RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 CCDC184Q52MB2 194 aa12.2□□□□□ -0.46
PDGFC-201ENST00000274071 TAF7LQ5H9L4 462 aa12.19□□□□□ -0.46
PDGFC-201ENST00000274071 AKNAQ7Z591 1439 aa12.18□□□□□ -0.46
PDGFC-201ENST00000274071 TDRD9Q8NDG6 1382 aaKnown RBP12.18□□□□□ -0.46
PDGFC-201ENST00000274071 BBXQ8WY36 941 aaPredicted RBP12.17□□□□□ -0.46
PDGFC-201ENST00000274071 RNF123Q5XPI4 1314 aa12.17□□□□□ -0.46
PDGFC-201ENST00000274071 FAM9BQ8IZU0 186 aa12.16□□□□□ -0.46
PDGFC-201ENST00000274071 ARID4BQ4LE39 1312 aaPredicted RBP12.15□□□□□ -0.46
PDGFC-201ENST00000274071 KANK4Q5T7N3 995 aaPredicted RBP12.15□□□□□ -0.47
PDGFC-201ENST00000274071 NAP1L2Q9ULW6 460 aaPredicted RBP12.15□□□□□ -0.47
PDGFC-201ENST00000274071 CUL7Q14999 1698 aa12.15□□□□□ -0.47
PDGFC-201ENST00000274071 MS4A1P11836 297 aa12.14□□□□□ -0.47
PDGFC-201ENST00000274071 GAPVD1Q14C86 1478 aa12.13□□□□□ -0.47
PDGFC-201ENST00000274071 GTF2E1P29083 439 aaPredicted RBP12.13□□□□□ -0.47
PDGFC-201ENST00000274071 POGKQ9P215 609 aa12.12□□□□□ -0.47
PDGFC-201ENST00000274071 ABCA5Q8WWZ7 1642 aa12.12□□□□□ -0.47
PDGFC-201ENST00000274071 RAB3GAP2Q9H2M9 1393 aa12.12□□□□□ -0.47
PDGFC-201ENST00000274071 L1TD1Q5T7N2 865 aaKnown RBP12.12□□□□□ -0.47
PDGFC-201ENST00000274071 CHMP4BQ9H444 224 aaKnown RBP12.12□□□□□ -0.47
PDGFC-201ENST00000274071 P3H3Q8IVL6 736 aa12.11□□□□□ -0.47
PDGFC-201ENST00000274071 SMG6Q86US8 1419 aaKnown RBP12.1□□□□□ -0.47
PDGFC-201ENST00000274071 TARBP1Q13395 1621 aaKnown RBP12.1□□□□□ -0.47
PDGFC-201ENST00000274071 MRC2Q9UBG0 1479 aa12.1□□□□□ -0.47
PDGFC-201ENST00000274071 RRBP1Q9P2E9 1410 aaKnown RBP12.09□□□□□ -0.47
PDGFC-201ENST00000274071 STAC3Q96MF2 364 aa12.08□□□□□ -0.48
PDGFC-201ENST00000274071 KLHL34Q8N239 644 aa12.08□□□□□ -0.48
PDGFC-201ENST00000274071 NUDCQ9Y266 331 aa12.08□□□□□ -0.48
PDGFC-201ENST00000274071 TPM2P07951 284 aa12.07□□□□□ -0.48
PDGFC-201ENST00000274071 XRCC6P12956 609 aaKnown RBP eCLIP12.07□□□□□ -0.48
PDGFC-201ENST00000274071 PAXIP1Q6ZW49 1069 aaPredicted RBP12.07□□□□□ -0.48
PDGFC-201ENST00000274071 CTTNBP2Q8WZ74 1663 aa12.06□□□□□ -0.48
PDGFC-201ENST00000274071 MRS2Q9HD23 443 aa12.06□□□□□ -0.48
PDGFC-201ENST00000274071 FHAD1B1AJZ9 1412 aa12.05□□□□□ -0.48
PDGFC-201ENST00000274071 AQRO60306 1485 aaKnown RBP eCLIP12.04□□□□□ -0.48
PDGFC-201ENST00000274071 FHOD3Q2V2M9 1422 aa12.04□□□□□ -0.48
PDGFC-201ENST00000274071 CANXP27824 592 aaKnown RBP12.04□□□□□ -0.48
PDGFC-201ENST00000274071 ATP1B4Q9UN42 357 aaPredicted RBP12.04□□□□□ -0.48
PDGFC-201ENST00000274071 EFCAB5A4FU69 1503 aa12.03□□□□□ -0.48
PDGFC-201ENST00000274071 PANK2Q9BZ23 570 aa12.03□□□□□ -0.48
PDGFC-201ENST00000274071 ZHX1Q9UKY1 873 aaPredicted RBP12.03□□□□□ -0.48
PDGFC-201ENST00000274071 ARXQ96QS3 562 aa12.03□□□□□ -0.48
PDGFC-201ENST00000274071 CCNB3Q8WWL7 1395 aa12.03□□□□□ -0.48
PDGFC-201ENST00000274071 TIAM1Q13009 1591 aa12.02□□□□□ -0.49
PDGFC-201ENST00000274071 MAP3K1Q13233 1512 aa12.02□□□□□ -0.49
PDGFC-201ENST00000274071 IPO4Q8TEX9 1081 aaKnown RBP12.02□□□□□ -0.49
PDGFC-201ENST00000274071 EXOC6Q8TAG9 804 aa12.02□□□□□ -0.49
PDGFC-201ENST00000274071 PRKRIP1Q9H875 184 aaPredicted RBP12.02□□□□□ -0.49
PDGFC-201ENST00000274071 SMAP1Q8IYB5 467 aaPredicted RBP12□□□□□ -0.49
PDGFC-201ENST00000274071 PBRM1Q86U86 1689 aa12□□□□□ -0.49
PDGFC-201ENST00000274071 ESPNB1AK53 854 aa12□□□□□ -0.49
PDGFC-201ENST00000274071 SKAP1Q86WV1 359 aa12□□□□□ -0.49
PDGFC-201ENST00000274071 WDR62O43379 1518 aa12□□□□□ -0.49
PDGFC-201ENST00000274071 ERCC6Q03468 1493 aa12□□□□□ -0.49
PDGFC-201ENST00000274071 PCF11O94913 1555 aaKnown RBP12□□□□□ -0.49
PDGFC-201ENST00000274071 ERBB4Q15303 1308 aa11.99□□□□□ -0.49
PDGFC-201ENST00000274071 RSPH4AQ5TD94 716 aa11.99□□□□□ -0.49
PDGFC-201ENST00000274071 IFT140Q96RY7 1462 aa11.99□□□□□ -0.49
PDGFC-201ENST00000274071 LRRC9Q6ZRR7 1453 aa11.98□□□□□ -0.49
PDGFC-201ENST00000274071 FSD2A1L4K1 749 aa11.98□□□□□ -0.49
PDGFC-201ENST00000274071 GOLGA6L3A6NEY3 463 aa11.98□□□□□ -0.49
PDGFC-201ENST00000274071 CNGB1Q14028 1251 aaPredicted RBP11.98□□□□□ -0.49
PDGFC-201ENST00000274071 ZNF608Q9ULD9 1512 aaPredicted RBP11.97□□□□□ -0.49
PDGFC-201ENST00000274071 GRIN2BQ13224 1484 aa11.97□□□□□ -0.49
PDGFC-201ENST00000274071 SETD5Q9C0A6 1442 aa11.97□□□□□ -0.49
PDGFC-201ENST00000274071 FOXD1Q16676 465 aa11.97□□□□□ -0.49
PDGFC-201ENST00000274071 FYCO1Q9BQS8 1478 aa11.97□□□□□ -0.49
PDGFC-201ENST00000274071 FMN1Q68DA7 1419 aa11.97□□□□□ -0.49
PDGFC-201ENST00000274071 CASKIN1Q8WXD9 1431 aa11.97□□□□□ -0.49
PDGFC-201ENST00000274071 KIAA1211Q6ZU35 1233 aa11.96□□□□□ -0.49
PDGFC-201ENST00000274071 RIPK4P57078 832 aa11.95□□□□□ -0.5
PDGFC-201ENST00000274071 SAMD9Q5K651 1589 aa11.95□□□□□ -0.5
PDGFC-201ENST00000274071 ADAMTS12P58397 1594 aa11.95□□□□□ -0.5
PDGFC-201ENST00000274071 CFAP43Q8NDM7 1665 aa11.94□□□□□ -0.5
PDGFC-201ENST00000274071 TMEM51Q9NW97 253 aa11.94□□□□□ -0.5
PDGFC-201ENST00000274071 MAP7D2Q96T17 732 aa11.94□□□□□ -0.5
PDGFC-201ENST00000274071 NCLP19338 710 aaKnown RBP11.93□□□□□ -0.5
PDGFC-201ENST00000274071 RRP1P56182 461 aaKnown RBP11.93□□□□□ -0.5
PDGFC-201ENST00000274071 ZNF326Q5BKZ1 582 aaKnown RBP11.93□□□□□ -0.5
PDGFC-201ENST00000274071 PHLDB1Q86UU1 1377 aa11.93□□□□□ -0.5
PDGFC-201ENST00000274071 PRDM10Q9NQV6 1147 aa11.92□□□□□ -0.5
PDGFC-201ENST00000274071 CNTLNQ9NXG0 1405 aa11.92□□□□□ -0.5
PDGFC-201ENST00000274071 SENP3-EIF4A1A0A087X0R7 540 aa11.92□□□□□ -0.5
PDGFC-201ENST00000274071 UTP14CQ5TAP6 766 aaKnown RBP11.92□□□□□ -0.5
PDGFC-201ENST00000274071 FAM13BQ9NYF5 915 aa11.92□□□□□ -0.5
PDGFC-201ENST00000274071 ZNF830Q96NB3 372 aaPredicted RBP11.91□□□□□ -0.5
PDGFC-201ENST00000274071 TONSLQ96HA7 1378 aa11.91□□□□□ -0.5
PDGFC-201ENST00000274071 SNAPC4Q5SXM2 1469 aa11.91□□□□□ -0.5
PDGFC-201ENST00000274071 PLCD3Q8N3E9 789 aa11.91□□□□□ -0.5
PDGFC-201ENST00000274071 MYH16Q9H6N6 1097 aa11.91□□□□□ -0.5
PDGFC-201ENST00000274071 THOC2Q8NI27 1593 aaKnown RBP11.91□□□□□ -0.5
PDGFC-201ENST00000274071 DMTNQ08495 405 aa11.91□□□□□ -0.5
PDGFC-201ENST00000274071 IQGAP2Q13576 1575 aa11.9□□□□□ -0.51
PDGFC-201ENST00000274071 HSPA5P11021 654 aaKnown RBP11.89□□□□□ -0.51
PDGFC-201ENST00000274071 PPP4R3BQ5MIZ7 849 aa11.89□□□□□ -0.51
PDGFC-201ENST00000274071 EIF4G3O43432 1585 aaKnown RBP11.89□□□□□ -0.51
PDGFC-201ENST00000274071 NCOA2Q15596 1464 aa11.88□□□□□ -0.51
PDGFC-201ENST00000274071 MRE11P49959 708 aa11.88□□□□□ -0.51
PDGFC-201ENST00000274071 FAM50AQ14320 339 aaKnown RBP11.88□□□□□ -0.51
PDGFC-201ENST00000274071 C8orf34Q49A92 452 aa11.88□□□□□ -0.51
PDGFC-201ENST00000274071 GZF1Q9H116 711 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms