RNA–Protein interactions for RNA: ENST00000309660.9

PTPN2-201, Transcript of protein tyrosine phosphatase, non-receptor type 2, humanhuman

TSL 1 (best) BASIC

Gene PTPN2, Length 3,467 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN2-201ENST00000309660 DAPK1P53355 1430 aa16.21■□□□□ 0.19
PTPN2-201ENST00000309660 BCANQ96GW7 911 aa16.21■□□□□ 0.19
PTPN2-201ENST00000309660 SUPT16HQ9Y5B9 1047 aaKnown RBP16.21■□□□□ 0.19
PTPN2-201ENST00000309660 SYNJ2O15056 1496 aa16.21■□□□□ 0.19
PTPN2-201ENST00000309660 CARMIL2Q6F5E8 1435 aa16.21■□□□□ 0.19
PTPN2-201ENST00000309660 PLEKHD1A6NEE1 506 aa16.21■□□□□ 0.18
PTPN2-201ENST00000309660 CNGB1Q14028 1251 aaPredicted RBP16.2■□□□□ 0.18
PTPN2-201ENST00000309660 ABCC5O15440 1437 aa16.2■□□□□ 0.18
PTPN2-201ENST00000309660 MAGI1Q96QZ7 1491 aaPredicted RBP16.2■□□□□ 0.18
PTPN2-201ENST00000309660 RAPGEF6Q8TEU7 1601 aa16.2■□□□□ 0.18
PTPN2-201ENST00000309660 EIF4G2P78344 907 aaKnown RBP eCLIP16.18■□□□□ 0.18
PTPN2-201ENST00000309660 CEP170Q5SW79 1584 aa16.18■□□□□ 0.18
PTPN2-201ENST00000309660 TROQ12816 1431 aaPredicted RBP16.17■□□□□ 0.18
PTPN2-201ENST00000309660 POLR3GLQ9BT43 218 aa16.17■□□□□ 0.18
PTPN2-201ENST00000309660 DENND4BO75064 1496 aaPredicted RBP16.16■□□□□ 0.18
PTPN2-201ENST00000309660 AKNAQ7Z591 1439 aa16.13■□□□□ 0.17
PTPN2-201ENST00000309660 WASHC2AQ641Q2 1341 aa16.12■□□□□ 0.17
PTPN2-201ENST00000309660 GCC2Q8IWJ2 1684 aa16.12■□□□□ 0.17
PTPN2-201ENST00000309660 NBPF8Q3BBV2 869 aa16.11■□□□□ 0.17
PTPN2-201ENST00000309660 CAMSAP2Q08AD1 1489 aa16.11■□□□□ 0.17
PTPN2-201ENST00000309660 CCER2I3L3R5 266 aa16.11■□□□□ 0.17
PTPN2-201ENST00000309660 FKBP8Q14318 412 aa16.11■□□□□ 0.17
PTPN2-201ENST00000309660 ROCK1Q13464 1354 aa16.1■□□□□ 0.17
PTPN2-201ENST00000309660 PKD2Q13563 968 aa16.1■□□□□ 0.17
PTPN2-201ENST00000309660 HNRNPMP52272 730 aaKnown RBP eCLIP16.1■□□□□ 0.17
PTPN2-201ENST00000309660 GPATCH8Q9UKJ3 1502 aaKnown RBP16.1■□□□□ 0.17
PTPN2-201ENST00000309660 TSPY4P0CV99 314 aa16.09■□□□□ 0.17
PTPN2-201ENST00000309660 TSPY10P0CW01 314 aa16.09■□□□□ 0.17
PTPN2-201ENST00000309660 KIF14Q15058 1648 aa16.09■□□□□ 0.17
PTPN2-201ENST00000309660 ANKRD30BQ9BXX2 1392 aa16.08■□□□□ 0.17
PTPN2-201ENST00000309660 HNRNPUQ00839 825 aaKnown RBP eCLIP16.08■□□□□ 0.16
PTPN2-201ENST00000309660 KDM5BQ9UGL1 1544 aa16.08■□□□□ 0.16
PTPN2-201ENST00000309660 NUP160Q12769 1436 aa16.08■□□□□ 0.16
PTPN2-201ENST00000309660 DNMT1P26358 1616 aaKnown RBP16.07■□□□□ 0.16
PTPN2-201ENST00000309660 C11orf95C9JLR9 678 aaPredicted RBP16.07■□□□□ 0.16
PTPN2-201ENST00000309660 NEFLP07196 543 aa16.06■□□□□ 0.16
PTPN2-201ENST00000309660 NCOA1Q15788 1441 aa16.06■□□□□ 0.16
PTPN2-201ENST00000309660 ANKRD30AQ9BXX3 1397 aa16.06■□□□□ 0.16
PTPN2-201ENST00000309660 PTPRGP23470 1445 aa16.05■□□□□ 0.16
PTPN2-201ENST00000309660 KDM2AQ9Y2K7 1162 aa16.04■□□□□ 0.16
PTPN2-201ENST00000309660 NUP155O75694 1391 aa16.03■□□□□ 0.16
PTPN2-201ENST00000309660 ATP10BO94823 1461 aa16.03■□□□□ 0.16
PTPN2-201ENST00000309660 ANKRD50Q9ULJ7 1429 aa16.02■□□□□ 0.15
PTPN2-201ENST00000309660 RPRD2Q5VT52 1461 aaKnown RBP16.02■□□□□ 0.15
PTPN2-201ENST00000309660 FAM9BQ8IZU0 186 aa16.01■□□□□ 0.15
PTPN2-201ENST00000309660 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16■□□□□ 0.15
PTPN2-201ENST00000309660 CCDC184Q52MB2 194 aa15.99■□□□□ 0.15
PTPN2-201ENST00000309660 PZPP20742 1482 aa15.98■□□□□ 0.15
PTPN2-201ENST00000309660 C9orf84Q5VXU9 1444 aa15.97■□□□□ 0.15
PTPN2-201ENST00000309660 CCDC7Q96M83 1385 aa15.97■□□□□ 0.15
PTPN2-201ENST00000309660 ITSN2Q9NZM3 1697 aa15.97■□□□□ 0.15
PTPN2-201ENST00000309660 MRS2Q9HD23 443 aa15.97■□□□□ 0.15
PTPN2-201ENST00000309660 IRX6P78412 446 aaPredicted RBP15.96■□□□□ 0.14
PTPN2-201ENST00000309660 KIF7Q2M1P5 1343 aa15.95■□□□□ 0.14
PTPN2-201ENST00000309660 KIAA1107Q9UPP5 1409 aa15.95■□□□□ 0.14
PTPN2-201ENST00000309660 TEX14Q8IWB6 1497 aa15.95■□□□□ 0.14
PTPN2-201ENST00000309660 KIF15Q9NS87 1388 aa15.95■□□□□ 0.14
PTPN2-201ENST00000309660 SENP3-EIF4A1A0A087X0R7 540 aa15.94■□□□□ 0.14
PTPN2-201ENST00000309660 CNTLNQ9NXG0 1405 aa15.93■□□□□ 0.14
PTPN2-201ENST00000309660 ABCA8O94911 1581 aa15.93■□□□□ 0.14
PTPN2-201ENST00000309660 RGL3Q3MIN7 710 aa15.93■□□□□ 0.14
PTPN2-201ENST00000309660 DCAF11Q8TEB1 546 aa15.93■□□□□ 0.14
PTPN2-201ENST00000309660 PRKRIP1Q9H875 184 aaPredicted RBP15.93■□□□□ 0.14
PTPN2-201ENST00000309660 CARD11Q9BXL7 1154 aa15.92■□□□□ 0.14
PTPN2-201ENST00000309660 ABCC10Q5T3U5 1492 aa15.9■□□□□ 0.14
PTPN2-201ENST00000309660 USP47Q96K76 1375 aa15.9■□□□□ 0.14
PTPN2-201ENST00000309660 ADGRL2O95490 1459 aa15.89■□□□□ 0.13
PTPN2-201ENST00000309660 CDC42BPAQ5VT25 1732 aa15.88■□□□□ 0.13
PTPN2-201ENST00000309660 ADCY10Q96PN6 1610 aa15.87■□□□□ 0.13
PTPN2-201ENST00000309660 ADGBQ8N7X0 1667 aa15.86■□□□□ 0.13
PTPN2-201ENST00000309660 TSHZ2Q9NRE2 1034 aa15.85■□□□□ 0.13
PTPN2-201ENST00000309660 MYT1LQ9UL68 1186 aa15.84■□□□□ 0.13
PTPN2-201ENST00000309660 ARHGAP5Q13017 1502 aa15.84■□□□□ 0.13
PTPN2-201ENST00000309660 ST20-MTHFSA0A0A6YYL1 179 aa15.83■□□□□ 0.12
PTPN2-201ENST00000309660 SPATA31E1Q6ZUB1 1445 aa15.82■□□□□ 0.12
PTPN2-201ENST00000309660 ERCC6L2Q5T890 1561 aa15.82■□□□□ 0.12
PTPN2-201ENST00000309660 CHD1O14646 1710 aa15.82■□□□□ 0.12
PTPN2-201ENST00000309660 CROCC2H7BZ55 1655 aa15.82■□□□□ 0.12
PTPN2-201ENST00000309660 CCDC141Q6ZP82 1450 aa15.82■□□□□ 0.12
PTPN2-201ENST00000309660 MBD5Q9P267 1494 aa15.81■□□□□ 0.12
PTPN2-201ENST00000309660 RSPH4AQ5TD94 716 aa15.8■□□□□ 0.12
PTPN2-201ENST00000309660 SHANK2Q9UPX8 1470 aa15.79■□□□□ 0.12
PTPN2-201ENST00000309660 SYCP2Q9BX26 1530 aa15.79■□□□□ 0.12
PTPN2-201ENST00000309660 ROCK2O75116 1388 aaKnown RBP15.78■□□□□ 0.12
PTPN2-201ENST00000309660 SAMD9LQ8IVG5 1584 aa15.78■□□□□ 0.12
PTPN2-201ENST00000309660 CCDC144AA2RUR9 1427 aa15.77■□□□□ 0.11
PTPN2-201ENST00000309660 EFCAB2Q5VUJ9 269 aa15.76■□□□□ 0.11
PTPN2-201ENST00000309660 NBPF1Q3BBV0 1214 aa15.75■□□□□ 0.11
PTPN2-201ENST00000309660 TTC37Q6PGP7 1564 aa15.75■□□□□ 0.11
PTPN2-201ENST00000309660 TMC1Q8TDI8 760 aa15.75■□□□□ 0.11
PTPN2-201ENST00000309660 PLEKHH2Q8IVE3 1493 aa15.73■□□□□ 0.11
PTPN2-201ENST00000309660 AFAP1Q8N556 730 aa15.73■□□□□ 0.11
PTPN2-201ENST00000309660 CDC42BPBQ9Y5S2 1711 aa15.73■□□□□ 0.11
PTPN2-201ENST00000309660 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.73■□□□□ 0.11
PTPN2-201ENST00000309660 FAM135AQ9P2D6 1515 aa15.72■□□□□ 0.11
PTPN2-201ENST00000309660 SALL2Q9Y467 1007 aaPredicted RBP15.71■□□□□ 0.11
PTPN2-201ENST00000309660 PREX2Q70Z35 1606 aa15.71■□□□□ 0.11
PTPN2-201ENST00000309660 ARHGEF5Q12774 1597 aa15.71■□□□□ 0.11
PTPN2-201ENST00000309660 ABCC2Q92887 1545 aa15.7■□□□□ 0.1
PTPN2-201ENST00000309660 BCORL1Q5H9F3 1711 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms