RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 HNRNPMP52272 730 aaKnown RBP eCLIP16.39■□□□□ 0.219e-7■■■□□ 19.2
CUX1-202ENST00000292538 ABCC5O15440 1437 aa16.35■□□□□ 0.21
CUX1-202ENST00000292538 DAPK1P53355 1430 aa16.35■□□□□ 0.21
CUX1-202ENST00000292538 ATP10BO94823 1461 aa16.35■□□□□ 0.21
CUX1-202ENST00000292538 GTF3C3Q9Y5Q9 886 aa16.34■□□□□ 0.21
CUX1-202ENST00000292538 TCOF1Q13428 1488 aaKnown RBP16.34■□□□□ 0.21
CUX1-202ENST00000292538 TSPY4P0CV99 314 aa16.33■□□□□ 0.21
CUX1-202ENST00000292538 TSPY10P0CW01 314 aa16.33■□□□□ 0.21
CUX1-202ENST00000292538 ZNF326Q5BKZ1 582 aaKnown RBP16.32■□□□□ 0.2
CUX1-202ENST00000292538 TIMELESSQ9UNS1 1208 aa16.32■□□□□ 0.2
CUX1-202ENST00000292538 GPATCH8Q9UKJ3 1502 aaKnown RBP16.31■□□□□ 0.2
CUX1-202ENST00000292538 KDM6BO15054 1643 aa16.3■□□□□ 0.2
CUX1-202ENST00000292538 KIF14Q15058 1648 aa16.29■□□□□ 0.2
CUX1-202ENST00000292538 L3MBTL2Q969R5 705 aa16.29■□□□□ 0.2
CUX1-202ENST00000292538 CAMSAP2Q08AD1 1489 aa16.28■□□□□ 0.2
CUX1-202ENST00000292538 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.26■□□□□ 0.191e-6■■□□□ 13.7
CUX1-202ENST00000292538 PKD2Q13563 968 aa16.25■□□□□ 0.19
CUX1-202ENST00000292538 ERCC6L2Q5T890 1561 aa16.24■□□□□ 0.19
CUX1-202ENST00000292538 CHD1O14646 1710 aa16.23■□□□□ 0.19
CUX1-202ENST00000292538 ANKRD30AQ9BXX3 1397 aa16.22■□□□□ 0.19
CUX1-202ENST00000292538 AKNAQ7Z591 1439 aa16.22■□□□□ 0.19
CUX1-202ENST00000292538 CNGB1Q14028 1251 aaPredicted RBP16.22■□□□□ 0.19
CUX1-202ENST00000292538 ABCA8O94911 1581 aa16.21■□□□□ 0.19
CUX1-202ENST00000292538 NCOA1Q15788 1441 aa16.21■□□□□ 0.19
CUX1-202ENST00000292538 ROCK1Q13464 1354 aa16.21■□□□□ 0.19
CUX1-202ENST00000292538 MYT1LQ9UL68 1186 aa16.21■□□□□ 0.19
CUX1-202ENST00000292538 POLR3GLQ9BT43 218 aa16.2■□□□□ 0.18
CUX1-202ENST00000292538 NUP155O75694 1391 aa16.2■□□□□ 0.18
CUX1-202ENST00000292538 DENND4BO75064 1496 aaPredicted RBP16.19■□□□□ 0.18
CUX1-202ENST00000292538 HSPA5P11021 654 aaKnown RBP16.19■□□□□ 0.18
CUX1-202ENST00000292538 KDM2AQ9Y2K7 1162 aa16.18■□□□□ 0.18
CUX1-202ENST00000292538 ANKRD50Q9ULJ7 1429 aa16.17■□□□□ 0.18
CUX1-202ENST00000292538 DNMT1P26358 1616 aaKnown RBP16.16■□□□□ 0.18
CUX1-202ENST00000292538 ANP32CO43423 234 aa16.16■□□□□ 0.18
CUX1-202ENST00000292538 C9orf84Q5VXU9 1444 aa16.16■□□□□ 0.18
CUX1-202ENST00000292538 NBPF8Q3BBV2 869 aa16.15■□□□□ 0.18
CUX1-202ENST00000292538 EIF4G2P78344 907 aaKnown RBP eCLIP16.15■□□□□ 0.181e-6■■■■■ 32.2
CUX1-202ENST00000292538 ANKRD30BQ9BXX2 1392 aa16.14■□□□□ 0.17
CUX1-202ENST00000292538 KIF15Q9NS87 1388 aa16.14■□□□□ 0.17
CUX1-202ENST00000292538 ABCC10Q5T3U5 1492 aa16.13■□□□□ 0.17
CUX1-202ENST00000292538 GCC2Q8IWJ2 1684 aa16.11■□□□□ 0.17
CUX1-202ENST00000292538 RGL3Q3MIN7 710 aa16.11■□□□□ 0.17
CUX1-202ENST00000292538 SLC24A1O60721 1099 aa16.11■□□□□ 0.17
CUX1-202ENST00000292538 ARHGAP5Q13017 1502 aa16.1■□□□□ 0.17
CUX1-202ENST00000292538 ITSN2Q9NZM3 1697 aa16.09■□□□□ 0.17
CUX1-202ENST00000292538 AFAP1Q8N556 730 aa16.08■□□□□ 0.16
CUX1-202ENST00000292538 EFCAB2Q5VUJ9 269 aa16.08■□□□□ 0.16
CUX1-202ENST00000292538 OSCARQ8IYS5 282 aa16.07■□□□□ 0.16
CUX1-202ENST00000292538 PZPP20742 1482 aa16.06■□□□□ 0.16
CUX1-202ENST00000292538 C11orf95C9JLR9 678 aaPredicted RBP16.06■□□□□ 0.16
CUX1-202ENST00000292538 DCAF11Q8TEB1 546 aa16.06■□□□□ 0.16
CUX1-202ENST00000292538 WASHC2AQ641Q2 1341 aa16.06■□□□□ 0.16
CUX1-202ENST00000292538 CDC42BPAQ5VT25 1732 aa16.05■□□□□ 0.16
CUX1-202ENST00000292538 ABCC2Q92887 1545 aa16.04■□□□□ 0.16
CUX1-202ENST00000292538 RSPH4AQ5TD94 716 aa16.04■□□□□ 0.16
CUX1-202ENST00000292538 ADCY10Q96PN6 1610 aa16.03■□□□□ 0.16
CUX1-202ENST00000292538 KIAA1107Q9UPP5 1409 aa16.03■□□□□ 0.16
CUX1-202ENST00000292538 MBD5Q9P267 1494 aa16.03■□□□□ 0.16
CUX1-202ENST00000292538 NPM1P06748 294 aaKnown RBP eCLIP16.03■□□□□ 0.16
CUX1-202ENST00000292538 RPRD2Q5VT52 1461 aaKnown RBP16.03■□□□□ 0.16
CUX1-202ENST00000292538 SYCP2Q9BX26 1530 aa16.02■□□□□ 0.16
CUX1-202ENST00000292538 CCDC141Q6ZP82 1450 aa16.02■□□□□ 0.15
CUX1-202ENST00000292538 KDM5BQ9UGL1 1544 aa16.02■□□□□ 0.15
CUX1-202ENST00000292538 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.01■□□□□ 0.157e-8■■■■■ 32
CUX1-202ENST00000292538 TTC37Q6PGP7 1564 aa16.01■□□□□ 0.15
CUX1-202ENST00000292538 ADGRL2O95490 1459 aa16■□□□□ 0.15
CUX1-202ENST00000292538 SHROOM2Q13796 1616 aa15.99■□□□□ 0.15
CUX1-202ENST00000292538 SAMD9LQ8IVG5 1584 aa15.99■□□□□ 0.15
CUX1-202ENST00000292538 CARD11Q9BXL7 1154 aa15.98■□□□□ 0.15
CUX1-202ENST00000292538 SPAG9O60271 1321 aaKnown RBP15.98■□□□□ 0.15
CUX1-202ENST00000292538 CLASP1Q7Z460 1538 aa15.96■□□□□ 0.15
CUX1-202ENST00000292538 PLEKHH2Q8IVE3 1493 aa15.95■□□□□ 0.14
CUX1-202ENST00000292538 PLCH2O75038 1416 aa15.94■□□□□ 0.14
CUX1-202ENST00000292538 TRAPPC8Q9Y2L5 1435 aa15.94■□□□□ 0.14
CUX1-202ENST00000292538 CDC42BPBQ9Y5S2 1711 aa15.94■□□□□ 0.14
CUX1-202ENST00000292538 TEX14Q8IWB6 1497 aa15.93■□□□□ 0.14
CUX1-202ENST00000292538 SHANK2Q9UPX8 1470 aa15.93■□□□□ 0.14
CUX1-202ENST00000292538 ARHGEF12Q9NZN5 1544 aa15.93■□□□□ 0.14
CUX1-202ENST00000292538 ADGBQ8N7X0 1667 aa15.93■□□□□ 0.14
CUX1-202ENST00000292538 KIF7Q2M1P5 1343 aa15.92■□□□□ 0.14
CUX1-202ENST00000292538 ZCCHC11Q5TAX3 1644 aaKnown RBP15.91■□□□□ 0.14
CUX1-202ENST00000292538 KIF3BO15066 747 aa15.91■□□□□ 0.14
CUX1-202ENST00000292538 SENP3-EIF4A1A0A087X0R7 540 aa15.91■□□□□ 0.14
CUX1-202ENST00000292538 PREX2Q70Z35 1606 aa15.9■□□□□ 0.14
CUX1-202ENST00000292538 CROCC2H7BZ55 1655 aa15.9■□□□□ 0.14
CUX1-202ENST00000292538 FAM9BQ8IZU0 186 aa15.9■□□□□ 0.14
CUX1-202ENST00000292538 USP47Q96K76 1375 aa15.9■□□□□ 0.14
CUX1-202ENST00000292538 CCDC7Q96M83 1385 aa15.9■□□□□ 0.14
CUX1-202ENST00000292538 ST20-MTHFSA0A0A6YYL1 179 aa15.89■□□□□ 0.13
CUX1-202ENST00000292538 CYB5RLQ6IPT4 315 aa15.89■□□□□ 0.13
CUX1-202ENST00000292538 CCDC144AA2RUR9 1427 aa15.89■□□□□ 0.13
CUX1-202ENST00000292538 CCER2I3L3R5 266 aa15.89■□□□□ 0.13
CUX1-202ENST00000292538 CCDC184Q52MB2 194 aa15.89■□□□□ 0.13
CUX1-202ENST00000292538 HNRNPUQ00839 825 aaKnown RBP eCLIP15.88■□□□□ 0.131e-6■■■■□ 21.8
CUX1-202ENST00000292538 BCANQ96GW7 911 aa15.88■□□□□ 0.13
CUX1-202ENST00000292538 NBPF1Q3BBV0 1214 aa15.88■□□□□ 0.13
CUX1-202ENST00000292538 SCAPERQ9BY12 1400 aa15.87■□□□□ 0.13
CUX1-202ENST00000292538 ARHGEF5Q12774 1597 aa15.87■□□□□ 0.13
CUX1-202ENST00000292538 ASXL2Q76L83 1435 aa15.87■□□□□ 0.13
CUX1-202ENST00000292538 FAM135AQ9P2D6 1515 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms