RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 ESF1Q9H501 851 aaKnown RBP14.08□□□□□ -0.16
HDGFL3-201ENST00000299633 SENP3Q9H4L4 574 aaPredicted RBP14.07□□□□□ -0.16
HDGFL3-201ENST00000299633 HMMRO75330 724 aa14.07□□□□□ -0.16
HDGFL3-201ENST00000299633 CCDC70Q6NSX1 233 aa14.07□□□□□ -0.16
HDGFL3-201ENST00000299633 EIF4G2P78344 907 aaKnown RBP eCLIP14.06□□□□□ -0.16
HDGFL3-201ENST00000299633 CCDC191Q8NCU4 936 aa14.06□□□□□ -0.16
HDGFL3-201ENST00000299633 CALD1Q05682 793 aaKnown RBP14.06□□□□□ -0.16
HDGFL3-201ENST00000299633 TPM3P06753 285 aa14.06□□□□□ -0.16
HDGFL3-201ENST00000299633 FBXO3Q9UK99 471 aa14.05□□□□□ -0.16
HDGFL3-201ENST00000299633 CHMP4BQ9H444 224 aaKnown RBP14.04□□□□□ -0.16
HDGFL3-201ENST00000299633 CWC15Q9P013 229 aaKnown RBP14.03□□□□□ -0.16
HDGFL3-201ENST00000299633 RB1CC1Q8TDY2 1594 aa14.03□□□□□ -0.16
HDGFL3-201ENST00000299633 CCDC34Q96HJ3 373 aa14.01□□□□□ -0.17
HDGFL3-201ENST00000299633 GOLGA2Q08379 1002 aa14.01□□□□□ -0.17
HDGFL3-201ENST00000299633 OS9Q13438 667 aaPredicted RBP14.01□□□□□ -0.17
HDGFL3-201ENST00000299633 CFAP44Q96MT7 982 aa14.01□□□□□ -0.17
HDGFL3-201ENST00000299633 CEP89Q96ST8 783 aa14.01□□□□□ -0.17
HDGFL3-201ENST00000299633 CCAR2Q8N163 923 aaKnown RBP14□□□□□ -0.17
HDGFL3-201ENST00000299633 AK7Q96M32 723 aa13.99□□□□□ -0.17
HDGFL3-201ENST00000299633 CSPP1Q1MSJ5 1256 aa13.99□□□□□ -0.17
HDGFL3-201ENST00000299633 SLKQ9H2G2 1235 aaPredicted RBP13.98□□□□□ -0.17
HDGFL3-201ENST00000299633 RSF1Q96T23 1441 aaPredicted RBP13.95□□□□□ -0.18
HDGFL3-201ENST00000299633 DYDC1Q8WWB3 177 aa13.95□□□□□ -0.18
HDGFL3-201ENST00000299633 EEA1Q15075 1411 aa13.95□□□□□ -0.18
HDGFL3-201ENST00000299633 CEP164Q9UPV0 1460 aa13.95□□□□□ -0.18
HDGFL3-201ENST00000299633 CCDC66A2RUB6 948 aa13.95□□□□□ -0.18
HDGFL3-201ENST00000299633 HSP90AB3PQ58FF7 597 aa13.94□□□□□ -0.18
HDGFL3-201ENST00000299633 DCTN1Q14203 1278 aa13.94□□□□□ -0.18
HDGFL3-201ENST00000299633 IPO9Q96P70 1041 aaKnown RBP13.94□□□□□ -0.18
HDGFL3-201ENST00000299633 MS4A1P11836 297 aa13.93□□□□□ -0.18
HDGFL3-201ENST00000299633 KIAA1211Q6ZU35 1233 aa13.93□□□□□ -0.18
HDGFL3-201ENST00000299633 CREBRFQ8IUR6 639 aa13.93□□□□□ -0.18
HDGFL3-201ENST00000299633 TSPY4P0CV99 314 aa13.93□□□□□ -0.18
HDGFL3-201ENST00000299633 TSPY10P0CW01 314 aa13.93□□□□□ -0.18
HDGFL3-201ENST00000299633 RUFY1Q96T51 708 aa13.93□□□□□ -0.18
HDGFL3-201ENST00000299633 H0YHG0 523 aa13.92□□□□□ -0.18
HDGFL3-201ENST00000299633 FAM13BQ9NYF5 915 aa13.92□□□□□ -0.18
HDGFL3-201ENST00000299633 NPHP1O15259 732 aa13.91□□□□□ -0.18
HDGFL3-201ENST00000299633 PLCD4Q9BRC7 762 aa13.91□□□□□ -0.18
HDGFL3-201ENST00000299633 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.91□□□□□ -0.18
HDGFL3-201ENST00000299633 TSR1Q2NL82 804 aaKnown RBP13.9□□□□□ -0.18
HDGFL3-201ENST00000299633 CDR1P51861 262 aa13.9□□□□□ -0.18
HDGFL3-201ENST00000299633 ACBD3Q9H3P7 528 aa13.9□□□□□ -0.18
HDGFL3-201ENST00000299633 ISY1Q9ULR0 285 aaKnown RBP13.9□□□□□ -0.18
HDGFL3-201ENST00000299633 BAZ1BQ9UIG0 1483 aaKnown RBP13.89□□□□□ -0.19
HDGFL3-201ENST00000299633 PLEKHG5O94827 1062 aa13.89□□□□□ -0.19
HDGFL3-201ENST00000299633 MTERF4Q7Z6M4 381 aaKnown RBP13.89□□□□□ -0.19
HDGFL3-201ENST00000299633 RGL3Q3MIN7 710 aa13.89□□□□□ -0.19
HDGFL3-201ENST00000299633 WRNQ14191 1432 aaPredicted RBP eCLIP13.89□□□□□ -0.19
HDGFL3-201ENST00000299633 KNSTRNQ9Y448 316 aa13.89□□□□□ -0.19
HDGFL3-201ENST00000299633 ABCC8Q09428 1581 aa13.88□□□□□ -0.19
HDGFL3-201ENST00000299633 INCENPQ9NQS7 918 aa13.87□□□□□ -0.19
HDGFL3-201ENST00000299633 TPM1P09493 284 aa13.87□□□□□ -0.19
HDGFL3-201ENST00000299633 DDX11L8A8MPP1 907 aa13.87□□□□□ -0.19
HDGFL3-201ENST00000299633 ZNF592Q92610 1267 aa13.86□□□□□ -0.19
HDGFL3-201ENST00000299633 TNIKQ9UKE5 1360 aa13.86□□□□□ -0.19
HDGFL3-201ENST00000299633 SIN3AQ96ST3 1273 aa13.86□□□□□ -0.19
HDGFL3-201ENST00000299633 ARGLU1Q9NWB6 273 aaPredicted RBP13.85□□□□□ -0.19
HDGFL3-201ENST00000299633 NEXNQ0ZGT2 675 aa13.85□□□□□ -0.19
HDGFL3-201ENST00000299633 C14orf37Q86TY3 774 aa13.85□□□□□ -0.19
HDGFL3-201ENST00000299633 CFAP53Q96M91 514 aa13.85□□□□□ -0.19
HDGFL3-201ENST00000299633 KIF16BQ96L93 1317 aa13.84□□□□□ -0.19
HDGFL3-201ENST00000299633 EIF4G1Q04637 1599 aaKnown RBP13.84□□□□□ -0.19
HDGFL3-201ENST00000299633 ZRSR2Q15696 482 aaKnown RBP13.84□□□□□ -0.19
HDGFL3-201ENST00000299633 NEUROD2Q15784 382 aa13.84□□□□□ -0.19
HDGFL3-201ENST00000299633 CARD11Q9BXL7 1154 aa13.84□□□□□ -0.19
HDGFL3-201ENST00000299633 NACADO15069 1562 aa13.84□□□□□ -0.19
HDGFL3-201ENST00000299633 FRAT1Q92837 279 aaPredicted RBP13.84□□□□□ -0.19
HDGFL3-201ENST00000299633 CC2D1BQ5T0F9 858 aaKnown RBP13.83□□□□□ -0.19
HDGFL3-201ENST00000299633 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.83□□□□□ -0.2
HDGFL3-201ENST00000299633 KIF27Q86VH2 1401 aa13.83□□□□□ -0.2
HDGFL3-201ENST00000299633 GOLGA6L19H0YKK7 550 aa13.82□□□□□ -0.2
HDGFL3-201ENST00000299633 CROCCQ5TZA2 2017 aa13.82□□□□□ -0.2
HDGFL3-201ENST00000299633 IL27Q8NEV9 243 aa13.82□□□□□ -0.2
HDGFL3-201ENST00000299633 CHMP7Q8WUX9 453 aaPredicted RBP13.82□□□□□ -0.2
HDGFL3-201ENST00000299633 TAF3Q5VWG9 929 aa13.82□□□□□ -0.2
HDGFL3-201ENST00000299633 NPM1P06748 294 aaKnown RBP eCLIP13.82□□□□□ -0.2
HDGFL3-201ENST00000299633 HSP90B2PQ58FF3 399 aa13.81□□□□□ -0.2
HDGFL3-201ENST00000299633 TPM2P07951 284 aa13.81□□□□□ -0.2
HDGFL3-201ENST00000299633 RASSF8Q8NHQ8 419 aa13.81□□□□□ -0.2
HDGFL3-201ENST00000299633 TPD52L1Q16890 204 aaPredicted RBP13.81□□□□□ -0.2
HDGFL3-201ENST00000299633 DEF6Q9H4E7 631 aa13.81□□□□□ -0.2
HDGFL3-201ENST00000299633 PES1O00541 588 aaKnown RBP13.8□□□□□ -0.2
HDGFL3-201ENST00000299633 CCNB3Q8WWL7 1395 aa13.79□□□□□ -0.2
HDGFL3-201ENST00000299633 LEKR1Q6ZMV7 388 aa13.79□□□□□ -0.2
HDGFL3-201ENST00000299633 PPP1R15AO75807 674 aaPredicted RBP13.79□□□□□ -0.2
HDGFL3-201ENST00000299633 SLC4A3P48751 1232 aa13.78□□□□□ -0.2
HDGFL3-201ENST00000299633 GSE1Q14687 1217 aa13.78□□□□□ -0.2
HDGFL3-201ENST00000299633 WIZO95785 1651 aa13.78□□□□□ -0.2
HDGFL3-201ENST00000299633 CLASRPQ8N2M8 674 aaKnown RBP13.78□□□□□ -0.2
HDGFL3-201ENST00000299633 KCNH8Q96L42 1107 aa13.78□□□□□ -0.2
HDGFL3-201ENST00000299633 BRPF3Q9ULD4 1205 aa13.78□□□□□ -0.2
HDGFL3-201ENST00000299633 BAZ1AQ9NRL2 1556 aaPredicted RBP13.77□□□□□ -0.2
HDGFL3-201ENST00000299633 MAPK8IP3Q9UPT6 1336 aa13.77□□□□□ -0.2
HDGFL3-201ENST00000299633 MYO18AQ92614 2054 aaKnown RBP13.76□□□□□ -0.21
HDGFL3-201ENST00000299633 KRI1Q8N9T8 703 aaKnown RBP13.76□□□□□ -0.21
HDGFL3-201ENST00000299633 FOXD4L1Q9NU39 408 aa13.76□□□□□ -0.21
HDGFL3-201ENST00000299633 GOLGA4Q13439 2230 aaKnown RBP13.75□□□□□ -0.21
HDGFL3-201ENST00000299633 GIMAP7Q8NHV1 300 aa13.75□□□□□ -0.21
HDGFL3-201ENST00000299633 GPATCH3Q96I76 525 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms