RNA–Protein interactions for RNA: ENST00000322344.7

PNKP-201, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PNKP, Length 2,041 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-201ENST00000322344 ITSN2Q9NZM3 1697 aa31.67■■■□□ 2.66
PNKP-201ENST00000322344 MPHOSPH9Q99550 1183 aa31.66■■■□□ 2.66
PNKP-201ENST00000322344 PLB1Q6P1J6 1458 aa31.65■■■□□ 2.66
PNKP-201ENST00000322344 JPH4Q96JJ6 628 aa31.64■■■□□ 2.66
PNKP-201ENST00000322344 PRG4Q92954 1404 aaPredicted RBP31.64■■■□□ 2.66
PNKP-201ENST00000322344 FBLN2P98095 1184 aa31.62■■■□□ 2.65
PNKP-201ENST00000322344 HIRIP3Q9BW71 556 aaPredicted RBP31.59■■■□□ 2.65
PNKP-201ENST00000322344 CCER2I3L3R5 266 aa31.58■■■□□ 2.65
PNKP-201ENST00000322344 CAMSAP2Q08AD1 1489 aa31.58■■■□□ 2.65
PNKP-201ENST00000322344 ZNF644Q9H582 1327 aaPredicted RBP31.57■■■□□ 2.64
PNKP-201ENST00000322344 GPATCH8Q9UKJ3 1502 aaKnown RBP31.56■■■□□ 2.64
PNKP-201ENST00000322344 ANP32CO43423 234 aa31.55■■■□□ 2.64
PNKP-201ENST00000322344 CFDP1Q9UEE9 299 aaPredicted RBP31.54■■■□□ 2.64
PNKP-201ENST00000322344 ABCA8O94911 1581 aa31.54■■■□□ 2.64
PNKP-201ENST00000322344 KCNH8Q96L42 1107 aa31.52■■■□□ 2.64
PNKP-201ENST00000322344 KIF14Q15058 1648 aa31.51■■■□□ 2.64
PNKP-201ENST00000322344 ADGBQ8N7X0 1667 aa31.51■■■□□ 2.64
PNKP-201ENST00000322344 ANKRD30BQ9BXX2 1392 aa31.5■■■□□ 2.63
PNKP-201ENST00000322344 ADGRL2O95490 1459 aa31.5■■■□□ 2.63
PNKP-201ENST00000322344 RPRD2Q5VT52 1461 aaKnown RBP31.48■■■□□ 2.63
PNKP-201ENST00000322344 NCOA1Q15788 1441 aa31.46■■■□□ 2.63
PNKP-201ENST00000322344 CROCC2H7BZ55 1655 aa31.45■■■□□ 2.63
PNKP-201ENST00000322344 PLEKHD1A6NEE1 506 aa31.42■■■□□ 2.62
PNKP-201ENST00000322344 L3MBTL2Q969R5 705 aa31.41■■■□□ 2.62
PNKP-201ENST00000322344 ATP10BO94823 1461 aa31.4■■■□□ 2.62
PNKP-201ENST00000322344 SLC4A1APQ9BWU0 796 aaKnown RBP31.4■■■□□ 2.62
PNKP-201ENST00000322344 EIF4G2P78344 907 aaKnown RBP eCLIP31.39■■■□□ 2.62
PNKP-201ENST00000322344 ABCC10Q5T3U5 1492 aa31.39■■■□□ 2.62
PNKP-201ENST00000322344 HSPA5P11021 654 aaKnown RBP31.39■■■□□ 2.62
PNKP-201ENST00000322344 ANKRD30AQ9BXX3 1397 aa31.38■■■□□ 2.61
PNKP-201ENST00000322344 FOXD1Q16676 465 aa31.37■■■□□ 2.61
PNKP-201ENST00000322344 PZPP20742 1482 aa31.37■■■□□ 2.61
PNKP-201ENST00000322344 TEX14Q8IWB6 1497 aa31.37■■■□□ 2.61
PNKP-201ENST00000322344 SUPT16HQ9Y5B9 1047 aaKnown RBP31.36■■■□□ 2.61
PNKP-201ENST00000322344 SHANK2Q9UPX8 1470 aa31.35■■■□□ 2.61
PNKP-201ENST00000322344 CDC42BPAQ5VT25 1732 aa31.34■■■□□ 2.61
PNKP-201ENST00000322344 ZNF777Q9ULD5 760 aaPredicted RBP31.34■■■□□ 2.61
PNKP-201ENST00000322344 PTPRGP23470 1445 aa31.28■■■□□ 2.6
PNKP-201ENST00000322344 WASHC2AQ641Q2 1341 aa31.28■■■□□ 2.6
PNKP-201ENST00000322344 KIAA1107Q9UPP5 1409 aa31.27■■■□□ 2.6
PNKP-201ENST00000322344 ANKRD50Q9ULJ7 1429 aa31.25■■■□□ 2.59
PNKP-201ENST00000322344 C9orf84Q5VXU9 1444 aa31.22■■■□□ 2.59
PNKP-201ENST00000322344 ARHGEF5Q12774 1597 aa31.21■■■□□ 2.59
PNKP-201ENST00000322344 CNTLNQ9NXG0 1405 aa31.19■■■□□ 2.58
PNKP-201ENST00000322344 NBPF8Q3BBV2 869 aa31.19■■■□□ 2.58
PNKP-201ENST00000322344 CHD1O14646 1710 aa31.16■■■□□ 2.58
PNKP-201ENST00000322344 TSPY4P0CV99 314 aa31.15■■■□□ 2.58
PNKP-201ENST00000322344 TSPY10P0CW01 314 aa31.15■■■□□ 2.58
PNKP-201ENST00000322344 CCDC7Q96M83 1385 aa31.15■■■□□ 2.58
PNKP-201ENST00000322344 KDM5DQ9BY66 1539 aa31.15■■■□□ 2.58
PNKP-201ENST00000322344 MBD5Q9P267 1494 aa31.15■■■□□ 2.58
PNKP-201ENST00000322344 SHROOM2Q13796 1616 aa31.14■■■□□ 2.58
PNKP-201ENST00000322344 SPATA31E1Q6ZUB1 1445 aa31.14■■■□□ 2.57
PNKP-201ENST00000322344 PKD2Q13563 968 aa31.12■■■□□ 2.57
PNKP-201ENST00000322344 PREX2Q70Z35 1606 aa31.1■■■□□ 2.57
PNKP-201ENST00000322344 RSPH4AQ5TD94 716 aa31.08■■■□□ 2.57
PNKP-201ENST00000322344 POLR1AO95602 1720 aaPredicted RBP31.08■■■□□ 2.57
PNKP-201ENST00000322344 CCDC141Q6ZP82 1450 aa31.07■■■□□ 2.56
PNKP-201ENST00000322344 NUP155O75694 1391 aa31.07■■■□□ 2.56
PNKP-201ENST00000322344 KIF15Q9NS87 1388 aa31.05■■■□□ 2.56
PNKP-201ENST00000322344 SAMD9LQ8IVG5 1584 aa31.05■■■□□ 2.56
PNKP-201ENST00000322344 C11orf95C9JLR9 678 aaPredicted RBP31.03■■■□□ 2.56
PNKP-201ENST00000322344 CDC42BPBQ9Y5S2 1711 aa31.03■■■□□ 2.56
PNKP-201ENST00000322344 HNRNPMP52272 730 aaKnown RBP eCLIP31.01■■■□□ 2.55
PNKP-201ENST00000322344 UHRF1BP1Q6BDS2 1440 aa30.99■■■□□ 2.55
PNKP-201ENST00000322344 ARHGEF12Q9NZN5 1544 aa30.99■■■□□ 2.55
PNKP-201ENST00000322344 ABCC2Q92887 1545 aa30.97■■■□□ 2.55
PNKP-201ENST00000322344 KIF7Q2M1P5 1343 aa30.97■■■□□ 2.55
PNKP-201ENST00000322344 MAST1Q9Y2H9 1570 aa30.95■■■□□ 2.55
PNKP-201ENST00000322344 NEFLP07196 543 aa30.95■■■□□ 2.55
PNKP-201ENST00000322344 PRKRIP1Q9H875 184 aaPredicted RBP30.93■■■□□ 2.54
PNKP-201ENST00000322344 FKBP8Q14318 412 aa30.92■■■□□ 2.54
PNKP-201ENST00000322344 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.91■■■□□ 2.54
PNKP-201ENST00000322344 RALGAPBQ86X10 1494 aa30.91■■■□□ 2.54
PNKP-201ENST00000322344 PLEKHH2Q8IVE3 1493 aa30.91■■■□□ 2.54
PNKP-201ENST00000322344 TTC37Q6PGP7 1564 aa30.9■■■□□ 2.54
PNKP-201ENST00000322344 USP47Q96K76 1375 aa30.9■■■□□ 2.54
PNKP-201ENST00000322344 ARHGAP5Q13017 1502 aa30.9■■■□□ 2.54
PNKP-201ENST00000322344 ARID4BQ4LE39 1312 aaPredicted RBP30.9■■■□□ 2.54
PNKP-201ENST00000322344 HNRNPUQ00839 825 aaKnown RBP eCLIP30.88■■■□□ 2.53
PNKP-201ENST00000322344 SYCP2Q9BX26 1530 aa30.87■■■□□ 2.53
PNKP-201ENST00000322344 KDM5CP41229 1560 aa30.87■■■□□ 2.53
PNKP-201ENST00000322344 FAM135AQ9P2D6 1515 aa30.85■■■□□ 2.53
PNKP-201ENST00000322344 MYO5CQ9NQX4 1742 aa30.85■■■□□ 2.53
PNKP-201ENST00000322344 ERCC6L2Q5T890 1561 aa30.84■■■□□ 2.53
PNKP-201ENST00000322344 UNC13BO14795 1591 aa30.82■■■□□ 2.52
PNKP-201ENST00000322344 PLXNC1O60486 1568 aa30.82■■■□□ 2.52
PNKP-201ENST00000322344 ZNF326Q5BKZ1 582 aaKnown RBP30.81■■■□□ 2.52
PNKP-201ENST00000322344 UHRF1BP1LA0JNW5 1464 aa30.8■■■□□ 2.52
PNKP-201ENST00000322344 CLASP1Q7Z460 1538 aa30.8■■■□□ 2.52
PNKP-201ENST00000322344 BCORL1Q5H9F3 1711 aa30.78■■■□□ 2.52
PNKP-201ENST00000322344 ROCK2O75116 1388 aaKnown RBP30.76■■■□□ 2.51
PNKP-201ENST00000322344 MRS2Q9HD23 443 aa30.74■■■□□ 2.51
PNKP-201ENST00000322344 CCDC184Q52MB2 194 aa30.73■■■□□ 2.51
PNKP-201ENST00000322344 PLCH2O75038 1416 aa30.72■■■□□ 2.51
PNKP-201ENST00000322344 BCANQ96GW7 911 aa30.72■■■□□ 2.51
PNKP-201ENST00000322344 CARD11Q9BXL7 1154 aa30.72■■■□□ 2.51
PNKP-201ENST00000322344 ZCCHC11Q5TAX3 1644 aaKnown RBP30.72■■■□□ 2.51
PNKP-201ENST00000322344 DHX29Q7Z478 1369 aaKnown RBP30.72■■■□□ 2.51
PNKP-201ENST00000322344 DUOX2Q9NRD8 1548 aa30.71■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms