RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 ZNF644Q9H582 1327 aaPredicted RBP23.05■■□□□ 1.28
LSM6-201ENST00000296581 PREX2Q70Z35 1606 aa23.04■■□□□ 1.28
LSM6-201ENST00000296581 NAIPQ13075 1403 aa23.04■■□□□ 1.28
LSM6-201ENST00000296581 ABCC5O15440 1437 aa23.03■■□□□ 1.28
LSM6-201ENST00000296581 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.03■■□□□ 1.283e-11■■■■■ 27.7
LSM6-201ENST00000296581 GCC2Q8IWJ2 1684 aa23.03■■□□□ 1.28
LSM6-201ENST00000296581 TTC37Q6PGP7 1564 aa23.02■■□□□ 1.28
LSM6-201ENST00000296581 CDC42BPBQ9Y5S2 1711 aa23.01■■□□□ 1.27
LSM6-201ENST00000296581 ROCK1Q13464 1354 aa22.99■■□□□ 1.27
LSM6-201ENST00000296581 CROCC2H7BZ55 1655 aa22.98■■□□□ 1.27
LSM6-201ENST00000296581 MYO5CQ9NQX4 1742 aa22.97■■□□□ 1.27
LSM6-201ENST00000296581 CHIC2Q9UKJ5 165 aa22.94■■□□□ 1.26
LSM6-201ENST00000296581 ZNF777Q9ULD5 760 aaPredicted RBP22.94■■□□□ 1.26
LSM6-201ENST00000296581 WDR7Q9Y4E6 1490 aa22.93■■□□□ 1.26
LSM6-201ENST00000296581 ADGBQ8N7X0 1667 aa22.93■■□□□ 1.26
LSM6-201ENST00000296581 SAMD9LQ8IVG5 1584 aa22.93■■□□□ 1.26
LSM6-201ENST00000296581 MAPKBP1O60336 1514 aa22.92■■□□□ 1.26
LSM6-201ENST00000296581 ARHGEF5Q12774 1597 aa22.92■■□□□ 1.26
LSM6-201ENST00000296581 RRP7BPQ9NSQ0 103 aa22.91■■□□□ 1.26
LSM6-201ENST00000296581 ADGRL2O95490 1459 aa22.9■■□□□ 1.26
LSM6-201ENST00000296581 SHANK2Q9UPX8 1470 aa22.9■■□□□ 1.26
LSM6-201ENST00000296581 KCNH8Q96L42 1107 aa22.9■■□□□ 1.26
LSM6-201ENST00000296581 ARHGAP5Q13017 1502 aa22.89■■□□□ 1.25
LSM6-201ENST00000296581 MBD5Q9P267 1494 aa22.88■■□□□ 1.25
LSM6-201ENST00000296581 PLCH2O75038 1416 aa22.88■■□□□ 1.25
LSM6-201ENST00000296581 KDM6BO15054 1643 aa22.87■■□□□ 1.25
LSM6-201ENST00000296581 ASXL2Q76L83 1435 aa22.86■■□□□ 1.25
LSM6-201ENST00000296581 ARAP3Q8WWN8 1544 aa22.86■■□□□ 1.25
LSM6-201ENST00000296581 NCOA1Q15788 1441 aa22.85■■□□□ 1.25
LSM6-201ENST00000296581 ABCA9Q8IUA7 1624 aa22.84■■□□□ 1.25
LSM6-201ENST00000296581 PLEKHH2Q8IVE3 1493 aa22.84■■□□□ 1.25
LSM6-201ENST00000296581 CCDC141Q6ZP82 1450 aa22.82■■□□□ 1.24
LSM6-201ENST00000296581 KIAA1107Q9UPP5 1409 aa22.82■■□□□ 1.24
LSM6-201ENST00000296581 RIMBP3CA6NJZ7 1639 aa22.82■■□□□ 1.24
LSM6-201ENST00000296581 RIMBP3BA6NNM3 1639 aa22.82■■□□□ 1.24
LSM6-201ENST00000296581 RIMBP3Q9UFD9 1639 aa22.82■■□□□ 1.24
LSM6-201ENST00000296581 ACIN1Q9UKV3 1341 aaKnown RBP22.81■■□□□ 1.24
LSM6-201ENST00000296581 C9orf84Q5VXU9 1444 aa22.81■■□□□ 1.24
LSM6-201ENST00000296581 NPM1P06748 294 aaKnown RBP eCLIP22.81■■□□□ 1.24
LSM6-201ENST00000296581 RSPH4AQ5TD94 716 aa22.81■■□□□ 1.24
LSM6-201ENST00000296581 SYCP2Q9BX26 1530 aa22.81■■□□□ 1.24
LSM6-201ENST00000296581 ANKRD30AQ9BXX3 1397 aa22.8■■□□□ 1.24
LSM6-201ENST00000296581 HNRNPMP52272 730 aaKnown RBP eCLIP22.79■■□□□ 1.24
LSM6-201ENST00000296581 EFCAB2Q5VUJ9 269 aa22.77■■□□□ 1.24
LSM6-201ENST00000296581 MAST1Q9Y2H9 1570 aa22.77■■□□□ 1.24
LSM6-201ENST00000296581 TSPY4P0CV99 314 aa22.75■■□□□ 1.23
LSM6-201ENST00000296581 TSPY10P0CW01 314 aa22.75■■□□□ 1.23
LSM6-201ENST00000296581 ABCC1P33527 1531 aa22.75■■□□□ 1.23
LSM6-201ENST00000296581 ARHGEF12Q9NZN5 1544 aa22.73■■□□□ 1.23
LSM6-201ENST00000296581 SCAF1Q9H7N4 1312 aaKnown RBP22.7■■□□□ 1.22
LSM6-201ENST00000296581 DENND4BO75064 1496 aaPredicted RBP22.7■■□□□ 1.22
LSM6-201ENST00000296581 ANKRD50Q9ULJ7 1429 aa22.69■■□□□ 1.22
LSM6-201ENST00000296581 TRIM52Q96A61 297 aa22.68■■□□□ 1.22
LSM6-201ENST00000296581 FANCAO15360 1455 aa22.67■■□□□ 1.22
LSM6-201ENST00000296581 PLXNC1O60486 1568 aa22.67■■□□□ 1.22
LSM6-201ENST00000296581 CYB5RLQ6IPT4 315 aa22.66■■□□□ 1.22
LSM6-201ENST00000296581 KIF15Q9NS87 1388 aa22.66■■□□□ 1.22
LSM6-201ENST00000296581 SIN3AQ96ST3 1273 aa22.64■■□□□ 1.21
LSM6-201ENST00000296581 MPHOSPH9Q99550 1183 aa22.64■■□□□ 1.21
LSM6-201ENST00000296581 TRAPPC8Q9Y2L5 1435 aa22.63■■□□□ 1.21
LSM6-201ENST00000296581 TIMELESSQ9UNS1 1208 aa22.62■■□□□ 1.21
LSM6-201ENST00000296581 PZPP20742 1482 aa22.61■■□□□ 1.21
LSM6-201ENST00000296581 CFAP74Q9C0B2 1584 aa22.59■■□□□ 1.21
LSM6-201ENST00000296581 CD109Q6YHK3 1445 aa22.59■■□□□ 1.21
LSM6-201ENST00000296581 KDM5DQ9BY66 1539 aa22.58■■□□□ 1.21
LSM6-201ENST00000296581 ADGRL1O94910 1474 aa22.58■■□□□ 1.2
LSM6-201ENST00000296581 RTEL1-TNFRSF6BF6WH68 1400 aa22.57■■□□□ 1.2
LSM6-201ENST00000296581 NEUROD1Q13562 356 aa22.56■■□□□ 1.2
LSM6-201ENST00000296581 DUOX2Q9NRD8 1548 aa22.56■■□□□ 1.2
LSM6-201ENST00000296581 ZFYVE16Q7Z3T8 1539 aa22.55■■□□□ 1.2
LSM6-201ENST00000296581 GLI2P10070 1586 aa22.54■■□□□ 1.2
LSM6-201ENST00000296581 SCAPERQ9BY12 1400 aa22.54■■□□□ 1.2
LSM6-201ENST00000296581 INO80Q9ULG1 1556 aaPredicted RBP22.53■■□□□ 1.2
LSM6-201ENST00000296581 SLC4A1APQ9BWU0 796 aaKnown RBP22.53■■□□□ 1.2
LSM6-201ENST00000296581 MAP3K4Q9Y6R4 1608 aa22.52■■□□□ 1.2
LSM6-201ENST00000296581 SPAG9O60271 1321 aaKnown RBP22.52■■□□□ 1.19
LSM6-201ENST00000296581 UNC13BO14795 1591 aa22.51■■□□□ 1.19
LSM6-201ENST00000296581 ERBINQ96RT1 1412 aa22.51■■□□□ 1.19
LSM6-201ENST00000296581 ANKRD30BQ9BXX2 1392 aa22.51■■□□□ 1.19
LSM6-201ENST00000296581 AFAP1Q8N556 730 aa22.51■■□□□ 1.19
LSM6-201ENST00000296581 NUP155O75694 1391 aa22.49■■□□□ 1.19
LSM6-201ENST00000296581 ATP7AQ04656 1500 aa22.49■■□□□ 1.19
LSM6-201ENST00000296581 ZNF316A6NFI3 1004 aaPredicted RBP22.48■■□□□ 1.19
LSM6-201ENST00000296581 NEO1Q92859 1461 aa22.48■■□□□ 1.19
LSM6-201ENST00000296581 TONSLQ96HA7 1378 aa22.47■■□□□ 1.19
LSM6-201ENST00000296581 DIP2BQ9P265 1576 aa22.46■■□□□ 1.19
LSM6-201ENST00000296581 FOXD1Q16676 465 aa22.46■■□□□ 1.19
LSM6-201ENST00000296581 ZNF518AQ6AHZ1 1483 aa22.45■■□□□ 1.19
LSM6-201ENST00000296581 MAGI2Q86UL8 1455 aa22.44■■□□□ 1.18
LSM6-201ENST00000296581 KDM5CP41229 1560 aa22.43■■□□□ 1.18
LSM6-201ENST00000296581 FAM135AQ9P2D6 1515 aa22.43■■□□□ 1.18
LSM6-201ENST00000296581 POGZQ7Z3K3 1410 aa22.43■■□□□ 1.18
LSM6-201ENST00000296581 PPP1R15AO75807 674 aaPredicted RBP22.43■■□□□ 1.18
LSM6-201ENST00000296581 RPRD2Q5VT52 1461 aaKnown RBP22.43■■□□□ 1.18
LSM6-201ENST00000296581 KIDINS220Q9ULH0 1771 aa22.42■■□□□ 1.18
LSM6-201ENST00000296581 IQGAP3Q86VI3 1631 aa22.41■■□□□ 1.18
LSM6-201ENST00000296581 PKD2Q13563 968 aa22.41■■□□□ 1.18
LSM6-201ENST00000296581 MLH3Q9UHC1 1453 aa22.37■■□□□ 1.17
LSM6-201ENST00000296581 DEPDC5O75140 1603 aa22.36■■□□□ 1.17
LSM6-201ENST00000296581 EIF2AK4Q9P2K8 1649 aaKnown RBP22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms