323959 JCADQ9P266 1359 aa11.97□□□□□ -0.49
CSTF3-201ENST00000323959 RXRBP28702 533 aa11.97□□□□□ -0.49
CSTF3-201ENST00000323959 SENP3Q9H4L4 574 aaPredicted RBP11.96□□□□□ -0.49
CSTF3-201ENST00000323959 IQGAP1P46940 1657 aa11.96□□□□□ -0.5
CSTF3-201ENST00000323959 NPHP4O75161 1426 aaPredicted RBP11.95□□□□□ -0.5
CSTF3-201ENST00000323959 NHSL1Q5SYE7 1610 aa11.95□□□□□ -0.5
CSTF3-201ENST00000323959 KDM5DQ9BY66 1539 aa11.94□□□□□ -0.5
CSTF3-201ENST00000323959 ATAD2Q6PL18 1390 aa11.93□□□□□ -0.5
CSTF3-201ENST00000323959 ROBO1Q9Y6N7 1651 aa11.93□□□□□ -0.5
CSTF3-201ENST00000323959 CLTCQ00610 1675 aaKnown RBP11.93□□□□□ -0.5
CSTF3-201ENST00000323959 SPATA31A6Q5VVP1 1343 aa11.92□□□□□ -0.5
CSTF3-201ENST00000323959 MYO5CQ9NQX4 1742 aa11.92□□□□□ -0.5
CSTF3-201ENST00000323959 KIF14Q15058 1648 aa11.92□□□□□ -0.5
CSTF3-201ENST00000323959 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.91□□□□□ -0.5
CSTF3-201ENST00000323959 XIRP1Q702N8 1843 aaKnown RBP11.91□□□□□ -0.5
CSTF3-201ENST00000323959 PHLPP1O60346 1717 aa11.91□□□□□ -0.5
CSTF3-201ENST00000323959 FGD6Q6ZV73 1430 aa11.91□□□□□ -0.5
CSTF3-201ENST00000323959 PLEKHD1A6NEE1 506 aa11.9□□□□□ -0.5
CSTF3-201ENST00000323959 NUP153P49790 1475 aaKnown RBP11.9□□□□□ -0.5
CSTF3-201ENST00000323959 ANKLE2Q86XL3 938 aa11.89□□□□□ -0.51
CSTF3-201ENST00000323959 EFCAB2Q5VUJ9 269 aa11.89□□□□□ -0.51
CSTF3-201ENST00000323959 ARID3CA6NKF2 412 aa11.88□□□□□ -0.51
CSTF3-201ENST00000323959 RGS12O14924 1447 aa11.88□□□□□ -0.51
CSTF3-201ENST00000323959 SHPRHQ149N8 1683 aa11.88□□□□□ -0.51
CSTF3-201ENST00000323959 LRP6O75581 1613 aa11.88□□□□□ -0.51
CSTF3-201ENST00000323959 CCDC125Q86Z20 511 aa11.88□□□□□ -0.51
CSTF3-201ENST00000323959 YY1P25490 414 aa11.86□□□□□ -0.51
CSTF3-201ENST00000323959 ABCC1P33527 1531 aa11.85□□□□□ -0.51
CSTF3-201ENST00000323959 NWD1Q149M9 1564 aa11.85□□□□□ -0.51
CSTF3-201ENST00000323959 COL16A1Q07092 1604 aaPredicted RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms