RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 OS9Q13438 667 aaPredicted RBP17.61■□□□□ 0.41
RFFL-201ENST00000315249 PNNQ9H307 717 aaKnown RBP17.61■□□□□ 0.41
RFFL-201ENST00000315249 KANK4Q5T7N3 995 aaPredicted RBP17.61■□□□□ 0.41
RFFL-201ENST00000315249 ZNF330Q9Y3S2 320 aaPredicted RBP17.6■□□□□ 0.41
RFFL-201ENST00000315249 FRAT1Q92837 279 aaPredicted RBP17.6■□□□□ 0.41
RFFL-201ENST00000315249 FHOD3Q2V2M9 1422 aa17.58■□□□□ 0.41
RFFL-201ENST00000315249 RTF1Q92541 710 aaKnown RBP17.58■□□□□ 0.41
RFFL-201ENST00000315249 FAM69CQ0P6D2 419 aa17.57■□□□□ 0.4
RFFL-201ENST00000315249 ANKRD30AQ9BXX3 1397 aa17.56■□□□□ 0.4
RFFL-201ENST00000315249 RAPGEF2Q9Y4G8 1499 aa17.55■□□□□ 0.4
RFFL-201ENST00000315249 NGDNQ8NEJ9 315 aaKnown RBP17.55■□□□□ 0.4
RFFL-201ENST00000315249 PTPRGP23470 1445 aa17.53■□□□□ 0.4
RFFL-201ENST00000315249 PRDM2Q13029 1718 aa17.53■□□□□ 0.4
RFFL-201ENST00000315249 ROCK2O75116 1388 aaKnown RBP17.51■□□□□ 0.39
RFFL-201ENST00000315249 CDK11BP21127 795 aaKnown RBP17.51■□□□□ 0.39
RFFL-201ENST00000315249 MPHOSPH9Q99550 1183 aa17.5■□□□□ 0.39
RFFL-201ENST00000315249 SETD5Q9C0A6 1442 aa17.5■□□□□ 0.39
RFFL-201ENST00000315249 CASC1Q6TDU7 716 aa17.5■□□□□ 0.39
RFFL-201ENST00000315249 CCDC18Q5T9S5 1454 aa17.5■□□□□ 0.39
RFFL-201ENST00000315249 TPRNQ4KMQ1 711 aa17.49■□□□□ 0.39
RFFL-201ENST00000315249 VPS8Q8N3P4 1428 aa17.49■□□□□ 0.39
RFFL-201ENST00000315249 LTV1Q96GA3 475 aaPredicted RBP17.47■□□□□ 0.39
RFFL-201ENST00000315249 RSPH4AQ5TD94 716 aa17.44■□□□□ 0.38
RFFL-201ENST00000315249 NAP1L2Q9ULW6 460 aaPredicted RBP17.44■□□□□ 0.38
RFFL-201ENST00000315249 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.43■□□□□ 0.383e-6■■□□□ 13.9
RFFL-201ENST00000315249 ISY1Q9ULR0 285 aaKnown RBP17.42■□□□□ 0.38
RFFL-201ENST00000315249 TRAK1Q9UPV9 953 aa17.42■□□□□ 0.38
RFFL-201ENST00000315249 GAPVD1Q14C86 1478 aa17.42■□□□□ 0.38
RFFL-201ENST00000315249 KCNJ4P48050 445 aa17.42■□□□□ 0.38
RFFL-201ENST00000315249 FGD1P98174 961 aa17.42■□□□□ 0.38
RFFL-201ENST00000315249 U2AF1L5P0DN76 240 aaPredicted RBP17.41■□□□□ 0.38
RFFL-201ENST00000315249 U2AF1Q01081 240 aaKnown RBP eCLIP17.41■□□□□ 0.38
RFFL-201ENST00000315249 TMX4Q9H1E5 349 aaPredicted RBP17.41■□□□□ 0.38
RFFL-201ENST00000315249 SUPT16HQ9Y5B9 1047 aaKnown RBP17.41■□□□□ 0.38
RFFL-201ENST00000315249 AMPHP49418 695 aa17.4■□□□□ 0.38
RFFL-201ENST00000315249 MEX3CQ5U5Q3 659 aaKnown RBP17.4■□□□□ 0.38
RFFL-201ENST00000315249 EVA1CP58658 441 aa17.4■□□□□ 0.38
RFFL-201ENST00000315249 NBR1Q14596 966 aa17.4■□□□□ 0.38
RFFL-201ENST00000315249 HSPA5P11021 654 aaKnown RBP17.4■□□□□ 0.38
RFFL-201ENST00000315249 RAD54L2Q9Y4B4 1467 aa17.4■□□□□ 0.38
RFFL-201ENST00000315249 NCLP19338 710 aaKnown RBP17.38■□□□□ 0.37
RFFL-201ENST00000315249 TERF2IPQ9NYB0 399 aa17.38■□□□□ 0.37
RFFL-201ENST00000315249 AQRO60306 1485 aaKnown RBP eCLIP17.36■□□□□ 0.375e-10■■■■■ 39.2
RFFL-201ENST00000315249 FGD5Q6ZNL6 1462 aa17.36■□□□□ 0.37
RFFL-201ENST00000315249 EIF3AQ14152 1382 aaKnown RBP17.36■□□□□ 0.37
RFFL-201ENST00000315249 RGS3P49796 1198 aa17.36■□□□□ 0.37
RFFL-201ENST00000315249 CHMP4BQ9H444 224 aaKnown RBP17.36■□□□□ 0.37
RFFL-201ENST00000315249 RAB3GAP2Q9H2M9 1393 aa17.35■□□□□ 0.37
RFFL-201ENST00000315249 BECN1Q14457 450 aa17.35■□□□□ 0.37
RFFL-201ENST00000315249 MS4A1P11836 297 aa17.34■□□□□ 0.37
RFFL-201ENST00000315249 APBB1O00213 710 aa17.33■□□□□ 0.36
RFFL-201ENST00000315249 CHMP3Q9Y3E7 222 aa17.33■□□□□ 0.36
RFFL-201ENST00000315249 ZRSR1Q15695 479 aaKnown RBP17.32■□□□□ 0.36
RFFL-201ENST00000315249 KTN1Q86UP2 1357 aaKnown RBP17.32■□□□□ 0.36
RFFL-201ENST00000315249 PHF23Q9BUL5 403 aaPredicted RBP17.32■□□□□ 0.36
RFFL-201ENST00000315249 MSH5O43196 834 aa17.31■□□□□ 0.36
RFFL-201ENST00000315249 G3V3G9 751 aa17.31■□□□□ 0.36
RFFL-201ENST00000315249 DCAF8Q5TAQ9 597 aa17.31■□□□□ 0.36
RFFL-201ENST00000315249 CC2D2AQ9P2K1 1620 aa17.29■□□□□ 0.36
RFFL-201ENST00000315249 RUSC2Q8N2Y8 1516 aa17.28■□□□□ 0.36
RFFL-201ENST00000315249 GTF2E1P29083 439 aaPredicted RBP17.28■□□□□ 0.36
RFFL-201ENST00000315249 TAF7LQ5H9L4 462 aa17.28■□□□□ 0.36
RFFL-201ENST00000315249 VGFO15240 615 aaPredicted RBP17.26■□□□□ 0.35
RFFL-201ENST00000315249 PSME1Q06323 249 aa17.26■□□□□ 0.35
RFFL-201ENST00000315249 MINK1Q8N4C8 1332 aaPredicted RBP17.25■□□□□ 0.35
RFFL-201ENST00000315249 CALD1Q05682 793 aaKnown RBP17.25■□□□□ 0.35
RFFL-201ENST00000315249 L3MBTL2Q969R5 705 aa17.24■□□□□ 0.35
RFFL-201ENST00000315249 CCDC144AA2RUR9 1427 aa17.24■□□□□ 0.35
RFFL-201ENST00000315249 NESP48681 1621 aa17.24■□□□□ 0.35
RFFL-201ENST00000315249 GOLGA6L22H0YM25 854 aa17.23■□□□□ 0.35
RFFL-201ENST00000315249 ATF3P18847 181 aa17.23■□□□□ 0.35
RFFL-201ENST00000315249 SYTL4Q96C24 671 aaPredicted RBP17.22■□□□□ 0.35
RFFL-201ENST00000315249 STK31Q9BXU1 1019 aa17.22■□□□□ 0.35
RFFL-201ENST00000315249 TIMELESSQ9UNS1 1208 aa17.22■□□□□ 0.35
RFFL-201ENST00000315249 EIF5BO60841 1220 aaKnown RBP17.22■□□□□ 0.35
RFFL-201ENST00000315249 GORABQ5T7V8 394 aa17.22■□□□□ 0.35
RFFL-201ENST00000315249 DDRGK1Q96HY6 314 aa17.21■□□□□ 0.35
RFFL-201ENST00000315249 CCDC146Q8IYE0 955 aa17.2■□□□□ 0.34
RFFL-201ENST00000315249 SLC4A10Q6U841 1118 aa17.19■□□□□ 0.34
RFFL-201ENST00000315249 IPO8O15397 1037 aaKnown RBP17.19■□□□□ 0.34
RFFL-201ENST00000315249 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.19■□□□□ 0.34
RFFL-201ENST00000315249 CLSTN1O94985 981 aa17.18■□□□□ 0.34
RFFL-201ENST00000315249 COG3Q96JB2 828 aa17.18■□□□□ 0.34
RFFL-201ENST00000315249 UACAQ9BZF9 1416 aa17.18■□□□□ 0.34
RFFL-201ENST00000315249 C1orf141Q5JVX7 400 aa17.17■□□□□ 0.34
RFFL-201ENST00000315249 ITPRIPQ8IWB1 547 aa17.16■□□□□ 0.34
RFFL-201ENST00000315249 FRAT2O75474 233 aaPredicted RBP17.16■□□□□ 0.34
RFFL-201ENST00000315249 B4GALNT3Q6L9W6 998 aa17.16■□□□□ 0.34
RFFL-201ENST00000315249 HSP90AB1P08238 724 aaKnown RBP17.16■□□□□ 0.34
RFFL-201ENST00000315249 KLHL34Q8N239 644 aa17.15■□□□□ 0.34
RFFL-201ENST00000315249 EVC2Q86UK5 1308 aa17.14■□□□□ 0.34
RFFL-201ENST00000315249 NCBP3Q53F19 620 aaKnown RBP17.14■□□□□ 0.33
RFFL-201ENST00000315249 NGEFQ8N5V2 710 aa17.14■□□□□ 0.33
RFFL-201ENST00000315249 IGF1RP08069 1367 aa17.14■□□□□ 0.33
RFFL-201ENST00000315249 NCAPD3P42695 1498 aa17.13■□□□□ 0.33
RFFL-201ENST00000315249 CHMP4AQ9BY43 222 aa17.13■□□□□ 0.33
RFFL-201ENST00000315249 ARHGAP5Q13017 1502 aa17.13■□□□□ 0.33
RFFL-201ENST00000315249 RALBP1Q15311 655 aa17.13■□□□□ 0.33
RFFL-201ENST00000315249 GRIN2BQ13224 1484 aa17.13■□□□□ 0.33
RFFL-201ENST00000315249 ZNF644Q9H582 1327 aaPredicted RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms