RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 GRIN2BQ13224 1484 aa17.24■□□□□ 0.35
LIG1-201ENST00000263274 SUPT6HQ7KZ85 1726 aaKnown RBP17.24■□□□□ 0.35
LIG1-201ENST00000263274 MSH5O43196 834 aa17.23■□□□□ 0.35
LIG1-201ENST00000263274 CCDC7Q96M83 1385 aa17.23■□□□□ 0.35
LIG1-201ENST00000263274 EHBP1L1Q8N3D4 1523 aa17.22■□□□□ 0.35
LIG1-201ENST00000263274 KIF7Q2M1P5 1343 aa17.21■□□□□ 0.35
LIG1-201ENST00000263274 CNTLNQ9NXG0 1405 aa17.2■□□□□ 0.34
LIG1-201ENST00000263274 MAGI3Q5TCQ9 1506 aa17.19■□□□□ 0.34
LIG1-201ENST00000263274 PKD2Q13563 968 aa17.19■□□□□ 0.34
LIG1-201ENST00000263274 TMC1Q8TDI8 760 aa17.19■□□□□ 0.34
LIG1-201ENST00000263274 EPRSP07814 1512 aaKnown RBP17.17■□□□□ 0.34
LIG1-201ENST00000263274 UGGT2Q9NYU1 1516 aa17.16■□□□□ 0.34
LIG1-201ENST00000263274 CCDC136Q96JN2 1154 aa17.15■□□□□ 0.34
LIG1-201ENST00000263274 KDM6BO15054 1643 aa17.14■□□□□ 0.34
LIG1-201ENST00000263274 CARD11Q9BXL7 1154 aa17.13■□□□□ 0.33
LIG1-201ENST00000263274 ZBED9Q6R2W3 1325 aa17.12■□□□□ 0.33
LIG1-201ENST00000263274 NBR1Q14596 966 aa17.11■□□□□ 0.33
LIG1-201ENST00000263274 ANKRD30BQ9BXX2 1392 aa17.11■□□□□ 0.33
LIG1-201ENST00000263274 THOC2Q8NI27 1593 aaKnown RBP17.11■□□□□ 0.33
LIG1-201ENST00000263274 SAMD9Q5K651 1589 aa17.1■□□□□ 0.33
LIG1-201ENST00000263274 LRRIQ1Q96JM4 1722 aa17.1■□□□□ 0.33
LIG1-201ENST00000263274 RGL3Q3MIN7 710 aa17.1■□□□□ 0.33
LIG1-201ENST00000263274 WDR62O43379 1518 aa17.1■□□□□ 0.33
LIG1-201ENST00000263274 DENND4BO75064 1496 aaPredicted RBP17.09■□□□□ 0.33
LIG1-201ENST00000263274 DAPK1P53355 1430 aa17.08■□□□□ 0.33
LIG1-201ENST00000263274 KDM5BQ9UGL1 1544 aa17.08■□□□□ 0.32
LIG1-201ENST00000263274 DCAF11Q8TEB1 546 aa17.08■□□□□ 0.32
LIG1-201ENST00000263274 NCOA1Q15788 1441 aa17.08■□□□□ 0.32
LIG1-201ENST00000263274 MIA2Q96PC5 1412 aa17.08■□□□□ 0.32
LIG1-201ENST00000263274 IFT140Q96RY7 1462 aa17.07■□□□□ 0.32
LIG1-201ENST00000263274 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.07■□□□□ 0.322e-7■■■■□ 24.9
LIG1-201ENST00000263274 HECW1Q76N89 1606 aa17.07■□□□□ 0.32
LIG1-201ENST00000263274 ABCC5O15440 1437 aa17.07■□□□□ 0.32
LIG1-201ENST00000263274 TSPY4P0CV99 314 aa17.06■□□□□ 0.32
LIG1-201ENST00000263274 TSPY10P0CW01 314 aa17.06■□□□□ 0.32
LIG1-201ENST00000263274 USP47Q96K76 1375 aa17.06■□□□□ 0.32
LIG1-201ENST00000263274 PRG4Q92954 1404 aaPredicted RBP17.06■□□□□ 0.32
LIG1-201ENST00000263274 ABCA5Q8WWZ7 1642 aa17.06■□□□□ 0.32
LIG1-201ENST00000263274 NPM2Q86SE8 214 aaKnown RBP17.05■□□□□ 0.32
LIG1-201ENST00000263274 AKNAQ7Z591 1439 aa17.05■□□□□ 0.32
LIG1-201ENST00000263274 IQGAP2Q13576 1575 aa17.05■□□□□ 0.32
LIG1-201ENST00000263274 FANCIQ9NVI1 1328 aa17.05■□□□□ 0.32
LIG1-201ENST00000263274 PLEKHD1A6NEE1 506 aa17.05■□□□□ 0.32
LIG1-201ENST00000263274 ERICH6BQ5W0A0 696 aa17.05■□□□□ 0.32
LIG1-201ENST00000263274 NUP155O75694 1391 aa17.04■□□□□ 0.32
LIG1-201ENST00000263274 ST20-MTHFSA0A0A6YYL1 179 aa17.03■□□□□ 0.32
LIG1-201ENST00000263274 TCOF1Q13428 1488 aaKnown RBP17.03■□□□□ 0.32
LIG1-201ENST00000263274 NUDCQ9Y266 331 aa17.02■□□□□ 0.32
LIG1-201ENST00000263274 RPRD2Q5VT52 1461 aaKnown RBP17.02■□□□□ 0.32
LIG1-201ENST00000263274 HNRNPMP52272 730 aaKnown RBP eCLIP17.02■□□□□ 0.31
LIG1-201ENST00000263274 ANP32AP39687 249 aaKnown RBP16.97■□□□□ 0.31
LIG1-201ENST00000263274 ARHGEF11O15085 1522 aa16.97■□□□□ 0.31
LIG1-201ENST00000263274 JPH4Q96JJ6 628 aa16.97■□□□□ 0.31
LIG1-201ENST00000263274 ANKRD30AQ9BXX3 1397 aa16.97■□□□□ 0.31
LIG1-201ENST00000263274 ROCK1Q13464 1354 aa16.96■□□□□ 0.31
LIG1-201ENST00000263274 CC2D1BQ5T0F9 858 aaKnown RBP16.95■□□□□ 0.3
LIG1-201ENST00000263274 NOP58Q9Y2X3 529 aaKnown RBP16.95■□□□□ 0.3
LIG1-201ENST00000263274 ANO8Q9HCE9 1232 aaPredicted RBP16.94■□□□□ 0.3
LIG1-201ENST00000263274 DEKP35659 375 aaKnown RBP16.93■□□□□ 0.3
LIG1-201ENST00000263274 PNISRQ8TF01 805 aaKnown RBP16.93■□□□□ 0.3
LIG1-201ENST00000263274 PLB1Q6P1J6 1458 aa16.93■□□□□ 0.3
LIG1-201ENST00000263274 GCC2Q8IWJ2 1684 aa16.93■□□□□ 0.3
LIG1-201ENST00000263274 TARBP1Q13395 1621 aaKnown RBP16.93■□□□□ 0.3
LIG1-201ENST00000263274 PAK3O75914 559 aaPredicted RBP16.93■□□□□ 0.3
LIG1-201ENST00000263274 NUP153P49790 1475 aaKnown RBP16.92■□□□□ 0.3
LIG1-201ENST00000263274 TEX14Q8IWB6 1497 aa16.92■□□□□ 0.3
LIG1-201ENST00000263274 ANKRD50Q9ULJ7 1429 aa16.92■□□□□ 0.3
LIG1-201ENST00000263274 EIF5BO60841 1220 aaKnown RBP16.91■□□□□ 0.3
LIG1-201ENST00000263274 KIAA1107Q9UPP5 1409 aa16.91■□□□□ 0.3
LIG1-201ENST00000263274 OSCARQ8IYS5 282 aa16.91■□□□□ 0.3
LIG1-201ENST00000263274 EIF4G3O43432 1585 aaKnown RBP16.91■□□□□ 0.3
LIG1-201ENST00000263274 ZBTB47Q9UFB7 747 aaPredicted RBP16.91■□□□□ 0.3
LIG1-201ENST00000263274 SPATA31E1Q6ZUB1 1445 aa16.9■□□□□ 0.3
LIG1-201ENST00000263274 ROCK2O75116 1388 aaKnown RBP16.89■□□□□ 0.29
LIG1-201ENST00000263274 TROQ12816 1431 aaPredicted RBP16.89■□□□□ 0.29
LIG1-201ENST00000263274 EXOC6Q8TAG9 804 aa16.89■□□□□ 0.29
LIG1-201ENST00000263274 CAMSAP2Q08AD1 1489 aa16.89■□□□□ 0.29
LIG1-201ENST00000263274 RTL5Q5HYW3 569 aaPredicted RBP16.89■□□□□ 0.29
LIG1-201ENST00000263274 KIAA0586Q9BVV6 1533 aa16.89■□□□□ 0.29
LIG1-201ENST00000263274 DHX29Q7Z478 1369 aaKnown RBP16.88■□□□□ 0.29
LIG1-201ENST00000263274 PZPP20742 1482 aa16.87■□□□□ 0.29
LIG1-201ENST00000263274 PLEKHG5O94827 1062 aa16.86■□□□□ 0.29
LIG1-201ENST00000263274 NBPF1Q3BBV0 1214 aa16.86■□□□□ 0.29
LIG1-201ENST00000263274 ADAMTS12P58397 1594 aa16.86■□□□□ 0.29
LIG1-201ENST00000263274 PLIN1O60240 522 aa16.86■□□□□ 0.29
LIG1-201ENST00000263274 SMG6Q86US8 1419 aaKnown RBP16.85■□□□□ 0.29
LIG1-201ENST00000263274 RCAN3Q9UKA8 241 aa16.85■□□□□ 0.29
LIG1-201ENST00000263274 DISP1Q96F81 1524 aa16.85■□□□□ 0.29
LIG1-201ENST00000263274 PBRM1Q86U86 1689 aa16.85■□□□□ 0.29
LIG1-201ENST00000263274 KIF15Q9NS87 1388 aa16.85■□□□□ 0.29
LIG1-201ENST00000263274 MYBBP1AQ9BQG0 1328 aaKnown RBP16.84■□□□□ 0.29
LIG1-201ENST00000263274 CDCA7LQ96GN5 454 aa16.84■□□□□ 0.29
LIG1-201ENST00000263274 GPATCH8Q9UKJ3 1502 aaKnown RBP16.84■□□□□ 0.29
LIG1-201ENST00000263274 MYT1LQ9UL68 1186 aa16.84■□□□□ 0.29
LIG1-201ENST00000263274 CARMIL2Q6F5E8 1435 aa16.83■□□□□ 0.28
LIG1-201ENST00000263274 DNMT1P26358 1616 aaKnown RBP16.82■□□□□ 0.28
LIG1-201ENST00000263274 RALBP1Q15311 655 aa16.82■□□□□ 0.28
LIG1-201ENST00000263274 RRP1P56182 461 aaKnown RBP16.81■□□□□ 0.28
LIG1-201ENST00000263274 GRIN2AQ12879 1464 aa16.8■□□□□ 0.28
LIG1-201ENST00000263274 LAS1LQ9Y4W2 734 aaKnown RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms