RNA–Protein interactions for RNA: ENST00000298966.6

SMCO4-201, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO4, Length 1,104 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-201ENST00000298966 SCAPERQ9BY12 1400 aa34.31■■■■□ 3.08
SMCO4-201ENST00000298966 CERKQ8TCT0 537 aa34.31■■■■□ 3.08
SMCO4-201ENST00000298966 CDK13Q14004 1512 aaKnown RBP34.3■■■■□ 3.08
SMCO4-201ENST00000298966 PLCH2O75038 1416 aa34.29■■■■□ 3.08
SMCO4-201ENST00000298966 ATP10AO60312 1499 aa34.22■■■■□ 3.07
SMCO4-201ENST00000298966 ARHGEF12Q9NZN5 1544 aa34.21■■■■□ 3.07
SMCO4-201ENST00000298966 C9orf84Q5VXU9 1444 aa34.21■■■■□ 3.07
SMCO4-201ENST00000298966 EFCAB2Q5VUJ9 269 aa34.19■■■■□ 3.06
SMCO4-201ENST00000298966 PREX1Q8TCU6 1659 aa34.19■■■■□ 3.06
SMCO4-201ENST00000298966 MYO5CQ9NQX4 1742 aa34.18■■■■□ 3.06
SMCO4-201ENST00000298966 ATP1B4Q9UN42 357 aaPredicted RBP34.15■■■■□ 3.06
SMCO4-201ENST00000298966 CDK11AQ9UQ88 783 aaPredicted RBP34.11■■■■□ 3.05
SMCO4-201ENST00000298966 CEBPAP49715 358 aaPredicted RBP34.09■■■■□ 3.05
SMCO4-201ENST00000298966 FMN1Q68DA7 1419 aa34.09■■■■□ 3.05
SMCO4-201ENST00000298966 ZNF518AQ6AHZ1 1483 aa34.07■■■■□ 3.05
SMCO4-201ENST00000298966 DMRT2Q9Y5R5 561 aa34.07■■■■□ 3.04
SMCO4-201ENST00000298966 KIF14Q15058 1648 aa34.04■■■■□ 3.04
SMCO4-201ENST00000298966 SETD1BQ9UPS6 1966 aaKnown RBP34.04■■■■□ 3.04
SMCO4-201ENST00000298966 MYT1LQ9UL68 1186 aa34.03■■■■□ 3.04
SMCO4-201ENST00000298966 ARHGAP5Q13017 1502 aa34.02■■■■□ 3.04
SMCO4-201ENST00000298966 UHRF1BP1Q6BDS2 1440 aa34.02■■■■□ 3.04
SMCO4-201ENST00000298966 STRCQ7RTU9 1775 aa34■■■■□ 3.03
SMCO4-201ENST00000298966 UBTFP17480 764 aaKnown RBP34■■■■□ 3.03
SMCO4-201ENST00000298966 KDM5CP41229 1560 aa34■■■■□ 3.03
SMCO4-201ENST00000298966 TROQ12816 1431 aaPredicted RBP33.98■■■■□ 3.03
SMCO4-201ENST00000298966 AFAP1Q8N556 730 aa33.98■■■■□ 3.03
SMCO4-201ENST00000298966 CLIP1P30622 1438 aa33.96■■■■□ 3.03
SMCO4-201ENST00000298966 ARHGAP35Q9NRY4 1499 aa33.95■■■■□ 3.02
SMCO4-201ENST00000298966 DIP2CQ9Y2E4 1556 aa33.94■■■■□ 3.02
SMCO4-201ENST00000298966 EHMT2Q96KQ7 1210 aa33.94■■■■□ 3.02
SMCO4-201ENST00000298966 REREQ9P2R6 1566 aa33.93■■■■□ 3.02
SMCO4-201ENST00000298966 DISP3Q9P2K9 1392 aa33.92■■■■□ 3.02
SMCO4-201ENST00000298966 ESF1Q9H501 851 aaKnown RBP33.88■■■■□ 3.01
SMCO4-201ENST00000298966 C3P01024 1663 aa33.87■■■■□ 3.01
SMCO4-201ENST00000298966 ABCA6Q8N139 1617 aa33.87■■■■□ 3.01
SMCO4-201ENST00000298966 MLH3Q9UHC1 1453 aa33.87■■■■□ 3.01
SMCO4-201ENST00000298966 CDC42BPBQ9Y5S2 1711 aa33.86■■■■□ 3.01
SMCO4-201ENST00000298966 PTPRTO14522 1441 aa33.86■■■■□ 3.01
SMCO4-201ENST00000298966 AGLP35573 1532 aa33.83■■■■□ 3.01
SMCO4-201ENST00000298966 LRRIQ1Q96JM4 1722 aa33.82■■■■□ 3
SMCO4-201ENST00000298966 ILDR2Q71H61 639 aa33.8■■■■□ 3
SMCO4-201ENST00000298966 PREX2Q70Z35 1606 aa33.79■■■■□ 3
SMCO4-201ENST00000298966 ABCC1P33527 1531 aa33.78■■■■□ 3
SMCO4-201ENST00000298966 TRAPPC8Q9Y2L5 1435 aa33.78■■■■□ 3
SMCO4-201ENST00000298966 ITSN2Q9NZM3 1697 aa33.76■■■□□ 2.99
SMCO4-201ENST00000298966 SOCS7O14512 581 aa33.75■■■□□ 2.99
SMCO4-201ENST00000298966 CNTLNQ9NXG0 1405 aa33.73■■■□□ 2.99
SMCO4-201ENST00000298966 KIDINS220Q9ULH0 1771 aa33.7■■■□□ 2.99
SMCO4-201ENST00000298966 SPATA31D1Q6ZQQ2 1576 aa33.69■■■□□ 2.98
SMCO4-201ENST00000298966 LTBP4Q8N2S1 1624 aa33.69■■■□□ 2.98
SMCO4-201ENST00000298966 CCDC18Q5T9S5 1454 aa33.69■■■□□ 2.98
SMCO4-201ENST00000298966 NCOA1Q15788 1441 aa33.68■■■□□ 2.98
SMCO4-201ENST00000298966 IQSEC2Q5JU85 1478 aa33.67■■■□□ 2.98
SMCO4-201ENST00000298966 CDC42BPAQ5VT25 1732 aa33.64■■■□□ 2.98
SMCO4-201ENST00000298966 CASKIN1Q8WXD9 1431 aa33.63■■■□□ 2.97
SMCO4-201ENST00000298966 MROH2AA6NES4 1674 aa33.61■■■□□ 2.97
SMCO4-201ENST00000298966 NPATQ14207 1427 aa33.6■■■□□ 2.97
SMCO4-201ENST00000298966 CAMSAP1Q5T5Y3 1602 aa33.58■■■□□ 2.97
SMCO4-201ENST00000298966 SAMD9LQ8IVG5 1584 aa33.58■■■□□ 2.97
SMCO4-201ENST00000298966 ZNF777Q9ULD5 760 aaPredicted RBP33.56■■■□□ 2.96
SMCO4-201ENST00000298966 ZMYM3Q14202 1370 aa33.54■■■□□ 2.96
SMCO4-201ENST00000298966 SPAG9O60271 1321 aaKnown RBP33.53■■■□□ 2.96
SMCO4-201ENST00000298966 SUPT6HQ7KZ85 1726 aaKnown RBP33.52■■■□□ 2.96
SMCO4-201ENST00000298966 SYCP2Q9BX26 1530 aa33.5■■■□□ 2.95
SMCO4-201ENST00000298966 LOC105371045A0A1W2PR82 267 aa33.49■■■□□ 2.95
SMCO4-201ENST00000298966 FYCO1Q9BQS8 1478 aa33.47■■■□□ 2.95
SMCO4-201ENST00000298966 NCKAP5LQ9HCH0 1330 aa33.47■■■□□ 2.95
SMCO4-201ENST00000298966 CLTCQ00610 1675 aaKnown RBP33.45■■■□□ 2.95
SMCO4-201ENST00000298966 HNRNPMP52272 730 aaKnown RBP eCLIP33.45■■■□□ 2.958e-7■■■■■ 34.2
SMCO4-201ENST00000298966 ATP7AQ04656 1500 aa33.44■■■□□ 2.94
SMCO4-201ENST00000298966 GPATCH8Q9UKJ3 1502 aaKnown RBP33.44■■■□□ 2.94
SMCO4-201ENST00000298966 ZNF335Q9H4Z2 1342 aaPredicted RBP33.43■■■□□ 2.94
SMCO4-201ENST00000298966 ZNF142P52746 1687 aaPredicted RBP33.42■■■□□ 2.94
SMCO4-201ENST00000298966 MYO3AQ8NEV4 1616 aa33.42■■■□□ 2.94
SMCO4-201ENST00000298966 UBAP1LF5GYI3 381 aa33.41■■■□□ 2.94
SMCO4-201ENST00000298966 PKD2Q13563 968 aa33.41■■■□□ 2.94
SMCO4-201ENST00000298966 PLA2R1Q13018 1463 aa33.41■■■□□ 2.94
SMCO4-201ENST00000298966 PLEKHH2Q8IVE3 1493 aa33.4■■■□□ 2.94
SMCO4-201ENST00000298966 PLXNC1O60486 1568 aa33.39■■■□□ 2.94
SMCO4-201ENST00000298966 A2MP01023 1474 aa33.39■■■□□ 2.94
SMCO4-201ENST00000298966 KIAA1107Q9UPP5 1409 aa33.39■■■□□ 2.94
SMCO4-201ENST00000298966 INO80Q9ULG1 1556 aaPredicted RBP33.38■■■□□ 2.93
SMCO4-201ENST00000298966 CEP170BQ9Y4F5 1589 aaPredicted RBP33.38■■■□□ 2.93
SMCO4-201ENST00000298966 PTPRKQ15262 1439 aa33.36■■■□□ 2.93
SMCO4-201ENST00000298966 GGT6Q6P531 493 aa33.36■■■□□ 2.93
SMCO4-201ENST00000298966 CFDP1Q9UEE9 299 aaPredicted RBP33.36■■■□□ 2.93
SMCO4-201ENST00000298966 TCOF1Q13428 1488 aaKnown RBP33.33■■■□□ 2.93
SMCO4-201ENST00000298966 CCNB3Q8WWL7 1395 aa33.32■■■□□ 2.92
SMCO4-201ENST00000298966 PPP6R1Q9UPN7 881 aa33.29■■■□□ 2.92
SMCO4-201ENST00000298966 ADGBQ8N7X0 1667 aa33.28■■■□□ 2.92
SMCO4-201ENST00000298966 A2ML1A8K2U0 1454 aa33.22■■■□□ 2.91
SMCO4-201ENST00000298966 MTUS2Q5JR59 1369 aa33.21■■■□□ 2.91
SMCO4-201ENST00000298966 DNMT1P26358 1616 aaKnown RBP33.18■■■□□ 2.9
SMCO4-201ENST00000298966 ZNF644Q9H582 1327 aaPredicted RBP33.13■■■□□ 2.89
SMCO4-201ENST00000298966 SCAF1Q9H7N4 1312 aaKnown RBP33.13■■■□□ 2.89
SMCO4-201ENST00000298966 POLR1AO95602 1720 aaPredicted RBP33.13■■■□□ 2.89
SMCO4-201ENST00000298966 RTEL1-TNFRSF6BF6WH68 1400 aa33.11■■■□□ 2.89
SMCO4-201ENST00000298966 TIAM1Q13009 1591 aa33.11■■■□□ 2.89
SMCO4-201ENST00000298966 MBD5Q9P267 1494 aa33.1■■■□□ 2.89
SMCO4-201ENST00000298966 DHX29Q7Z478 1369 aaKnown RBP33.09■■■□□ 2.89
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms